GDAC_MergedClusteringPipeline Execution Log 2:35 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2861335/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2902818/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile HNSC-TP
GDAC_mergedClustering1 PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2900593/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
GDAC_mergedClustering1 PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/HNSC-TP/2859801/3.GDAC_selectBestcluster.Finished/HNSC-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2900592/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/HNSC-TP/2859798/3.GDAC_selectBestcluster.Finished/HNSC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2860144/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/HNSC-TP/2860142/3.GDAC_selectBestcluster.Finished/HNSC-TP.bestclus.txt
Execution Times:
Submitted: 02:35:23 09-04-13
Completed:
Elapsed: 07 hrs 13 mins 10 secs

step 1. GDAC_mergedClustering [id: 374803] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2861335/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2902818/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
mergedfile HNSC-TP
PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2900593/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/HNSC-TP/2859801/3.GDAC_selectBestcluster.Finished/HNSC-TP.bestclus.txt
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2900592/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/HNSC-TP/2859798/3.GDAC_selectBestcluster.Finished/HNSC-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/HNSC-TP/2860144/3.GDAC_CNMFselectcluster.Finished/HNSC-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/HNSC-TP/2860142/3.GDAC_selectBestcluster.Finished/HNSC-TP.bestclus.txt
Output Files:
 HNSC-TP.mergedcluster.txt
 HNSC-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:35:23 09-04-13
Completed: 02:36:42 09-04-13
Elapsed: 00 hrs 01 mins 18 secs

step 2. GDAC_mergedReport [id: 374804]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster HNSC-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:35:23 09-04-13
Completed: 09:48:31 09-04-13
Elapsed: 07 hrs 13 mins 08 secs