
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376730/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/GBM-TP/2909397/1.GDAC_mergedClustering.Finished/GBM-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=584, in cluster file=563, common to both=563
[1]  70 563
[1] "Amp Peak  1(1p36.21) mutation analysis"
[1] 3
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            89                            474 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            89                            474 
[1] "Amp Peak  2(1q32.1) mutation analysis"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                          153                           410 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                          153                           410 
[1] "Amp Peak  3(1q44) mutation analysis"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                         96                         467 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                         96                         467 
[1] "Amp Peak  4(2p24.3) mutation analysis"
[1] 3
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           46                           517 
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           46                           517 
[1] "Amp Peak  5(3q26.33) mutation analysis"
[1] 3
  AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE 
                           108                            455 
  AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE 
                           108                            455 
[1] "Amp Peak  6(4p16.3) mutation analysis"
[1] 3
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           46                           517 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           46                           517 
[1] "Amp Peak  7(4q12) mutation analysis"
[1] 3
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                        104                         459 
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                        104                         459 
[1] "Amp Peak  8(7p11.2) mutation analysis"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          494                            69 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          494                            69 
[1] "Amp Peak  9(7q11.21) mutation analysis"
[1] 3
  AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE 
                           452                            111 
  AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE 
                           452                            111 
[1] "Amp Peak 10(7q21.2) mutation analysis"
[1] 3
  AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE 
                          468                            95 
  AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE 
                          468                            95 
[1] "Amp Peak 11(7q31.2) mutation analysis"
[1] 3
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          460                           103 
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          460                           103 
[1] "Amp Peak 12(7q36.1) mutation analysis"
[1] 3
  AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE 
                          465                            98 
  AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE 
                          465                            98 
[1] "Amp Peak 13(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                            64                            499 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                            64                            499 
[1] "Amp Peak 14(11p13) mutation analysis"
[1] 3
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                          26                          537 
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                          26                          537 
[1] "Amp Peak 15(12p13.32) mutation analysis"
[1] 3
  AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE 
                             81                             482 
  AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE 
                             81                             482 
[1] "Amp Peak 16(12q14.1) mutation analysis"
[1] 3
  AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE 
                           131                            432 
  AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE 
                           131                            432 
[1] "Amp Peak 17(12q15) mutation analysis"
[1] 3
  AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE 
                          92                          471 
  AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE 
                          92                          471 
[1] "Amp Peak 18(13q34) mutation analysis"
[1] 3
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          30                          533 
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          30                          533 
[1] "Amp Peak 19(14q32.33) mutation analysis"
[1] 3
  AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE 
                             34                             529 
  AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE 
                             34                             529 
[1] "Amp Peak 20(17p13.2) mutation analysis"
[1] 3
  AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE 
                            45                            518 
  AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE 
                            45                            518 
[1] "Amp Peak 21(17q25.1) mutation analysis"
[1] 3
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            78                            485 
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            78                            485 
[1] "Amp Peak 22(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE 
                           240                            323 
  AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE 
                           240                            323 
[1] "Amp Peak 23(19q12) mutation analysis"
[1] 3
  AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE 
                         203                          360 
  AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE 
                         203                          360 
[1] "Amp Peak 24(21q21.1) mutation analysis"
[1] 3
  AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE 
                            67                            496 
  AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE 
                            67                            496 
[1] "Del Peak  1(1p36.32) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            99                            464 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            99                            464 
[1] "Del Peak  2(1p36.23) mutation analysis"
[1] 3
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           135                            428 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           135                            428 
[1] "Del Peak  3(1p32.3) mutation analysis"
[1] 3
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           60                           503 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           60                           503 
[1] "Del Peak  4(1p22.1) mutation analysis"
[1] 3
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           47                           516 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           47                           516 
[1] "Del Peak  5(1q42.11) mutation analysis"
[1] 3
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            47                            516 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            47                            516 
[1] "Del Peak  6(1q44) mutation analysis"
[1] 3
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         32                         531 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         32                         531 
[1] "Del Peak  7(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           44                           519 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           44                           519 
[1] "Del Peak  8(2q37.1) mutation analysis"
[1] 3
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           56                           507 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           56                           507 
[1] "Del Peak  9(3p21.1) mutation analysis"
[1] 3
  DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE 
                           52                           511 
  DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE 
                           52                           511 
[1] "Del Peak 10(3q13.31) mutation analysis"
[1] 3
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            55                            508 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            55                            508 
[1] "Del Peak 11(3q22.1) mutation analysis"
[1] 3
  DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE 
                           55                           508 
  DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE 
                           55                           508 
[1] "Del Peak 12(3q29) mutation analysis"
[1] 3
  DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE 
                         64                         499 
  DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE 
                         64                         499 
[1] "Del Peak 13(4p16.3) mutation analysis"
[1] 3
  DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE 
                           78                           485 
  DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE 
                           78                           485 
[1] "Del Peak 14(4q34.3) mutation analysis"
[1] 3
  DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE 
                           90                           473 
  DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE 
                           90                           473 
[1] "Del Peak 15(5q35.3) mutation analysis"
[1] 3
  DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE 
                           54                           509 
  DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE 
                           54                           509 
[1] "Del Peak 16(6q22.31) mutation analysis"
[1] 3
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           153                            410 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           153                            410 
[1] "Del Peak 17(6q26) mutation analysis"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        173                         390 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        173                         390 
[1] "Del Peak 18(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           67                           496 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           67                           496 
[1] "Del Peak 19(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                          408                           155 
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                          408                           155 
[1] "Del Peak 20(9q34.2) mutation analysis"
[1] 3
  DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE 
                           71                           492 
  DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE 
                           71                           492 
[1] "Del Peak 21(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           457                            106 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           457                            106 
[1] "Del Peak 22(10p13) mutation analysis"
[1] 3
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         459                          104 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         459                          104 
[1] "Del Peak 23(10p11.23) mutation analysis"
[1] 3
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            463                             100 
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            463                             100 
[1] "Del Peak 24(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            499                              64 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            499                              64 
[1] "Del Peak 25(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           500                             63 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           500                             63 
[1] "Del Peak 26(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           127                            436 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           127                            436 
[1] "Del Peak 27(11p11.2) mutation analysis"
[1] 3
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           101                            462 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           101                            462 
[1] "Del Peak 28(11q14.1) mutation analysis"
[1] 3
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                            95                            468 
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                            95                            468 
[1] "Del Peak 29(12p13.1) mutation analysis"
[1] 3
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                            75                            488 
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                            75                            488 
[1] "Del Peak 30(12q12) mutation analysis"
[1] 3
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          76                          487 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          76                          487 
[1] "Del Peak 31(12q15) mutation analysis"
[1] 3
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                          77                          486 
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                          77                          486 
[1] "Del Peak 32(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           236                            327 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           236                            327 
[1] "Del Peak 33(14q13.1) mutation analysis"
[1] 3
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           175                            388 
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           175                            388 
[1] "Del Peak 34(14q24.2) mutation analysis"
[1] 3
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           170                            393 
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           170                            393 
[1] "Del Peak 35(14q31.3) mutation analysis"
[1] 3
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           156                            407 
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           156                            407 
[1] "Del Peak 36(15q14) mutation analysis"
[1] 3
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         151                          412 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         151                          412 
[1] "Del Peak 37(16p12.2) mutation analysis"
[1] 3
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                            89                            474 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                            89                            474 
[1] "Del Peak 38(16q23.3) mutation analysis"
[1] 3
  DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE 
                            95                            468 
  DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE 
                            95                            468 
[1] "Del Peak 39(17p13.2) mutation analysis"
[1] 3
  DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE 
                            85                            478 
  DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE 
                            85                            478 
[1] "Del Peak 40(17p13.1) mutation analysis"
[1] 3
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                            95                            468 
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                            95                            468 
[1] "Del Peak 41(17q11.2) mutation analysis"
[1] 3
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            71                            492 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            71                            492 
[1] "Del Peak 42(18q22.3) mutation analysis"
[1] 3
  DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE 
                            79                            484 
  DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE 
                            79                            484 
[1] "Del Peak 43(19q13.41) mutation analysis"
[1] 3
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                             99                             464 
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                             99                             464 
[1] "Del Peak 44(21q22.3) mutation analysis"
[1] 3
  DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE 
                            59                            504 
  DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE 
                            59                            504 
[1] "Del Peak 45(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            208                             355 
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            208                             355 
[1] "Del Peak 46(Xp22.2) mutation analysis"
[1] 3
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          123                           440 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          123                           440 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"

Input Data has 10 rows and 563 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 563 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p36.21) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           26                            146
  CLUS_2                           28                            142
  CLUS_3                           26                            141
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           39                            178
  CLUS_2                           14                            112
  CLUS_3                           27                            139
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           22                            117
  CLUS_2                           35                            122
  CLUS_3                            9                             63
  CLUS_4                           14                             90
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           20                            143
  CLUS_2                           43                            136
  CLUS_3                           17                            113
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           50                            111
  CLUS_2                           20                            194
  CLUS_3                           19                            169
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            5                             33
  CLUS_2                            4                             16
  CLUS_3                            1                             23
  CLUS_4                            3                             24
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             51
  CLUS_2                            7                             51
  CLUS_3                           11                             33
  CLUS_4                            5                             40
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                            1                             32
  CLUS_3                           12                             92
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                           16                             51
  CLUS_3                            4                             32
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           15                             51
  CLUS_2                            4                             17
  CLUS_3                            5                             55

Clustering(2) Variable = Amp Peak  2(1q32.1) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          44                           128
  CLUS_2                          45                           125
  CLUS_3                          49                           118
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          58                           159
  CLUS_2                          38                            88
  CLUS_3                          42                           124
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          30                           109
  CLUS_2                          47                           110
  CLUS_3                          22                            50
  CLUS_4                          33                            71
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          36                           127
  CLUS_2                          58                           121
  CLUS_3                          38                            92
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          73                            88
  CLUS_2                          43                           171
  CLUS_3                          37                           151
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                           7                            13
  CLUS_3                           3                            21
  CLUS_4                           7                            20
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          13                            41
  CLUS_2                          17                            41
  CLUS_3                          14                            30
  CLUS_4                          12                            33
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                           7                            26
  CLUS_3                          27                            77
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           8                            36
  CLUS_2                          19                            48
  CLUS_3                          10                            26
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          19                            47
  CLUS_2                           8                            13
  CLUS_3                          10                            50

Clustering(3) Variable = Amp Peak  3(1q44) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        30                         142
  CLUS_2                        31                         139
  CLUS_3                        27                         140
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        42                         175
  CLUS_2                        18                         108
  CLUS_3                        28                         138
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        21                         118
  CLUS_2                        30                         127
  CLUS_3                        11                          61
  CLUS_4                        24                          80
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         138
  CLUS_2                        37                         142
  CLUS_3                        24                         106
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        53                         108
  CLUS_2                        21                         193
  CLUS_3                        22                         166
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          33
  CLUS_2                         3                          17
  CLUS_3                         1                          23
  CLUS_4                         4                          23
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                         9                          49
  CLUS_3                         9                          35
  CLUS_4                         8                          37
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        13                          51
  CLUS_2                         2                          31
  CLUS_3                        16                          88
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         6                          38
  CLUS_2                        11                          56
  CLUS_3                         7                          29
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        13                          53
  CLUS_2                         4                          17
  CLUS_3                         7                          53

Clustering(4) Variable = Amp Peak  4(2p24.3) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          14                           158
  CLUS_2                          23                           147
  CLUS_3                           6                           161
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          17                           200
  CLUS_2                           6                           120
  CLUS_3                          20                           146
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          10                           129
  CLUS_2                          15                           142
  CLUS_3                           5                            67
  CLUS_4                          11                            93
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          13                           150
  CLUS_2                          13                           166
  CLUS_3                          15                           115
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          24                           137
  CLUS_2                           7                           207
  CLUS_3                          15                           173
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           1                            19
  CLUS_3                           0                            24
  CLUS_4                           5                            22
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           3                            51
  CLUS_2                          10                            48
  CLUS_3                           3                            41
  CLUS_4                           4                            41
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           1                            32
  CLUS_3                          15                            89
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           4                            40
  CLUS_2                           5                            62
  CLUS_3                           3                            33
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           6                            60
  CLUS_2                           1                            20
  CLUS_3                           5                            55

Clustering(5) Variable = Amp Peak  5(3q26.33) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           34                            138
  CLUS_2                           41                            129
  CLUS_3                           23                            144
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           41                            176
  CLUS_2                           21                            105
  CLUS_3                           36                            130
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           26                            113
  CLUS_2                           34                            123
  CLUS_3                           14                             58
  CLUS_4                           19                             85
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                           38                            141
  CLUS_3                           26                            104
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           52                            109
  CLUS_2                           25                            189
  CLUS_3                           31                            157
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            6                             14
  CLUS_3                            1                             23
  CLUS_4                           12                             15
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                           10                             48
  CLUS_3                            9                             35
  CLUS_4                           12                             33
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                            3                             30
  CLUS_3                           21                             83
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           12                             32
  CLUS_2                           15                             52
  CLUS_3                            6                             30
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                            2                             19
  CLUS_3                           15                             45

Clustering(6) Variable = Amp Peak  6(4p16.3) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          12                           160
  CLUS_2                          14                           156
  CLUS_3                          14                           153
D6V2, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          14                           203
  CLUS_2                          11                           115
  CLUS_3                          15                           151
D6V3, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          10                           129
  CLUS_2                          16                           141
  CLUS_3                           6                            66
  CLUS_4                           8                            96
D6V4, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          10                           153
  CLUS_2                          18                           161
  CLUS_3                          12                           118
D6V5, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          16                           145
  CLUS_2                          18                           196
  CLUS_3                          12                           176
D6V6, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                           3                            17
  CLUS_3                           0                            24
  CLUS_4                           1                            26
D6V7, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           7                            51
  CLUS_3                           2                            42
  CLUS_4                           4                            41
D6V8, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           2                            31
  CLUS_3                          12                            92
D6V9, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                           7                            60
  CLUS_3                           3                            33
D6V10, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           6                            60
  CLUS_2                           3                            18
  CLUS_3                           6                            54

Clustering(7) Variable = Amp Peak  7(4q12) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        24                         148
  CLUS_2                        51                         119
  CLUS_3                        23                         144
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        30                         187
  CLUS_2                        17                         109
  CLUS_3                        51                         115
D7V3, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        23                         116
  CLUS_2                        36                         121
  CLUS_3                        17                          55
  CLUS_4                        20                          84
D7V4, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        25                         138
  CLUS_2                        36                         143
  CLUS_3                        35                          95
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        52                         109
  CLUS_2                        22                         192
  CLUS_3                        30                         158
D7V6, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         5                          33
  CLUS_2                         4                          16
  CLUS_3                         1                          23
  CLUS_4                         7                          20
D7V7, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        12                          42
  CLUS_2                        14                          44
  CLUS_3                         5                          39
  CLUS_4                         6                          39
D7V8, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        10                          54
  CLUS_2                         5                          28
  CLUS_3                        22                          82
D7V9, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        14                          30
  CLUS_2                        11                          56
  CLUS_3                         4                          32
D7V10, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        13                          53
  CLUS_2                         2                          19
  CLUS_3                        14                          46

Clustering(8) Variable = Amp Peak  8(7p11.2) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         160                            12
  CLUS_2                         121                            49
  CLUS_3                         162                             5
D8V2, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         202                            15
  CLUS_2                         121                             5
  CLUS_3                         120                            46
D8V3, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         136                             3
  CLUS_2                         124                            33
  CLUS_3                          58                            14
  CLUS_4                          95                             9
D8V4, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         153                            10
  CLUS_2                         172                             7
  CLUS_3                          88                            42
D8V5, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         149                            12
  CLUS_2                         213                             1
  CLUS_3                         132                            56
D8V6, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          37                             1
  CLUS_2                          20                             0
  CLUS_3                          24                             0
  CLUS_4                          16                            11
D8V7, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          49                             5
  CLUS_2                          42                            16
  CLUS_3                          44                             0
  CLUS_4                          44                             1
D8V8, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          64                             0
  CLUS_2                          31                             2
  CLUS_3                          84                            20
D8V9, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          31                            13
  CLUS_2                          66                             1
  CLUS_3                          34                             2
D8V10, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          64                             2
  CLUS_2                          21                             0
  CLUS_3                          46                            14

Clustering(9) Variable = Amp Peak  9(7q11.21) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          153                             19
  CLUS_2                          112                             58
  CLUS_3                          138                             29
D9V2, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          189                             28
  CLUS_2                          102                             24
  CLUS_3                          112                             54
D9V3, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          126                             13
  CLUS_2                          113                             44
  CLUS_3                           48                             24
  CLUS_4                           90                             14
D9V4, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          143                             20
  CLUS_2                          155                             24
  CLUS_3                           79                             51
D9V5, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          144                             17
  CLUS_2                          186                             28
  CLUS_3                          122                             66
D9V6, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           35                              3
  CLUS_2                           19                              1
  CLUS_3                           20                              4
  CLUS_4                           16                             11
D9V7, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           43                             11
  CLUS_2                           39                             19
  CLUS_3                           39                              5
  CLUS_4                           42                              3
D9V8, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           55                              9
  CLUS_2                           28                              5
  CLUS_3                           80                             24
D9V9, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           29                             15
  CLUS_2                           61                              6
  CLUS_3                           28                              8
D9V10, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           61                              5
  CLUS_2                           16                              5
  CLUS_3                           41                             19

Clustering(10) Variable = Amp Peak 10(7q21.2) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         152                            20
  CLUS_2                         121                            49
  CLUS_3                         146                            21
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         189                            28
  CLUS_2                         110                            16
  CLUS_3                         120                            46
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         123                            16
  CLUS_2                         120                            37
  CLUS_3                          54                            18
  CLUS_4                          90                            14
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         140                            23
  CLUS_2                         160                            19
  CLUS_3                          87                            43
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         145                            16
  CLUS_2                         196                            18
  CLUS_3                         127                            61
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          36                             2
  CLUS_2                          19                             1
  CLUS_3                          22                             2
  CLUS_4                          18                             9
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          44                            10
  CLUS_2                          42                            16
  CLUS_3                          40                             4
  CLUS_4                          42                             3
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          57                             7
  CLUS_2                          30                             3
  CLUS_3                          81                            23
D10V9, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          33                            11
  CLUS_2                          61                             6
  CLUS_3                          32                             4
D10V10, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          63                             3
  CLUS_2                          17                             4
  CLUS_3                          46                            14

Clustering(11) Variable = Amp Peak 11(7q31.2) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         154                            18
  CLUS_2                         122                            48
  CLUS_3                         137                            30
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         191                            26
  CLUS_2                         102                            24
  CLUS_3                         120                            46
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         121                            18
  CLUS_2                         114                            43
  CLUS_3                          54                            18
  CLUS_4                          91                            13
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         141                            22
  CLUS_2                         151                            28
  CLUS_3                          88                            42
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         141                            20
  CLUS_2                         190                            24
  CLUS_3                         129                            59
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          36                             2
  CLUS_2                          18                             2
  CLUS_3                          22                             2
  CLUS_4                          19                             8
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          43                            11
  CLUS_2                          42                            16
  CLUS_3                          39                             5
  CLUS_4                          40                             5
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          54                            10
  CLUS_2                          30                             3
  CLUS_3                          80                            24
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          33                            11
  CLUS_2                          58                             9
  CLUS_3                          31                             5
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          62                             4
  CLUS_2                          15                             6
  CLUS_3                          45                            15

Clustering(12) Variable = Amp Peak 12(7q36.1) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                         151                            21
  CLUS_2                         124                            46
  CLUS_3                         142                            25
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                         188                            29
  CLUS_2                         107                            19
  CLUS_3                         122                            44
D12V3, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                         122                            17
  CLUS_2                         121                            36
  CLUS_3                          55                            17
  CLUS_4                          87                            17
D12V4, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                         138                            25
  CLUS_2                         158                            21
  CLUS_3                          89                            41
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                         139                            22
  CLUS_2                         191                            23
  CLUS_3                         135                            53
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                          36                             2
  CLUS_2                          19                             1
  CLUS_3                          22                             2
  CLUS_4                          18                             9
D12V7, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                          44                            10
  CLUS_2                          45                            13
  CLUS_3                          39                             5
  CLUS_4                          41                             4
D12V8, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                          56                             8
  CLUS_2                          30                             3
  CLUS_3                          83                            21
D12V9, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                          31                            13
  CLUS_2                          60                             7
  CLUS_3                          32                             4
D12V10, multiclass
        clus
vv       AMP PEAK 12(7Q36.1) MUTATED AMP PEAK 12(7Q36.1) WILD-TYPE
  CLUS_1                          62                             4
  CLUS_2                          17                             4
  CLUS_3                          44                            16

Clustering(13) Variable = Amp Peak 13(8q24.21) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           12                            160
  CLUS_2                           38                            132
  CLUS_3                            7                            160
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           16                            201
  CLUS_2                            8                            118
  CLUS_3                           33                            133
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           10                            129
  CLUS_2                           26                            131
  CLUS_3                           10                             62
  CLUS_4                            8                             96
D13V4, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           12                            151
  CLUS_2                           13                            166
  CLUS_3                           29                            101
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           31                            130
  CLUS_2                            8                            206
  CLUS_3                           25                            163
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            2                             36
  CLUS_2                            1                             19
  CLUS_3                            2                             22
  CLUS_4                            7                             20
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            3                             51
  CLUS_2                           12                             46
  CLUS_3                            4                             40
  CLUS_4                            5                             40
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                            0                             33
  CLUS_3                           19                             85
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                            7                             60
  CLUS_3                            3                             33
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            6                             60
  CLUS_2                            3                             18
  CLUS_3                           11                             49

Clustering(14) Variable = Amp Peak 14(11p13) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          5                          167
  CLUS_2                         10                          160
  CLUS_3                          8                          159
D14V2, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          9                          208
  CLUS_2                          7                          119
  CLUS_3                          7                          159
D14V3, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          8                          131
  CLUS_2                          5                          152
  CLUS_3                          2                           70
  CLUS_4                          8                           96
D14V4, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          9                          154
  CLUS_2                          7                          172
  CLUS_3                          7                          123
D14V5, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          9                          152
  CLUS_2                          7                          207
  CLUS_3                         10                          178
D14V6, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          3                           35
  CLUS_2                          0                           20
  CLUS_3                          0                           24
  CLUS_4                          0                           27
D14V7, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          1                           53
  CLUS_2                          1                           57
  CLUS_3                          0                           44
  CLUS_4                          3                           42
D14V8, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          0                           64
  CLUS_2                          0                           33
  CLUS_3                          5                           99
D14V9, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          2                           42
  CLUS_2                          3                           64
  CLUS_3                          0                           36
D14V10, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                          3                           63
  CLUS_2                          0                           21
  CLUS_3                          2                           58

Clustering(15) Variable = Amp Peak 15(12p13.32) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                            23                             149
  CLUS_2                            26                             144
  CLUS_3                            25                             142
D15V2, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                            33                             184
  CLUS_2                            15                             111
  CLUS_3                            26                             140
D15V3, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                            18                             121
  CLUS_2                            27                             130
  CLUS_3                             9                              63
  CLUS_4                            16                              88
D15V4, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                            22                             141
  CLUS_2                            27                             152
  CLUS_3                            21                             109
D15V5, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                            41                             120
  CLUS_2                            18                             196
  CLUS_3                            22                             166
D15V6, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                             3                              35
  CLUS_2                             5                              15
  CLUS_3                             3                              21
  CLUS_4                             6                              21
D15V7, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                             4                              50
  CLUS_2                            10                              48
  CLUS_3                             7                              37
  CLUS_4                             7                              38
D15V8, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                            11                              53
  CLUS_2                             3                              30
  CLUS_3                            14                              90
D15V9, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                             5                              39
  CLUS_2                            13                              54
  CLUS_3                             4                              32
D15V10, multiclass
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  CLUS_1                            14                              52
  CLUS_2                             1                              20
  CLUS_3                             7                              53

Clustering(16) Variable = Amp Peak 16(12q14.1) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           36                            136
  CLUS_2                           51                            119
  CLUS_3                           35                            132
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           47                            170
  CLUS_2                           28                             98
  CLUS_3                           47                            119
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           28                            111
  CLUS_2                           46                            111
  CLUS_3                           16                             56
  CLUS_4                           24                             80
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           31                            132
  CLUS_2                           51                            128
  CLUS_3                           32                             98
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           67                             94
  CLUS_2                           37                            177
  CLUS_3                           27                            161
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            6                             14
  CLUS_3                            3                             21
  CLUS_4                            8                             19
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                           21                             37
  CLUS_3                            8                             36
  CLUS_4                            9                             36
D16V8, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                            5                             28
  CLUS_3                           28                             76
D16V9, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           14                             53
  CLUS_3                            8                             28
D16V10, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           15                             51
  CLUS_2                            3                             18
  CLUS_3                           23                             37

Clustering(17) Variable = Amp Peak 17(12q15) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         30                          142
  CLUS_2                         27                          143
  CLUS_3                         24                          143
D17V2, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         40                          177
  CLUS_2                         16                          110
  CLUS_3                         25                          141
D17V3, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         22                          117
  CLUS_2                         24                          133
  CLUS_3                         14                           58
  CLUS_4                         20                           84
D17V4, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         25                          138
  CLUS_2                         35                          144
  CLUS_3                         20                          110
D17V5, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         49                          112
  CLUS_2                         24                          190
  CLUS_3                         19                          169
D17V6, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                          5                           33
  CLUS_2                          6                           14
  CLUS_3                          3                           21
  CLUS_4                          4                           23
D17V7, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                          3                           51
  CLUS_2                         10                           48
  CLUS_3                          6                           38
  CLUS_4                          6                           39
D17V8, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         10                           54
  CLUS_2                          3                           30
  CLUS_3                         12                           92
D17V9, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                          9                           35
  CLUS_2                         11                           56
  CLUS_3                          3                           33
D17V10, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         11                           55
  CLUS_2                          1                           20
  CLUS_3                         11                           49

Clustering(18) Variable = Amp Peak 18(13q34) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         10                          162
  CLUS_2                         12                          158
  CLUS_3                          7                          160
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         11                          206
  CLUS_2                          7                          119
  CLUS_3                         11                          155
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          4                          135
  CLUS_2                         14                          143
  CLUS_3                          5                           67
  CLUS_4                          6                           98
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          7                          156
  CLUS_2                          9                          170
  CLUS_3                         13                          117
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         15                          146
  CLUS_2                          5                          209
  CLUS_3                         10                          178
D18V6, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 18(13Q34) MUTATED"
clus
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                           2                          107 
                  TCGA-06-0650                   TCGA-06-1804 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-1806                   TCGA-06-5408 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-5410                   TCGA-06-5411 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-5412                   TCGA-06-5413 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-5414                   TCGA-06-5415 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-5416                   TCGA-06-5418 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-5858                   TCGA-06-5859 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-6388                   TCGA-06-6389 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-6390                   TCGA-06-6391 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-6693                   TCGA-06-6694 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-6695                   TCGA-06-6697 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-6698                   TCGA-06-6699 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-06-6700                   TCGA-06-6701 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-12-5295                   TCGA-12-5299 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-12-5301                   TCGA-14-0740 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-14-0781                   TCGA-14-0862 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-14-1043                   TCGA-14-1395 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-14-1450                   TCGA-15-1444 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-19-4065                   TCGA-19-5947 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-19-5950                   TCGA-19-5951 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-19-5952                   TCGA-19-5953 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-19-5954                   TCGA-19-5955 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-19-5956                   TCGA-19-5958 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-19-5959                   TCGA-19-5960 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-26-1442                   TCGA-26-5132 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-26-5133                   TCGA-26-5134 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-26-5135                   TCGA-26-5136 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-26-5139                   TCGA-26-6173 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-26-6174                   TCGA-28-2501 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-28-2510                   TCGA-28-5204 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-28-5208                   TCGA-28-5209 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-28-5211                   TCGA-28-5213 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-28-5214                   TCGA-28-5215 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-28-5216                   TCGA-28-5218 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-28-5219                   TCGA-28-5220 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-28-6450                   TCGA-32-1979 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-32-1980                   TCGA-32-5222 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-41-5651                   TCGA-41-6646 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-74-6573                   TCGA-74-6575 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-74-6577                   TCGA-74-6578 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-74-6581                   TCGA-74-6584 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-4925                   TCGA-76-4926 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-4928                   TCGA-76-4929 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-4931                   TCGA-76-4934 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-4935                   TCGA-76-6191 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-6192                   TCGA-76-6193 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-6280                   TCGA-76-6282 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-6283                   TCGA-76-6285 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-6286                   TCGA-76-6656 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-6657                   TCGA-76-6660 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-6661                   TCGA-76-6662 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-76-6663                   TCGA-76-6664 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-81-5910                   TCGA-81-5911 
"AMP PEAK 18(13Q34) WILD-TYPE" "AMP PEAK 18(13Q34) WILD-TYPE" 
                  TCGA-87-5896 
"AMP PEAK 18(13Q34) WILD-TYPE" 
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          1                           53
  CLUS_2                          1                           57
  CLUS_3                          5                           39
  CLUS_4                          1                           44
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          5                           59
  CLUS_2                          0                           33
  CLUS_3                          3                          101
D18V9, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          2                           42
  CLUS_2                          3                           64
  CLUS_3                          4                           32
D18V10, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          4                           62
  CLUS_2                          1                           20
  CLUS_3                          4                           56

Clustering(19) Variable = Amp Peak 19(14q32.33) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             7                             165
  CLUS_2                             9                             161
  CLUS_3                            13                             154
D19V2, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            11                             206
  CLUS_2                            10                             116
  CLUS_3                             8                             158
D19V3, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            11                             128
  CLUS_2                             7                             150
  CLUS_3                             9                              63
  CLUS_4                             2                             102
D19V4, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             9                             154
  CLUS_2                            12                             167
  CLUS_3                             8                             122
D19V5, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             9                             152
  CLUS_2                            15                             199
  CLUS_3                            10                             178
D19V6, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             1                              37
  CLUS_2                             1                              19
  CLUS_3                             1                              23
  CLUS_4                             1                              26
D19V7, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             0                              54
  CLUS_2                             6                              52
  CLUS_3                             3                              41
  CLUS_4                             1                              44
D19V8, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             5                              59
  CLUS_2                             0                              33
  CLUS_3                             5                              99
D19V9, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             1                              43
  CLUS_2                             2                              65
  CLUS_3                             5                              31
D19V10, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             3                              63
  CLUS_2                             1                              20
  CLUS_3                             4                              56

Clustering(20) Variable = Amp Peak 20(17p13.2) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           10                            162
  CLUS_2                           25                            145
  CLUS_3                            8                            159
D20V2, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           13                            204
  CLUS_2                            8                            118
  CLUS_3                           22                            144
D20V3, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            6                            133
  CLUS_2                           19                            138
  CLUS_3                            7                             65
  CLUS_4                           12                             92
D20V4, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           14                            149
  CLUS_2                           13                            166
  CLUS_3                           17                            113
D20V5, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           22                            139
  CLUS_2                           10                            204
  CLUS_3                           13                            175
D20V6, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            2                             36
  CLUS_2                            1                             19
  CLUS_3                            0                             24
  CLUS_4                            0                             27
D20V7, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            3                             51
  CLUS_2                           10                             48
  CLUS_3                            1                             43
  CLUS_4                            4                             41
D20V8, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            4                             60
  CLUS_2                            3                             30
  CLUS_3                           11                             93
D20V9, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                            3                             64
  CLUS_3                            2                             34
D20V10, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            3                             63
  CLUS_2                            0                             21
  CLUS_3                            6                             54

Clustering(21) Variable = Amp Peak 21(17q25.1) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           21                            151
  CLUS_2                           32                            138
  CLUS_3                           17                            150
D21V2, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           29                            188
  CLUS_2                           15                            111
  CLUS_3                           26                            140
D21V3, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           16                            123
  CLUS_2                           25                            132
  CLUS_3                           10                             62
  CLUS_4                           20                             84
D21V4, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           22                            141
  CLUS_2                           27                            152
  CLUS_3                           22                            108
D21V5, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           39                            122
  CLUS_2                           18                            196
  CLUS_3                           21                            167
D21V6, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            3                             17
  CLUS_3                            1                             23
  CLUS_4                            3                             24
D21V7, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                            9                             49
  CLUS_3                            1                             43
  CLUS_4                            6                             39
D21V8, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            4                             60
  CLUS_2                            4                             29
  CLUS_3                           15                             89
D21V9, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                            9                             58
  CLUS_3                            4                             32
D21V10, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            8                             58
  CLUS_2                            1                             20
  CLUS_3                           10                             50

Clustering(22) Variable = Amp Peak 22(19p13.2) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           65                            107
  CLUS_2                           43                            127
  CLUS_3                          110                             57
D22V2, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           89                            128
  CLUS_2                           81                             45
  CLUS_3                           48                            118
D22V3, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           68                             71
  CLUS_2                           71                             86
  CLUS_3                           26                             46
  CLUS_4                           41                             63
D22V4, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           65                             98
  CLUS_2                           94                             85
  CLUS_3                           47                             83
D22V5, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           47                            114
  CLUS_2                          145                             69
  CLUS_3                           48                            140
D22V6, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           12                             26
  CLUS_2                           12                              8
  CLUS_3                           12                             12
  CLUS_4                            5                             22
D22V7, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           18                             36
  CLUS_2                           21                             37
  CLUS_3                           28                             16
  CLUS_4                           17                             28
D22V8, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           42                             22
  CLUS_2                            8                             25
  CLUS_3                           34                             70
D22V9, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           12                             32
  CLUS_2                           30                             37
  CLUS_3                           15                             21
D22V10, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           22                             44
  CLUS_2                           14                              7
  CLUS_3                           21                             39

Clustering(23) Variable = Amp Peak 23(19q12) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         66                          106
  CLUS_2                         32                          138
  CLUS_3                         86                           81
D23V2, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         84                          133
  CLUS_2                         65                           61
  CLUS_3                         35                          131
D23V3, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         60                           79
  CLUS_2                         53                          104
  CLUS_3                         22                           50
  CLUS_4                         41                           63
D23V4, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         63                          100
  CLUS_2                         79                          100
  CLUS_3                         34                           96
D23V5, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         38                          123
  CLUS_2                        123                           91
  CLUS_3                         42                          146
D23V6, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         10                           28
  CLUS_2                          9                           11
  CLUS_3                          9                           15
  CLUS_4                          4                           23
D23V7, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         16                           38
  CLUS_2                         15                           43
  CLUS_3                         24                           20
  CLUS_4                         14                           31
D23V8, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         35                           29
  CLUS_2                          7                           26
  CLUS_3                         27                           77
D23V9, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                          9                           35
  CLUS_2                         25                           42
  CLUS_3                         15                           21
D23V10, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         21                           45
  CLUS_2                         12                            9
  CLUS_3                         16                           44

Clustering(24) Variable = Amp Peak 24(21q21.1) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           34                            138
  CLUS_2                           15                            155
  CLUS_3                           11                            156
D24V2, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           37                            180
  CLUS_2                           10                            116
  CLUS_3                           13                            153
D24V3, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           23                            116
  CLUS_2                           16                            141
  CLUS_3                            5                             67
  CLUS_4                           17                             87
D24V4, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                           19                            160
  CLUS_3                           13                            117
D24V5, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           30                            131
  CLUS_2                           13                            201
  CLUS_3                           24                            164
D24V6, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            5                             33
  CLUS_2                            2                             18
  CLUS_3                            1                             23
  CLUS_4                            2                             25
D24V7, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                            5                             53
  CLUS_3                            4                             40
  CLUS_4                            7                             38
D24V8, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                            4                             29
  CLUS_3                           13                             91
D24V9, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                           16                             51
  CLUS_3                            4                             32
D24V10, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                            1                             20
  CLUS_3                            7                             53

Clustering(25) Variable = Del Peak  1(1p36.32) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           24                            148
  CLUS_2                           34                            136
  CLUS_3                           34                            133
D25V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           28                            189
  CLUS_2                           27                             99
  CLUS_3                           37                            129
D25V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           19                            120
  CLUS_2                           30                            127
  CLUS_3                           15                             57
  CLUS_4                           18                             86
D25V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           22                            141
  CLUS_2                           33                            146
  CLUS_3                           27                            103
D25V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           29                            132
  CLUS_2                           41                            173
  CLUS_3                           29                            159
D25V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                            3                             17
  CLUS_3                            3                             21
  CLUS_4                            3                             24
D25V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                           12                             46
  CLUS_3                           10                             34
  CLUS_4                           10                             35
D25V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           10                             54
  CLUS_2                            8                             25
  CLUS_3                           21                             83
D25V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            7                             60
  CLUS_3                            8                             28
D25V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                             61
  CLUS_2                            6                             15
  CLUS_3                            9                             51

Clustering(26) Variable = Del Peak  2(1p36.23) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           40                            132
  CLUS_2                           33                            137
  CLUS_3                           52                            115
D26V2, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           48                            169
  CLUS_2                           41                             85
  CLUS_3                           36                            130
D26V3, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           34                            105
  CLUS_2                           32                            125
  CLUS_3                           16                             56
  CLUS_4                           31                             73
D26V4, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           41                            122
  CLUS_2                           47                            132
  CLUS_3                           25                            105
D26V5, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           34                            127
  CLUS_2                           69                            145
  CLUS_3                           32                            156
D26V6, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           11                             27
  CLUS_2                            6                             14
  CLUS_3                            7                             17
  CLUS_4                            4                             23
D26V7, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           12                             46
  CLUS_3                           15                             29
  CLUS_4                           14                             31
D26V8, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           10                             23
  CLUS_3                           25                             79
D26V9, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                           16                             51
  CLUS_3                           14                             22
D26V10, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           13                             53
  CLUS_2                            9                             12
  CLUS_3                           15                             45

Clustering(27) Variable = Del Peak  3(1p32.3) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          21                           151
  CLUS_2                          22                           148
  CLUS_3                          14                           153
D27V2, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          22                           195
  CLUS_2                          12                           114
  CLUS_3                          23                           143
D27V3, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          16                           123
  CLUS_2                          19                           138
  CLUS_3                           7                            65
  CLUS_4                          12                            92
D27V4, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          17                           146
  CLUS_2                          21                           158
  CLUS_3                          16                           114
D27V5, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          23                           138
  CLUS_2                          16                           198
  CLUS_3                          21                           167
D27V6, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                           2                            18
  CLUS_3                           1                            23
  CLUS_4                           4                            23
D27V7, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           6                            52
  CLUS_3                           2                            42
  CLUS_4                           5                            40
D27V8, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           3                            30
  CLUS_3                          11                            93
D27V9, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           8                            36
  CLUS_2                           9                            58
  CLUS_3                           6                            30
D27V10, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           9                            57
  CLUS_2                           1                            20
  CLUS_3                          13                            47

Clustering(28) Variable = Del Peak  4(1p22.1) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          16                           156
  CLUS_2                          14                           156
  CLUS_3                          12                           155
D28V2, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          17                           200
  CLUS_2                          12                           114
  CLUS_3                          13                           153
D28V3, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          13                           126
  CLUS_2                          14                           143
  CLUS_3                           4                            68
  CLUS_4                           7                            97
D28V4, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           9                           154
  CLUS_2                          19                           160
  CLUS_3                          10                           120
D28V5, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          10                           151
  CLUS_2                          24                           190
  CLUS_3                          13                           175
D28V6, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                           3                            17
  CLUS_3                           0                            24
  CLUS_4                           3                            24
D28V7, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                           7                            51
  CLUS_3                           4                            40
  CLUS_4                           4                            41
D28V8, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           5                            28
  CLUS_3                          10                            94
D28V9, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           5                            62
  CLUS_3                           2                            34
D28V10, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           1                            65
  CLUS_2                           4                            17
  CLUS_3                           5                            55

Clustering(29) Variable = Del Peak  5(1q42.11) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           16                            156
  CLUS_2                           13                            157
  CLUS_3                           12                            155
D29V2, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           17                            200
  CLUS_2                            9                            117
  CLUS_3                           15                            151
D29V3, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           11                            128
  CLUS_2                            9                            148
  CLUS_3                            5                             67
  CLUS_4                           12                             92
D29V4, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            148
  CLUS_2                           12                            167
  CLUS_3                           10                            120
D29V5, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           14                            147
  CLUS_2                           15                            199
  CLUS_3                           18                            170
D29V6, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            5                             33
  CLUS_2                            1                             19
  CLUS_3                            1                             23
  CLUS_4                            4                             23
D29V7, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            7                             51
  CLUS_3                            1                             43
  CLUS_4                            7                             38
D29V8, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            7                             26
  CLUS_3                           13                             91
D29V9, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            5                             62
  CLUS_3                            2                             34
D29V10, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            4                             62
  CLUS_2                            2                             19
  CLUS_3                            6                             54

Clustering(30) Variable = Del Peak  6(1q44) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         7                         165
  CLUS_2                        11                         159
  CLUS_3                         9                         158
D30V2, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         8                         209
  CLUS_2                         7                         119
  CLUS_3                        12                         154
D30V3, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         6                         133
  CLUS_2                        11                         146
  CLUS_3                         4                          68
  CLUS_4                         4                         100
D30V4, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         6                         157
  CLUS_2                         9                         170
  CLUS_3                        10                         120
D30V5, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         7                         154
  CLUS_2                        12                         202
  CLUS_3                        13                         175
D30V6, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         2                          36
  CLUS_2                         2                          18
  CLUS_3                         1                          23
  CLUS_4                         5                          22
D30V7, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         3                          51
  CLUS_2                         5                          53
  CLUS_3                         2                          42
  CLUS_4                         4                          41
D30V8, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         2                          62
  CLUS_2                         3                          30
  CLUS_3                         9                          95
D30V9, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          40
  CLUS_2                         3                          64
  CLUS_3                         3                          33
D30V10, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          62
  CLUS_2                         1                          20
  CLUS_3                         5                          55

Clustering(31) Variable = Del Peak  7(2q22.1) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          11                           161
  CLUS_2                          22                           148
  CLUS_3                           9                           158
D31V2, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          15                           202
  CLUS_2                           7                           119
  CLUS_3                          20                           146
D31V3, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          10                           129
  CLUS_2                          12                           145
  CLUS_3                           9                            63
  CLUS_4                           6                            98
D31V4, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           8                           155
  CLUS_2                          13                           166
  CLUS_3                          16                           114
D31V5, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          26                           135
  CLUS_2                           4                           210
  CLUS_3                          14                           174
D31V6, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           1                            19
  CLUS_3                           0                            24
  CLUS_4                           7                            20
D31V7, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           3                            51
  CLUS_2                           2                            56
  CLUS_3                           3                            41
  CLUS_4                           5                            40
D31V8, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           2                            31
  CLUS_3                           8                            96
D31V9, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                           4                            63
  CLUS_3                           1                            35
D31V10, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           4                            62
  CLUS_2                           0                            21
  CLUS_3                           7                            53

Clustering(32) Variable = Del Peak  8(2q37.1) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          13                           159
  CLUS_2                          27                           143
  CLUS_3                          12                           155
D32V2, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          19                           198
  CLUS_2                           7                           119
  CLUS_3                          26                           140
D32V3, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           129
  CLUS_2                          19                           138
  CLUS_3                          11                            61
  CLUS_4                           9                            95
D32V4, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           153
  CLUS_2                          14                           165
  CLUS_3                          25                           105
D32V5, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          22                           139
  CLUS_2                          11                           203
  CLUS_3                          23                           165
D32V6, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           2                            36
  CLUS_2                           2                            18
  CLUS_3                           0                            24
  CLUS_4                           7                            20
D32V7, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           6                            48
  CLUS_2                           4                            54
  CLUS_3                           3                            41
  CLUS_4                           6                            39
D32V8, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                           4                            29
  CLUS_3                          10                            94
D32V9, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                           4                            63
  CLUS_3                           1                            35
D32V10, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           4                            62
  CLUS_2                           1                            20
  CLUS_3                           6                            54

Clustering(33) Variable = Del Peak  9(3p21.1) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          10                           162
  CLUS_2                          22                           148
  CLUS_3                          18                           149
D33V2, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          18                           199
  CLUS_2                          12                           114
  CLUS_3                          20                           146
D33V3, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          15                           124
  CLUS_2                          18                           139
  CLUS_3                           7                            65
  CLUS_4                           9                            95
D33V4, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          14                           149
  CLUS_2                          15                           164
  CLUS_3                          20                           110
D33V5, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          23                           138
  CLUS_2                           7                           207
  CLUS_3                          22                           166
D33V6, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           2                            36
  CLUS_2                           0                            20
  CLUS_3                           0                            24
  CLUS_4                           3                            24
D33V7, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           2                            56
  CLUS_3                           7                            37
  CLUS_4                           6                            39
D33V8, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           7                            57
  CLUS_2                           2                            31
  CLUS_3                          11                            93
D33V9, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           4                            40
  CLUS_2                           7                            60
  CLUS_3                           1                            35
D33V10, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           9                            57
  CLUS_2                           1                            20
  CLUS_3                           2                            58

Clustering(34) Variable = Del Peak 10(3q13.31) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           15                            157
  CLUS_2                           22                            148
  CLUS_3                           15                            152
D34V2, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           20                            197
  CLUS_2                           13                            113
  CLUS_3                           19                            147
D34V3, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           14                            125
  CLUS_2                           18                            139
  CLUS_3                            8                             64
  CLUS_4                           11                             93
D34V4, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           15                            148
  CLUS_2                           21                            158
  CLUS_3                           15                            115
D34V5, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           27                            134
  CLUS_2                            6                            208
  CLUS_3                           22                            166
D34V6, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            1                             37
  CLUS_2                            2                             18
  CLUS_3                            0                             24
  CLUS_4                            3                             24
D34V7, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            4                             54
  CLUS_3                            4                             40
  CLUS_4                            4                             41
D34V8, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                            2                             31
  CLUS_3                           11                             93
D34V9, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            3                             41
  CLUS_2                            5                             62
  CLUS_3                            2                             34
D34V10, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            8                             58
  CLUS_2                            1                             20
  CLUS_3                            1                             59

Clustering(35) Variable = Del Peak 11(3q22.1) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          14                           158
  CLUS_2                          19                           151
  CLUS_3                          20                           147
D35V2, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          21                           196
  CLUS_2                          16                           110
  CLUS_3                          16                           150
D35V3, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          18                           121
  CLUS_2                          18                           139
  CLUS_3                           8                            64
  CLUS_4                           8                            96
D35V4, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          14                           149
  CLUS_2                          24                           155
  CLUS_3                          14                           116
D35V5, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          24                           137
  CLUS_2                           8                           206
  CLUS_3                          23                           165
D35V6, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           0                            20
  CLUS_3                           1                            23
  CLUS_4                           3                            24
D35V7, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           4                            54
  CLUS_3                           5                            39
  CLUS_4                           4                            41
D35V8, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           6                            58
  CLUS_2                           2                            31
  CLUS_3                          10                            94
D35V9, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           4                            63
  CLUS_3                           2                            34
D35V10, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           7                            59
  CLUS_2                           1                            20
  CLUS_3                           1                            59

Clustering(36) Variable = Del Peak 12(3q29) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        13                         159
  CLUS_2                        21                         149
  CLUS_3                        24                         143
D36V2, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        19                         198
  CLUS_2                        20                         106
  CLUS_3                        19                         147
D36V3, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        18                         121
  CLUS_2                        23                         134
  CLUS_3                         7                          65
  CLUS_4                        10                          94
D36V4, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        20                         143
  CLUS_2                        23                         156
  CLUS_3                        15                         115
D36V5, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        29                         132
  CLUS_2                        16                         198
  CLUS_3                        19                         169
D36V6, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         1                          37
  CLUS_2                         1                          19
  CLUS_3                         4                          20
  CLUS_4                         4                          23
D36V7, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                         6                          52
  CLUS_3                         9                          35
  CLUS_4                         6                          39
D36V8, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        10                          54
  CLUS_2                         3                          30
  CLUS_3                        13                          91
D36V9, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         7                          37
  CLUS_2                         9                          58
  CLUS_3                         5                          31
D36V10, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         9                          57
  CLUS_2                         4                          17
  CLUS_3                         8                          52

Clustering(37) Variable = Del Peak 13(4p16.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          24                           148
  CLUS_2                          34                           136
  CLUS_3                          15                           152
D37V2, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          33                           184
  CLUS_2                          10                           116
  CLUS_3                          30                           136
D37V3, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          17                           122
  CLUS_2                          31                           126
  CLUS_3                          10                            62
  CLUS_4                          16                            88
D37V4, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          19                           144
  CLUS_2                          30                           149
  CLUS_3                          25                           105
D37V5, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          31                           130
  CLUS_2                          23                           191
  CLUS_3                          24                           164
D37V6, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                           2                            18
  CLUS_3                           2                            22
  CLUS_4                           2                            25
D37V7, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           7                            47
  CLUS_2                           7                            51
  CLUS_3                           7                            37
  CLUS_4                           8                            37
D37V8, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          10                            54
  CLUS_2                           3                            30
  CLUS_3                          16                            88
D37V9, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           7                            37
  CLUS_2                           9                            58
  CLUS_3                           6                            30
D37V10, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          11                            55
  CLUS_2                           2                            19
  CLUS_3                           9                            51

Clustering(38) Variable = Del Peak 14(4q34.3) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          18                           154
  CLUS_2                          45                           125
  CLUS_3                          20                           147
D38V2, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          28                           189
  CLUS_2                          16                           110
  CLUS_3                          39                           127
D38V3, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          14                           125
  CLUS_2                          32                           125
  CLUS_3                          12                            60
  CLUS_4                          19                            85
D38V4, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          19                           144
  CLUS_2                          29                           150
  CLUS_3                          29                           101
D38V5, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          41                           120
  CLUS_2                          20                           194
  CLUS_3                          29                           159
D38V6, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                           4                            16
  CLUS_3                           1                            23
  CLUS_4                           8                            19
D38V7, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                          14                            44
  CLUS_3                           8                            36
  CLUS_4                           9                            36
D38V8, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          10                            54
  CLUS_2                           3                            30
  CLUS_3                          22                            82
D38V9, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                           9                            58
  CLUS_3                           8                            28
D38V10, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          13                            53
  CLUS_2                           4                            17
  CLUS_3                          13                            47

Clustering(39) Variable = Del Peak 15(5q35.3) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          12                           160
  CLUS_2                          32                           138
  CLUS_3                           7                           160
D39V2, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          16                           201
  CLUS_2                           7                           119
  CLUS_3                          28                           138
D39V3, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           6                           133
  CLUS_2                          26                           131
  CLUS_3                           9                            63
  CLUS_4                           6                            98
D39V4, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           6                           157
  CLUS_2                          15                           164
  CLUS_3                          26                           104
D39V5, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          18                           143
  CLUS_2                           7                           207
  CLUS_3                          29                           159
D39V6, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           1                            19
  CLUS_3                           1                            23
  CLUS_4                           7                            20
D39V7, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           3                            51
  CLUS_2                           6                            52
  CLUS_3                           3                            41
  CLUS_4                           4                            41
D39V8, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           2                            31
  CLUS_3                          11                            93
D39V9, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                           6                            61
  CLUS_3                           4                            32
D39V10, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           8                            58
  CLUS_2                           2                            19
  CLUS_3                           9                            51

Clustering(40) Variable = Del Peak 16(6q22.31) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           51                            121
  CLUS_2                           46                            124
  CLUS_3                           47                            120
D40V2, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           62                            155
  CLUS_2                           39                             87
  CLUS_3                           43                            123
D40V3, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           41                             98
  CLUS_2                           48                            109
  CLUS_3                           17                             55
  CLUS_4                           25                             79
D40V4, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           36                            127
  CLUS_2                           62                            117
  CLUS_3                           33                             97
D40V5, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           77                             84
  CLUS_2                           42                            172
  CLUS_3                           34                            154
D40V6, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                           10                             10
  CLUS_3                            7                             17
  CLUS_4                            5                             22
D40V7, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                            9                             49
  CLUS_3                           12                             32
  CLUS_4                           13                             32
D40V8, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           19                             45
  CLUS_2                           11                             22
  CLUS_3                           21                             83
D40V9, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           26                             41
  CLUS_3                           13                             23
D40V10, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                           10                             11
  CLUS_3                           19                             41

Clustering(41) Variable = Del Peak 17(6q26) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        55                         117
  CLUS_2                        50                         120
  CLUS_3                        55                         112
D41V2, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        66                         151
  CLUS_2                        47                          79
  CLUS_3                        47                         119
D41V3, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        45                          94
  CLUS_2                        52                         105
  CLUS_3                        21                          51
  CLUS_4                        30                          74
D41V4, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        44                         119
  CLUS_2                        66                         113
  CLUS_3                        38                          92
D41V5, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        75                          86
  CLUS_2                        58                         156
  CLUS_3                        40                         148
D41V6, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        11                          27
  CLUS_2                         8                          12
  CLUS_3                         8                          16
  CLUS_4                         7                          20
D41V7, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        22                          32
  CLUS_2                        10                          48
  CLUS_3                        18                          26
  CLUS_4                        17                          28
D41V8, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        26                          38
  CLUS_2                        16                          17
  CLUS_3                        25                          79
D41V9, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        15                          29
  CLUS_2                        26                          41
  CLUS_3                        15                          21
D41V10, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        25                          41
  CLUS_2                        11                          10
  CLUS_3                        20                          40

Clustering(42) Variable = Del Peak 18(8p23.2) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          24                           148
  CLUS_2                          21                           149
  CLUS_3                          17                           150
D42V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          34                           183
  CLUS_2                          12                           114
  CLUS_3                          16                           150
D42V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          23                           116
  CLUS_2                          19                           138
  CLUS_3                           5                            67
  CLUS_4                          14                            90
D42V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          20                           143
  CLUS_2                          28                           151
  CLUS_3                          13                           117
D42V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          28                           133
  CLUS_2                          19                           195
  CLUS_3                          20                           168
D42V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                           1                            19
  CLUS_3                           3                            21
  CLUS_4                           2                            25
D42V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                           6                            52
  CLUS_3                           4                            40
  CLUS_4                           5                            40
D42V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           7                            57
  CLUS_2                           3                            30
  CLUS_3                           9                            95
D42V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           9                            58
  CLUS_3                           4                            32
D42V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          11                            55
  CLUS_2                           1                            20
  CLUS_3                           4                            56

Clustering(43) Variable = Del Peak 19(9p21.3) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         115                            57
  CLUS_2                         111                            59
  CLUS_3                         144                            23
D43V2, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         149                            68
  CLUS_2                         113                            13
  CLUS_3                         108                            58
D43V3, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         104                            35
  CLUS_2                         106                            51
  CLUS_3                          53                            19
  CLUS_4                          75                            29
D43V4, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         124                            39
  CLUS_2                         137                            42
  CLUS_3                          77                            53
D43V5, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         108                            53
  CLUS_2                         187                            27
  CLUS_3                         113                            75
D43V6, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          23                            15
  CLUS_2                          16                             4
  CLUS_3                          23                             1
  CLUS_4                          21                             6
D43V7, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          43                            11
  CLUS_2                          38                            20
  CLUS_3                          38                             6
  CLUS_4                          36                             9
D43V8, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          56                             8
  CLUS_2                          27                             6
  CLUS_3                          72                            32
D43V9, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          24                            20
  CLUS_2                          52                            15
  CLUS_3                          27                             9
D43V10, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          48                            18
  CLUS_2                          20                             1
  CLUS_3                          35                            25

Clustering(44) Variable = Del Peak 20(9q34.2) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          18                           154
  CLUS_2                          21                           149
  CLUS_3                          27                           140
D44V2, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          22                           195
  CLUS_2                          24                           102
  CLUS_3                          20                           146
D44V3, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          17                           122
  CLUS_2                          24                           133
  CLUS_3                           8                            64
  CLUS_4                          14                            90
D44V4, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          19                           144
  CLUS_2                          29                           150
  CLUS_3                          15                           115
D44V5, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          26                           135
  CLUS_2                          24                           190
  CLUS_3                          21                           167
D44V6, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                           1                            19
  CLUS_3                           1                            23
  CLUS_4                           3                            24
D44V7, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           9                            45
  CLUS_2                           2                            56
  CLUS_3                           3                            41
  CLUS_4                           4                            41
D44V8, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                           4                            29
  CLUS_3                           6                            98
D44V9, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                          13                            54
  CLUS_3                           4                            32
D44V10, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           8                            58
  CLUS_2                           7                            14
  CLUS_3                           7                            53

Clustering(45) Variable = Del Peak 21(10p15.3) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          145                             27
  CLUS_2                          118                             52
  CLUS_3                          145                             22
D45V2, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          182                             35
  CLUS_2                          112                             14
  CLUS_3                          114                             52
D45V3, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          123                             16
  CLUS_2                          116                             41
  CLUS_3                           56                             16
  CLUS_4                           84                             20
D45V4, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          143                             20
  CLUS_2                          154                             25
  CLUS_3                           82                             48
D45V5, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          137                             24
  CLUS_2                          201                             13
  CLUS_3                          119                             69
D45V6, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           33                              5
  CLUS_2                           20                              0
  CLUS_3                           23                              1
  CLUS_4                           20                              7
D45V7, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           48                              6
  CLUS_2                           41                             17
  CLUS_3                           42                              2
  CLUS_4                           37                              8
D45V8, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           59                              5
  CLUS_2                           29                              4
  CLUS_3                           80                             24
D45V9, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           33                             11
  CLUS_2                           59                              8
  CLUS_3                           35                              1
D45V10, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           59                              7
  CLUS_2                           19                              2
  CLUS_3                           49                             11

Clustering(46) Variable = Del Peak 22(10p13) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        148                           24
  CLUS_2                        116                           54
  CLUS_3                        146                           21
D46V2, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        186                           31
  CLUS_2                        112                           14
  CLUS_3                        112                           54
D46V3, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        125                           14
  CLUS_2                        117                           40
  CLUS_3                         54                           18
  CLUS_4                         86                           18
D46V4, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        145                           18
  CLUS_2                        154                           25
  CLUS_3                         83                           47
D46V5, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        137                           24
  CLUS_2                        203                           11
  CLUS_3                        119                           69
D46V6, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         33                            5
  CLUS_2                         20                            0
  CLUS_3                         23                            1
  CLUS_4                         20                            7
D46V7, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         50                            4
  CLUS_2                         38                           20
  CLUS_3                         42                            2
  CLUS_4                         37                            8
D46V8, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         60                            4
  CLUS_2                         29                            4
  CLUS_3                         78                           26
D46V9, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         34                           10
  CLUS_2                         59                            8
  CLUS_3                         34                            2
D46V10, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         59                            7
  CLUS_2                         19                            2
  CLUS_3                         49                           11

Clustering(47) Variable = Del Peak 23(10p11.23) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           145                              27
  CLUS_2                           118                              52
  CLUS_3                           153                              14
D47V2, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           185                              32
  CLUS_2                           117                               9
  CLUS_3                           114                              52
D47V3, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           128                              11
  CLUS_2                           119                              38
  CLUS_3                            54                              18
  CLUS_4                            86                              18
D47V4, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           145                              18
  CLUS_2                           159                              20
  CLUS_3                            83                              47
D47V5, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           138                              23
  CLUS_2                           205                               9
  CLUS_3                           120                              68
D47V6, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            34                               4
  CLUS_2                            19                               1
  CLUS_3                            23                               1
  CLUS_4                            19                               8
D47V7, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            50                               4
  CLUS_2                            40                              18
  CLUS_3                            42                               2
  CLUS_4                            38                               7
D47V8, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            60                               4
  CLUS_2                            29                               4
  CLUS_3                            81                              23
D47V9, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            34                              10
  CLUS_2                            61                               6
  CLUS_3                            34                               2
D47V10, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            59                               7
  CLUS_2                            21                               0
  CLUS_3                            49                              11

Clustering(48) Variable = Del Peak 24(10q23.31) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           154                              18
  CLUS_2                           136                              34
  CLUS_3                           159                               8
D48V2, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           195                              22
  CLUS_2                           122                               4
  CLUS_3                           132                              34
D48V3, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           132                               7
  CLUS_2                           135                              22
  CLUS_3                            58                              14
  CLUS_4                            93                              11
D48V4, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           150                              13
  CLUS_2                           167                              12
  CLUS_3                           101                              29
D48V5, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           149                              12
  CLUS_2                           212                               2
  CLUS_3                           138                              50
D48V6, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            34                               4
  CLUS_2                            20                               0
  CLUS_3                            23                               1
  CLUS_4                            22                               5
D48V7, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            50                               4
  CLUS_2                            45                              13
  CLUS_3                            42                               2
  CLUS_4                            43                               2
D48V8, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            61                               3
  CLUS_2                            30                               3
  CLUS_3                            89                              15
D48V9, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            38                               6
  CLUS_2                            63                               4
  CLUS_3                            33                               3
D48V10, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            61                               5
  CLUS_2                            21                               0
  CLUS_3                            52                               8

Clustering(49) Variable = Del Peak 25(10q26.3) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          154                             18
  CLUS_2                          137                             33
  CLUS_3                          159                              8
D49V2, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          194                             23
  CLUS_2                          123                              3
  CLUS_3                          133                             33
D49V3, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          129                             10
  CLUS_2                          139                             18
  CLUS_3                           58                             14
  CLUS_4                           92                             12
D49V4, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          147                             16
  CLUS_2                          168                             11
  CLUS_3                          103                             27
D49V5, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          147                             14
  CLUS_2                          211                              3
  CLUS_3                          142                             46
D49V6, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           35                              3
  CLUS_2                           20                              0
  CLUS_3                           24                              0
  CLUS_4                           21                              6
D49V7, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           48                              6
  CLUS_2                           49                              9
  CLUS_3                           43                              1
  CLUS_4                           42                              3
D49V8, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           62                              2
  CLUS_2                           30                              3
  CLUS_3                           90                             14
D49V9, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           38                              6
  CLUS_2                           61                              6
  CLUS_3                           35                              1
D49V10, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           59                              7
  CLUS_2                           21                              0
  CLUS_3                           54                              6

Clustering(50) Variable = Del Peak 26(11p15.5) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           40                            132
  CLUS_2                           65                            105
  CLUS_3                           15                            152
D50V2, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           48                            169
  CLUS_2                           14                            112
  CLUS_3                           58                            108
D50V3, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           32                            107
  CLUS_2                           46                            111
  CLUS_3                           18                             54
  CLUS_4                           19                             85
D50V4, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                           32                            147
  CLUS_3                           54                             76
D50V5, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           63                             98
  CLUS_2                           13                            201
  CLUS_3                           51                            137
D50V6, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                            0                             38
  CLUS_2                            4                             16
  CLUS_3                            1                             23
  CLUS_4                            9                             18
D50V7, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           17                             41
  CLUS_3                            6                             38
  CLUS_4                            8                             37
D50V8, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           10                             54
  CLUS_2                            4                             29
  CLUS_3                           28                             76
D50V9, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           11                             56
  CLUS_3                            4                             32
D50V10, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           13                             53
  CLUS_2                            3                             18
  CLUS_3                           18                             42

Clustering(51) Variable = Del Peak 27(11p11.2) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           33                            139
  CLUS_2                           50                            120
  CLUS_3                           12                            155
D51V2, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           37                            180
  CLUS_2                           13                            113
  CLUS_3                           45                            121
D51V3, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           25                            114
  CLUS_2                           33                            124
  CLUS_3                           13                             59
  CLUS_4                           20                             84
D51V4, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                           20                            159
  CLUS_3                           42                             88
D51V5, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           55                            106
  CLUS_2                           10                            204
  CLUS_3                           36                            152
D51V6, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            0                             38
  CLUS_2                            4                             16
  CLUS_3                            1                             23
  CLUS_4                            7                             20
D51V7, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                            9                             49
  CLUS_3                            7                             37
  CLUS_4                            6                             39
D51V8, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                            4                             29
  CLUS_3                           20                             84
D51V9, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           11                             56
  CLUS_3                            3                             33
D51V10, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           11                             55
  CLUS_2                            3                             18
  CLUS_3                           13                             47

Clustering(52) Variable = Del Peak 28(11q14.1) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           35                            137
  CLUS_2                           40                            130
  CLUS_3                           14                            153
D52V2, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           41                            176
  CLUS_2                           12                            114
  CLUS_3                           36                            130
D52V3, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           25                            114
  CLUS_2                           28                            129
  CLUS_3                           15                             57
  CLUS_4                           18                             86
D52V4, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           30                            133
  CLUS_2                           22                            157
  CLUS_3                           34                             96
D52V5, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           61                            100
  CLUS_2                           10                            204
  CLUS_3                           24                            164
D52V6, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            1                             37
  CLUS_2                            3                             17
  CLUS_3                            2                             22
  CLUS_4                            4                             23
D52V7, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                            5                             53
  CLUS_3                            6                             38
  CLUS_4                            8                             37
D52V8, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                            3                             30
  CLUS_3                           17                             87
D52V9, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           13                             54
  CLUS_3                            2                             34
D52V10, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           13                             53
  CLUS_2                            3                             18
  CLUS_3                            9                             51

Clustering(53) Variable = Del Peak 29(12p13.1) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           20                            152
  CLUS_2                           36                            134
  CLUS_3                           10                            157
D53V2, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           24                            193
  CLUS_2                            8                            118
  CLUS_3                           34                            132
D53V3, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           16                            123
  CLUS_2                           27                            130
  CLUS_3                           13                             59
  CLUS_4                            9                             95
D53V4, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           17                            146
  CLUS_2                           22                            157
  CLUS_3                           26                            104
D53V5, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           27                            134
  CLUS_2                           20                            194
  CLUS_3                           28                            160
D53V6, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            1                             19
  CLUS_3                            3                             21
  CLUS_4                            3                             24
D53V7, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            5                             49
  CLUS_2                            8                             50
  CLUS_3                            6                             38
  CLUS_4                            6                             39
D53V8, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                            2                             31
  CLUS_3                           15                             89
D53V9, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                            7                             60
  CLUS_3                            4                             32
D53V10, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                            3                             18
  CLUS_3                            5                             55

Clustering(54) Variable = Del Peak 30(12q12) mutation analysis
D54V1, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         19                          153
  CLUS_2                         38                          132
  CLUS_3                         12                          155
D54V2, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         24                          193
  CLUS_2                         10                          116
  CLUS_3                         35                          131
D54V3, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         14                          125
  CLUS_2                         29                          128
  CLUS_3                         10                           62
  CLUS_4                         12                           92
D54V4, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         14                          149
  CLUS_2                         23                          156
  CLUS_3                         28                          102
D54V5, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         35                          126
  CLUS_2                         15                          199
  CLUS_3                         26                          162
D54V6, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          4                           34
  CLUS_2                          4                           16
  CLUS_3                          0                           24
  CLUS_4                          5                           22
D54V7, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          5                           49
  CLUS_2                         11                           47
  CLUS_3                          6                           38
  CLUS_4                          2                           43
D54V8, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          7                           57
  CLUS_2                          2                           31
  CLUS_3                         15                           89
D54V9, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          5                           39
  CLUS_2                          7                           60
  CLUS_3                          3                           33
D54V10, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          8                           58
  CLUS_2                          2                           19
  CLUS_3                          5                           55

Clustering(55) Variable = Del Peak 31(12q15) mutation analysis
D55V1, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         24                          148
  CLUS_2                         35                          135
  CLUS_3                         10                          157
D55V2, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         28                          189
  CLUS_2                          6                          120
  CLUS_3                         35                          131
D55V3, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         15                          124
  CLUS_2                         29                          128
  CLUS_3                          8                           64
  CLUS_4                         16                           88
D55V4, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         16                          147
  CLUS_2                         26                          153
  CLUS_3                         26                          104
D55V5, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         40                          121
  CLUS_2                         12                          202
  CLUS_3                         25                          163
D55V6, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          3                           35
  CLUS_2                          4                           16
  CLUS_3                          1                           23
  CLUS_4                          5                           22
D55V7, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          7                           47
  CLUS_2                          9                           49
  CLUS_3                          4                           40
  CLUS_4                          3                           42
D55V8, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          6                           58
  CLUS_2                          3                           30
  CLUS_3                         14                           90
D55V9, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          7                           37
  CLUS_2                          8                           59
  CLUS_3                          3                           33
D55V10, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          9                           57
  CLUS_2                          2                           19
  CLUS_3                          7                           53

Clustering(56) Variable = Del Peak 32(13q14.2) mutation analysis
D56V1, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           90                             82
  CLUS_2                           82                             88
  CLUS_3                           43                            124
D56V2, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                          107                            110
  CLUS_2                           29                             97
  CLUS_3                           79                             87
D56V3, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           65                             74
  CLUS_2                           65                             92
  CLUS_3                           38                             34
  CLUS_4                           37                             67
D56V4, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           68                             95
  CLUS_2                           70                            109
  CLUS_3                           67                             63
D56V5, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                          100                             61
  CLUS_2                           46                            168
  CLUS_3                           90                             98
D56V6, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           14                             24
  CLUS_2                            4                             16
  CLUS_3                            5                             19
  CLUS_4                           15                             12
D56V7, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                           24                             34
  CLUS_3                           15                             29
  CLUS_4                           20                             25
D56V8, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           19                             45
  CLUS_2                           15                             18
  CLUS_3                           47                             57
D56V9, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           23                             21
  CLUS_2                           27                             40
  CLUS_3                           10                             26
D56V10, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           32                             34
  CLUS_2                            6                             15
  CLUS_3                           22                             38

Clustering(57) Variable = Del Peak 33(14q13.1) mutation analysis
D57V1, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           67                            105
  CLUS_2                           68                            102
  CLUS_3                           28                            139
D57V2, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           73                            144
  CLUS_2                           29                             97
  CLUS_3                           61                            105
D57V3, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           42                             97
  CLUS_2                           56                            101
  CLUS_3                           20                             52
  CLUS_4                           32                             72
D57V4, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           50                            113
  CLUS_2                           63                            116
  CLUS_3                           37                             93
D57V5, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                          104                             57
  CLUS_2                           20                            194
  CLUS_3                           51                            137
D57V6, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           12                             26
  CLUS_2                            8                             12
  CLUS_3                            4                             20
  CLUS_4                           13                             14
D57V7, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           20                             34
  CLUS_2                           21                             37
  CLUS_3                           11                             33
  CLUS_4                           16                             29
D57V8, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           10                             23
  CLUS_3                           40                             64
D57V9, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           22                             22
  CLUS_2                           26                             41
  CLUS_3                           12                             24
D57V10, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           27                             39
  CLUS_2                            7                             14
  CLUS_3                           26                             34

Clustering(58) Variable = Del Peak 34(14q24.2) mutation analysis
D58V1, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           61                            111
  CLUS_2                           74                             96
  CLUS_3                           27                            140
D58V2, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           69                            148
  CLUS_2                           27                             99
  CLUS_3                           66                            100
D58V3, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           35                            104
  CLUS_2                           62                             95
  CLUS_3                           21                             51
  CLUS_4                           33                             71
D58V4, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           51                            112
  CLUS_2                           60                            119
  CLUS_3                           40                             90
D58V5, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                          107                             54
  CLUS_2                           11                            203
  CLUS_3                           52                            136
D58V6, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           10                             28
  CLUS_2                            5                             15
  CLUS_3                            2                             22
  CLUS_4                           12                             15
D58V7, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           19                             35
  CLUS_2                           19                             39
  CLUS_3                           10                             34
  CLUS_4                           11                             34
D58V8, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           10                             23
  CLUS_3                           35                             69
D58V9, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           23                             21
  CLUS_2                           22                             45
  CLUS_3                           10                             26
D58V10, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           25                             41
  CLUS_2                            4                             17
  CLUS_3                           26                             34

Clustering(59) Variable = Del Peak 35(14q31.3) mutation analysis
D59V1, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           61                            111
  CLUS_2                           66                            104
  CLUS_3                           21                            146
D59V2, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           67                            150
  CLUS_2                           22                            104
  CLUS_3                           59                            107
D59V3, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           34                            105
  CLUS_2                           52                            105
  CLUS_3                           22                             50
  CLUS_4                           29                             75
D59V4, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           49                            114
  CLUS_2                           53                            126
  CLUS_3                           35                             95
D59V5, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                          102                             59
  CLUS_2                            6                            208
  CLUS_3                           48                            140
D59V6, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           10                             28
  CLUS_2                            6                             14
  CLUS_3                            1                             23
  CLUS_4                           12                             15
D59V7, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                           19                             39
  CLUS_3                           10                             34
  CLUS_4                           10                             35
D59V8, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                            9                             24
  CLUS_3                           35                             69
D59V9, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           20                             24
  CLUS_2                           20                             47
  CLUS_3                           11                             25
D59V10, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                            3                             18
  CLUS_3                           24                             36

Clustering(60) Variable = Del Peak 36(15q14) mutation analysis
D60V1, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         42                          130
  CLUS_2                         74                           96
  CLUS_3                         24                          143
D60V2, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         53                          164
  CLUS_2                         20                          106
  CLUS_3                         67                           99
D60V3, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         31                          108
  CLUS_2                         56                          101
  CLUS_3                         23                           49
  CLUS_4                         20                           84
D60V4, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         24                          139
  CLUS_2                         52                          127
  CLUS_3                         54                           76
D60V5, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         69                           92
  CLUS_2                         39                          175
  CLUS_3                         43                          145
D60V6, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                          4                           34
  CLUS_2                          7                           13
  CLUS_3                          0                           24
  CLUS_4                         11                           16
D60V7, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         12                           42
  CLUS_2                         22                           36
  CLUS_3                          7                           37
  CLUS_4                         10                           35
D60V8, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                          9                           55
  CLUS_2                          8                           25
  CLUS_3                         34                           70
D60V9, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         24                           20
  CLUS_2                         14                           53
  CLUS_3                          7                           29
D60V10, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         20                           46
  CLUS_2                          3                           18
  CLUS_3                         22                           38

Clustering(61) Variable = Del Peak 37(16p12.2) mutation analysis
D61V1, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           29                            143
  CLUS_2                           33                            137
  CLUS_3                           22                            145
D61V2, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           39                            178
  CLUS_2                           17                            109
  CLUS_3                           28                            138
D61V3, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           23                            116
  CLUS_2                           17                            140
  CLUS_3                           15                             57
  CLUS_4                           23                             81
D61V4, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           31                            132
  CLUS_2                           27                            152
  CLUS_3                           20                            110
D61V5, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           31                            130
  CLUS_2                           25                            189
  CLUS_3                           33                            155
D61V6, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            8                             30
  CLUS_2                            1                             19
  CLUS_3                            2                             22
  CLUS_4                            5                             22
D61V7, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                           13                             45
  CLUS_3                            5                             39
  CLUS_4                            9                             36
D61V8, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           10                             54
  CLUS_2                            6                             27
  CLUS_3                           24                             80
D61V9, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           16                             51
  CLUS_3                            7                             29
D61V10, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                            4                             17
  CLUS_3                            9                             51

Clustering(62) Variable = Del Peak 38(16q23.3) mutation analysis
D62V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           34                            138
  CLUS_2                           32                            138
  CLUS_3                           21                            146
D62V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           40                            177
  CLUS_2                           16                            110
  CLUS_3                           31                            135
D62V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           22                            117
  CLUS_2                           24                            133
  CLUS_3                           12                             60
  CLUS_4                           21                             83
D62V4, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           27                            136
  CLUS_2                           30                            149
  CLUS_3                           22                            108
D62V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           37                            124
  CLUS_2                           23                            191
  CLUS_3                           35                            153
D62V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                            2                             18
  CLUS_3                            4                             20
  CLUS_4                            6                             21
D62V7, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                            8                             50
  CLUS_3                            5                             39
  CLUS_4                           13                             32
D62V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                           10                             23
  CLUS_3                           24                             80
D62V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           18                             49
  CLUS_3                            7                             29
D62V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           18                             48
  CLUS_2                            4                             17
  CLUS_3                           11                             49

Clustering(63) Variable = Del Peak 39(17p13.2) mutation analysis
D63V1, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           29                            143
  CLUS_2                           30                            140
  CLUS_3                           19                            148
D63V2, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           36                            181
  CLUS_2                           16                            110
  CLUS_3                           26                            140
D63V3, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           24                            115
  CLUS_2                           23                            134
  CLUS_3                           12                             60
  CLUS_4                           16                             88
D63V4, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           25                            138
  CLUS_2                           27                            152
  CLUS_3                           23                            107
D63V5, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           43                            118
  CLUS_2                            8                            206
  CLUS_3                           34                            154
D63V6, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                            4                             34
  CLUS_2                            2                             18
  CLUS_3                            1                             23
  CLUS_4                            6                             21
D63V7, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                            8                             50
  CLUS_3                            4                             40
  CLUS_4                            6                             39
D63V8, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                            5                             28
  CLUS_3                           17                             87
D63V9, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           14                             53
  CLUS_3                            5                             31
D63V10, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           15                             51
  CLUS_2                            2                             19
  CLUS_3                            8                             52

Clustering(64) Variable = Del Peak 40(17p13.1) mutation analysis
D64V1, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           33                            139
  CLUS_2                           36                            134
  CLUS_3                           19                            148
D64V2, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           41                            176
  CLUS_2                           15                            111
  CLUS_3                           32                            134
D64V3, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           27                            112
  CLUS_2                           29                            128
  CLUS_3                           13                             59
  CLUS_4                           16                             88
D64V4, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           27                            136
  CLUS_2                           31                            148
  CLUS_3                           27                            103
D64V5, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           53                            108
  CLUS_2                            6                            208
  CLUS_3                           36                            152
D64V6, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            2                             18
  CLUS_3                            1                             23
  CLUS_4                            7                             20
D64V7, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           10                             48
  CLUS_3                            5                             39
  CLUS_4                            8                             37
D64V8, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                            5                             28
  CLUS_3                           21                             83
D64V9, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           15                             52
  CLUS_3                            5                             31
D64V10, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           17                             49
  CLUS_2                            3                             18
  CLUS_3                            9                             51

Clustering(65) Variable = Del Peak 41(17q11.2) mutation analysis
D65V1, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           36                            136
  CLUS_2                           10                            160
  CLUS_3                           16                            151
D65V2, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           39                            178
  CLUS_2                           14                            112
  CLUS_3                            9                            157
D65V3, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           25                            114
  CLUS_2                           11                            146
  CLUS_3                            4                             68
  CLUS_4                           19                             85
D65V4, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                           22                            157
  CLUS_3                            8                            122
D65V5, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           31                            130
  CLUS_2                            8                            206
  CLUS_3                           32                            156
D65V6, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            6                             32
  CLUS_2                            1                             19
  CLUS_3                            2                             22
  CLUS_4                            4                             23
D65V7, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                            2                             56
  CLUS_3                            3                             41
  CLUS_4                            6                             39
D65V8, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           10                             23
  CLUS_3                            9                             95
D65V9, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                           11                             56
  CLUS_3                            4                             32
D65V10, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           13                             53
  CLUS_2                            1                             20
  CLUS_3                            5                             55

Clustering(66) Variable = Del Peak 42(18q22.3) mutation analysis
D66V1, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           26                            146
  CLUS_2                           28                            142
  CLUS_3                           14                            153
D66V2, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           33                            184
  CLUS_2                           12                            114
  CLUS_3                           23                            143
D66V3, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           22                            117
  CLUS_2                           25                            132
  CLUS_3                            7                             65
  CLUS_4                           12                             92
D66V4, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           20                            143
  CLUS_2                           30                            149
  CLUS_3                           16                            114
D66V5, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           35                            126
  CLUS_2                           19                            195
  CLUS_3                           25                            163
D66V6, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            5                             15
  CLUS_3                            0                             24
  CLUS_4                            8                             19
D66V7, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                           13                             45
  CLUS_3                            4                             40
  CLUS_4                           11                             34
D66V8, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            4                             60
  CLUS_2                            2                             31
  CLUS_3                           26                             78
D66V9, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                            6                             61
  CLUS_3                            7                             29
D66V10, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                            2                             19
  CLUS_3                           11                             49

Clustering(67) Variable = Del Peak 43(19q13.41) mutation analysis
D67V1, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            23                             149
  CLUS_2                            52                             118
  CLUS_3                            17                             150
D67V2, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            34                             183
  CLUS_2                            12                             114
  CLUS_3                            46                             120
D67V3, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            16                             123
  CLUS_2                            44                             113
  CLUS_3                            11                              61
  CLUS_4                            15                              89
D67V4, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            22                             141
  CLUS_2                            26                             153
  CLUS_3                            38                              92
D67V5, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            36                             125
  CLUS_2                            22                             192
  CLUS_3                            41                             147
D67V6, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                             5                              33
  CLUS_2                             2                              18
  CLUS_3                             5                              19
  CLUS_4                             6                              21
D67V7, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                             4                              50
  CLUS_2                            15                              43
  CLUS_3                            11                              33
  CLUS_4                             8                              37
D67V8, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            12                              52
  CLUS_2                             4                              29
  CLUS_3                            22                              82
D67V9, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                             9                              35
  CLUS_2                             6                              61
  CLUS_3                            11                              25
D67V10, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            10                              56
  CLUS_2                             1                              20
  CLUS_3                            15                              45

Clustering(68) Variable = Del Peak 44(21q22.3) mutation analysis
D68V1, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                            8                            164
  CLUS_2                           28                            142
  CLUS_3                           18                            149
D68V2, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                           14                            203
  CLUS_2                           15                            111
  CLUS_3                           25                            141
D68V3, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                            8                            131
  CLUS_2                           32                            125
  CLUS_3                            8                             64
  CLUS_4                            5                             99
D68V4, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                            8                            155
  CLUS_2                           23                            156
  CLUS_3                           22                            108
D68V5, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                           23                            138
  CLUS_2                           17                            197
  CLUS_3                           19                            169
D68V6, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                            1                             37
  CLUS_2                            1                             19
  CLUS_3                            2                             22
  CLUS_4                            5                             22
D68V7, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                            3                             51
  CLUS_2                            5                             53
  CLUS_3                            7                             37
  CLUS_4                            4                             41
D68V8, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                           10                             54
  CLUS_2                            1                             32
  CLUS_3                            8                             96
D68V9, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                            3                             41
  CLUS_2                            5                             62
  CLUS_3                            3                             33
D68V10, multiclass
        clus
vv       DEL PEAK 44(21Q22.3) MUTATED DEL PEAK 44(21Q22.3) WILD-TYPE
  CLUS_1                            4                             62
  CLUS_2                            4                             17
  CLUS_3                            3                             57

Clustering(69) Variable = Del Peak 45(22q13.32) mutation analysis
D69V1, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            65                             107
  CLUS_2                            62                             108
  CLUS_3                            68                              99
D69V2, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            88                             129
  CLUS_2                            50                              76
  CLUS_3                            57                             109
D69V3, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            51                              88
  CLUS_2                            75                              82
  CLUS_3                            21                              51
  CLUS_4                            34                              70
D69V4, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            57                             106
  CLUS_2                            80                              99
  CLUS_3                            44                              86
D69V5, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            79                              82
  CLUS_2                            66                             148
  CLUS_3                            63                             125
D69V6, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            14                              24
  CLUS_2                             9                              11
  CLUS_3                             9                              15
  CLUS_4                             8                              19
D69V7, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            19                              35
  CLUS_2                            23                              35
  CLUS_3                            18                              26
  CLUS_4                            16                              29
D69V8, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            23                              41
  CLUS_2                            13                              20
  CLUS_3                            40                              64
D69V9, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            17                              27
  CLUS_2                            26                              41
  CLUS_3                            22                              14
D69V10, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            28                              38
  CLUS_2                            10                              11
  CLUS_3                            27                              33

Clustering(70) Variable = Del Peak 46(Xp22.2) mutation analysis
D70V1, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          27                           145
  CLUS_2                          57                           113
  CLUS_3                          34                           133
D70V2, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          43                           174
  CLUS_2                          24                           102
  CLUS_3                          51                           115
D70V3, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          27                           112
  CLUS_2                          45                           112
  CLUS_3                          18                            54
  CLUS_4                          19                            85
D70V4, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          31                           132
  CLUS_2                          42                           137
  CLUS_3                          36                            94
D70V5, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          65                            96
  CLUS_2                          29                           185
  CLUS_3                          29                           159
D70V6, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                           2                            18
  CLUS_3                           6                            18
  CLUS_4                          11                            16
D70V7, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                           9                            45
  CLUS_2                          12                            46
  CLUS_3                          11                            33
  CLUS_4                          12                            33
D70V8, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          13                            51
  CLUS_2                           4                            29
  CLUS_3                          27                            77
D70V9, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          17                            27
  CLUS_2                          18                            49
  CLUS_3                           9                            27
D70V10, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          18                            48
  CLUS_2                           8                            13
  CLUS_3                          18                            42
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"              "MIR_CNMF" 
                     V4                      V5                      V6 
    "MIR_CHIERARCHICAL"               "CN_CNMF"      "METHLYATION_CNMF" 
                     V7                      V8                      V9 
            "RPPA_CNMF"    "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" 
                    V10 
"MRNASEQ_CHIERARCHICAL" 
> q(save="no")
