
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/HNSC-TP/2861318/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/HNSC-TP/2843134/1.GDAC_clinicalDataPicker.Finished/HNSC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=327, in cluster file=352, common to both=321
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 321
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               10               311 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               10               311 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               39               282 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               39               282 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               31               290 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               31               290 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21               300 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21               300 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               28               293 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               28               293 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              106               215 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              106               215 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               308 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               308 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               312 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               312 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               82               239 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               82               239 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               28               293 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               28               293 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               295 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               295 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               302 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               302 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               73               248 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               73               248 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               45               276 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               45               276 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               49               272 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               49               272 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              133               188 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              133               188 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               38               283 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               38               283 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               50               271 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               50               271 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                309 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                309 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                315 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                315 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                305 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                305 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                17                304 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                17                304 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                260 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                260 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                24                297 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                24                297 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                304 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                304 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                52                269 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                52                269 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                309 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                309 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                300 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                300 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                28                293 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                28                293 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                19                302 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                19                302 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                298 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                298 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                52                269 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                52                269 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                301 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                301 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                309 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                309 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                300 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                300 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                65                256 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                65                256 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                69                252 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                69                252 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                312 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                312 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                39                282 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                39                282 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               301 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               301 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               305 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               305 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6               315 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6               315 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10               311 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10               311 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              121               200 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              121               200 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               300 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               300 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               77               244 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               77               244 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               271 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               271 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8               313 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8               313 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               61               260 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               61               260 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               302 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               302 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               300 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               300 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               316 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               316 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                8               313 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                8               313 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               68               253 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               68               253 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                7               314 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                7               314 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               88               233 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               88               233 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               31               290 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               31               290 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                48                273 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                48                273 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                27                294 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                27                294 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                280 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                280 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                60                261 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                60                261 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                309 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                309 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                313 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                313 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                64                257 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                64                257 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                16                305 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                16                305 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                24                297 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                24                297 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                309 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                309 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                26                295 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                26                295 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                45                276 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                45                276 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                315 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                315 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                292 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                292 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                90                231 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                90                231 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                27                294 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                27                294 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                20                301 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                20                301 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                21                300 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                21                300 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                10                311 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                10                311 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                57                264 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                57                264 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                25                296 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                25                296 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                7               314 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                7               314 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "RADIATIONTHERAPY"                      
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "NUMBER.OF.LYMPH.NODES"                 
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 321 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415         1134          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         190          845         1761          186          179          242 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          152          244           NA           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
          NA          113          236          186         2891          275 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
         140          133          557          310          535          422 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
         718          638         1152          427          436         2161 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
         624          192          412          310          142          194 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
         325          166          343          383          522          369 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
         395          240          436          348          810          875 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
         397          279          289          173          377          866 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
         252          493          351          360          352          380 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
          NA          413          274          207          228          143 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
         154          201          159           45          134           97 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
         276          201          188          224           42          177 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
          83          119           NA          114          100           46 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        1465         1207          654           NA         1183          841 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
         896         1028          317          341          128          870 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
          NA         1000         1057          984           NA           NA 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
          NA          814         1461         1377         1006          508 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
         693          900         2562          358         1662         1152 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
         798         1777         1521           NA         1050         1125 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
          NA          514           NA          362          311          345 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
         354          233          379          350          479           NA 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        1435         1190         1440         1244           NA          104 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
          NA          759          889           30          972           NA 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
        1036           NA          796           NA          997         1430 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
          NA          392          907          913          946          908 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
         898          929          216          156          180         1077 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
         910         1471         4115          522         3930         3295 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
        1438          584          546         2732         2663         2326 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
        2567         1969          519          406          540         1736 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
        1478         1007          215         1315         1246          405 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
         743          179           NA           NA           NA           NA 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
          NA           NA           NA           NA           NA         3835 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
          NA           NA           NA         3836         3380           NA 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
          NA           NA           NA           NA         3496         1724 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
          NA         1444         1095          953          797           NA 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        1099           NA           NA           NA           NA           NA 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        4334           NA           NA           NA          316          321 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
         236          828          403          325          250          238 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
          77          152          153          127          105          127 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        1149         1058          516          477          548           NA 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
         575          661          360          299          369          368 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
         324           35           14           13           30           57 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 
          NA            2            5           25           NA           NA 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
          31           55           44           30           30          692 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
         160          122          113 
Variable 1:'AGE':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=116,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=212,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=94,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=71,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "PATHOLOGY.T"                           
 [4] "PATHOLOGY.N"                           
 [5] "PATHOLOGICSPREAD(M)"                   
 [6] "TUMOR.STAGE"                           
 [7] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [8] "NUMBERPACKYEARSSMOKED"                 
 [9] "TOBACCOSMOKINGHISTORYINDICATOR"        
[10] "YEAROFTOBACCOSMOKINGONSET"             
[11] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
  1   2   3   4 
 20  51  45 157 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 321 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=57, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 28  81  65 104 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 28  81  65 104 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 28  81  65 104 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 28  81  65 104 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
107  36  99   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
107  36  99   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
107  36  99   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
107  36  99   5 
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 20  51  45 157 
[1] "table(vv)"
vv
  I  II III  IV 
 20  51  45 157 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 20  51  45 157 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 20  51  45 157 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=71, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=54, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=26, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED     6   4
  1P GAIN WILD-TYPE 190 117
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               10               307 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                4               117 
$`1P GAIN MUTATED`
TCGA-BA-5555 TCGA-CN-4727 TCGA-CR-6482 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-6933 
        6.12         6.38        11.34        76.47        57.07        90.08 
TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7422 TCGA-DQ-5625 
        2.10        35.54        34.09        34.78 

$`1P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       58.06        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.02        25.94         0.07       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.45         4.18        37.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             2.10              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            90.08            210.94 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           34.435            14.040 
[1] "2.1 - 90.1 (34.4)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"1P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      6    4
  1P GAIN WILD-TYPE   84  227
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               6                84
  MALE                 4               227
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED     0   1   3   4
  1P GAIN WILD-TYPE  28  80  62 100
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1               0                28
  T2               1                80
  T3               3                62
  T4               4               100
                   vv
clus                 N0  N1  N2  N3
  1P GAIN MUTATED     3   2   2   0
  1P GAIN WILD-TYPE 104  34  97   5
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0               3               104
  N1               2                34
  N2               2                97
  N3               0                 5
D1V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      0    0
  1P GAIN WILD-TYPE   59    6
                   vv
clus                  I  II III  IV
  1P GAIN MUTATED     0   1   2   5
  1P GAIN WILD-TYPE  20  50  43 152
D1V7, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                 0                20
  II                1                50
  III               2                43
  IV                5               152
D1V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1    9
  1P GAIN WILD-TYPE   75  236
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                1                75
  YES               9               236
D1V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P GAIN MUTATED                                             6
  1P GAIN WILD-TYPE                                          78
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P GAIN MUTATED                                        0              1
  1P GAIN WILD-TYPE                                     57            102
                   vv
clus                LIFELONG NON-SMOKER
  1P GAIN MUTATED                     3
  1P GAIN WILD-TYPE                  63
D1V10, multiclass
                                             clus
vv                                            1P GAIN MUTATED 1P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                57
  CURRENT SMOKER                                            1               102
  LIFELONG NON-SMOKER                                       3                63
D1V11, continuous
D1V12, continuous

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    23  16
  1Q GAIN WILD-TYPE 173 105
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               39               278 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               16               105 
$`1Q GAIN MUTATED`
TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-4227 TCGA-BB-7871 TCGA-BB-8601 
        6.12        14.79         2.07         4.37        14.04        20.52 
TCGA-CN-4727 TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6013 TCGA-CN-6023 TCGA-CR-6482 
        6.38        11.57         9.01         5.06         6.18        11.34 
TCGA-CR-7370 TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 
        3.42        29.82       135.29        17.16       108.33        89.82 
TCGA-CV-5442 TCGA-CV-5979 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6951 
       76.47        43.23        90.08         9.70         5.46        30.05 
TCGA-CV-6962 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7407 
        4.14        71.21        31.33        95.34         2.10        35.54 
TCGA-CV-7409 TCGA-CV-7422 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6827 TCGA-DQ-5625 
       17.82        34.09        16.60         7.76         4.18        34.78 
TCGA-DQ-5629 TCGA-HD-7754 TCGA-HL-7533 
       16.96         0.82        22.75 

$`1Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         9.04         4.60        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 
       17.59        13.87        23.61        20.98        37.87        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
       71.05         6.31        13.55        10.19         4.67        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        13.58 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       47.18        39.12        47.34        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 
        5.13         5.92        35.41        29.92        48.36       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 
       47.28        19.20        17.95        87.55        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
        7.07        40.96        13.32        24.43         5.88         2.14 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        15.06         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       26.20        18.97        17.10         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        58.06       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 
        0.46        22.85        25.02        25.94         0.07       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.39        10.55        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 
        7.82         2.53         5.00         5.03         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       37.78        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 
        1.02         1.81         1.45         0.99         0.99         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.82              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           135.29            210.94 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           16.600            13.755 
[1] "0.8 - 135.3 (16.6)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     12   27
  1Q GAIN WILD-TYPE   78  204
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              12                78
  MALE                27               204
                   vv
clus                T1 T2 T3 T4
  1Q GAIN MUTATED    1  6  7 18
  1Q GAIN WILD-TYPE 27 75 58 86
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1               1                27
  T2               6                75
  T3               7                58
  T4              18                86
                   vv
clus                 N0  N1  N2  N3
  1Q GAIN MUTATED     5   5  18   1
  1Q GAIN WILD-TYPE 102  31  81   4
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0               5               102
  N1               5                31
  N2              18                81
  N3               1                 4
D2V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      4    1
  1Q GAIN WILD-TYPE   55    5
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0               4                55
  MX               1                 5
                   vv
clus                  I  II III  IV
  1Q GAIN MUTATED     1   2   4  25
  1Q GAIN WILD-TYPE  19  49  41 132
D2V7, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                 1                19
  II                2                49
  III               4                41
  IV               25               132
D2V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     13   26
  1Q GAIN WILD-TYPE   63  219
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               13                63
  YES              26               219
D2V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1Q GAIN MUTATED                                            15
  1Q GAIN WILD-TYPE                                          69
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1Q GAIN MUTATED                                        7             10
  1Q GAIN WILD-TYPE                                     50             93
                   vv
clus                LIFELONG NON-SMOKER
  1Q GAIN MUTATED                     6
  1Q GAIN WILD-TYPE                  60
D2V10, multiclass
                                             clus
vv                                            1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15                69
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    7                50
  CURRENT SMOKER                                           10                93
  LIFELONG NON-SMOKER                                       6                60
D2V11, continuous
D2V12, continuous

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    18  13
  2P GAIN WILD-TYPE 178 108
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               31               286 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13               108 
$`2P GAIN MUTATED`
TCGA-BA-4075 TCGA-CN-4727 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 
        9.30         6.38         6.18         1.38         5.82        27.65 
TCGA-CR-5247 TCGA-CR-7383 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 
       11.77        17.13         5.13         5.92       135.29        89.82 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7178 
       90.08        26.43        11.24        15.06         4.14        71.21 
TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7421 
       56.68        31.33        95.34        47.97        36.13         0.07 
TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 TCGA-DQ-7589 
      100.54        16.60         7.76        10.68        16.96        18.90 
TCGA-DQ-7592 
        9.83 

$`2P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        7.36         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        29.92        48.36        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       21.86       126.08        19.79        12.03        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       12.89        21.76        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        18.97        17.10         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        2.10        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       21.99        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        4.18        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73        11.84        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.07              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           135.29            210.94 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           16.600            13.955 
[1] "0.1 - 135.3 (16.6)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"2P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      6   25
  2P GAIN WILD-TYPE   84  206
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE               6                84
  MALE                25               206
                   vv
clus                T1 T2 T3 T4
  2P GAIN MUTATED    2  8  8  9
  2P GAIN WILD-TYPE 26 73 57 95
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               2                26
  T2               8                73
  T3               8                57
  T4               9                95
                   vv
clus                N0 N1 N2 N3
  2P GAIN MUTATED   11  4  8  0
  2P GAIN WILD-TYPE 96 32 91  5
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              11                96
  N1               4                32
  N2               8                91
  N3               0                 5
D3V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      4    0
  2P GAIN WILD-TYPE   55    6
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0               4                55
  MX               0                 6
                   vv
clus                  I  II III  IV
  2P GAIN MUTATED     2   6   6  13
  2P GAIN WILD-TYPE  18  45  39 144
D3V7, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                 2                18
  II                6                45
  III               6                39
  IV               13               144
D3V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      7   24
  2P GAIN WILD-TYPE   69  221
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                7                69
  YES              24               221
D3V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2P GAIN MUTATED                                             8
  2P GAIN WILD-TYPE                                          76
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2P GAIN MUTATED                                        8             11
  2P GAIN WILD-TYPE                                     49             92
                   vv
clus                LIFELONG NON-SMOKER
  2P GAIN MUTATED                     2
  2P GAIN WILD-TYPE                  64
D3V10, multiclass
                                             clus
vv                                            2P GAIN MUTATED 2P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               8                76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                49
  CURRENT SMOKER                                           11                92
  LIFELONG NON-SMOKER                                       2                64
D3V11, continuous
D3V12, continuous

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    10  11
  2Q GAIN WILD-TYPE 186 110
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21               296 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               11               110 
$`2Q GAIN MUTATED`
TCGA-BA-4075 TCGA-CN-4727 TCGA-CQ-5329 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-7383 
        9.30         6.38        27.65        14.96        11.77        17.13 
TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6962 
      135.29       108.33        89.82        26.43        15.06         4.14 
TCGA-CV-7235 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7421 TCGA-CV-7423 
       56.68        95.34        47.97        36.13         0.07       100.54 
TCGA-CX-7086 TCGA-DQ-5629 TCGA-DQ-7592 
        7.76        16.96         9.83 

$`2Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35        13.25         4.21        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       33.07        16.70        22.78        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       48.36        17.16       129.21        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        12.03        42.35        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       21.76        71.21        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 
       36.00        31.33        26.20        18.97        17.10         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87         2.10        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
       16.60         6.38        21.99        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.07              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           135.29            210.94 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            17.13             13.61 
[1] "0.1 - 135.3 (17.1)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      4   17
  2Q GAIN WILD-TYPE   86  214
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               4                86
  MALE                17               214
                   vv
clus                T1 T2 T3 T4
  2Q GAIN MUTATED    2  5  3  8
  2Q GAIN WILD-TYPE 26 76 62 96
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               2                26
  T2               5                76
  T3               3                62
  T4               8                96
                   vv
clus                N0 N1 N2 N3
  2Q GAIN MUTATED    8  2  5  0
  2Q GAIN WILD-TYPE 99 34 94  5
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0               8                99
  N1               2                34
  N2               5                94
  N3               0                 5
D4V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2    0
  2Q GAIN WILD-TYPE   57    6
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0               2                57
  MX               0                 6
                   vv
clus                  I  II III  IV
  2Q GAIN MUTATED     1   4   3  10
  2Q GAIN WILD-TYPE  19  47  42 147
D4V7, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                 1                19
  II                4                47
  III               3                42
  IV               10               147
D4V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      6   15
  2Q GAIN WILD-TYPE   70  230
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                6                70
  YES              15               230
D4V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q GAIN MUTATED                                             4
  2Q GAIN WILD-TYPE                                          80
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q GAIN MUTATED                                        7              8
  2Q GAIN WILD-TYPE                                     50             95
                   vv
clus                LIFELONG NON-SMOKER
  2Q GAIN MUTATED                     1
  2Q GAIN WILD-TYPE                  65
D4V10, multiclass
                                             clus
vv                                            2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    7                50
  CURRENT SMOKER                                            8                95
  LIFELONG NON-SMOKER                                       1                65
D4V11, continuous
D4V12, continuous

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    19   9
  3P GAIN WILD-TYPE 177 112
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               28               289 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               112 
$`3P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 
        9.30        37.28        57.90        57.44        95.05         4.60 
TCGA-CN-4723 TCGA-CN-4731 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6021 TCGA-CN-6023 
       13.55        12.59         6.81         5.06         9.07         6.18 
TCGA-CN-6988 TCGA-CQ-5323 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-6467 TCGA-CR-6470 
        1.38        48.16        34.75        13.25        58.42        50.01 
TCGA-CR-6474 TCGA-CR-6487 TCGA-CR-7368 TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-6433 
       18.51         7.66        40.90        76.47        33.11        13.32 
TCGA-CV-7178 TCGA-CV-7409 TCGA-CV-7437 TCGA-HD-8314 
       71.21        17.82        16.60         1.45 

$`3P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16        13.64         9.07         8.15         6.25        27.78 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
        6.12         5.88         7.96        53.75         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        9.04         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       23.61        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       20.52         6.31        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
        5.46        11.28        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        4.41         3.19         6.61         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 
        3.91         3.68         3.75         3.29         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       54.64        37.87        26.24        39.52        34.52        36.99 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 
       57.07        48.59         7.07        43.23        40.96        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       58.06        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.45         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.81         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             1.38              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            95.05            210.94 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            17.21             14.04 
[1] "1.4 - 95.0 (17.2)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"3P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      5   23
  3P GAIN WILD-TYPE   85  208
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               5                85
  MALE                23               208
                   vv
clus                T1 T2 T3 T4
  3P GAIN MUTATED    2  8  4 10
  3P GAIN WILD-TYPE 26 73 61 94
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               2                26
  T2               8                73
  T3               4                61
  T4              10                94
                   vv
clus                N0 N1 N2 N3
  3P GAIN MUTATED    9  2 10  1
  3P GAIN WILD-TYPE 98 34 89  4
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0               9                98
  N1               2                34
  N2              10                89
  N3               1                 4
D5V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      8    0
  3P GAIN WILD-TYPE   51    6
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0               8                51
  MX               0                 6
                   vv
clus                  I  II III  IV
  3P GAIN MUTATED     2   4   3  14
  3P GAIN WILD-TYPE  18  47  42 143
D5V7, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                 2                18
  II                4                47
  III               3                42
  IV               14               143
D5V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      8   20
  3P GAIN WILD-TYPE   68  225
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                8                68
  YES              20               225
D5V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P GAIN MUTATED                                            11
  3P GAIN WILD-TYPE                                          73
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P GAIN MUTATED                                        5              4
  3P GAIN WILD-TYPE                                     52             99
                   vv
clus                LIFELONG NON-SMOKER
  3P GAIN MUTATED                     8
  3P GAIN WILD-TYPE                  58
D5V10, multiclass
                                             clus
vv                                            3P GAIN MUTATED 3P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              11                73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                52
  CURRENT SMOKER                                            4                99
  LIFELONG NON-SMOKER                                       8                58
D5V11, continuous
D5V12, continuous

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    68  38
  3Q GAIN WILD-TYPE 128  83
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              106               211 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               38                83 
$`3Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        37.28         9.07         8.15         6.25        57.90 
TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 
        7.96        57.44         5.00        14.79        12.99         7.76 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-7864 TCGA-BB-7872 TCGA-BB-8596 
       95.05         4.60         4.37        23.61        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       20.52        13.55         4.67        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5359 
       12.59         7.89        11.44        28.77         9.50        12.39 
TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 
       28.47        11.57        13.58         9.01         6.81         4.70 
TCGA-CN-6013 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
        5.06         4.41         3.19         9.07         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5329 TCGA-CQ-6220 
        5.82         3.91         1.51        48.16        27.65        32.35 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-6467 
       34.75        13.25        14.96        84.23        37.87        58.42 
TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6487 TCGA-CR-7365 TCGA-CR-7368 
       50.01        18.51        11.90         7.66        39.12        40.90 
TCGA-CR-7369 TCGA-CR-7385 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5436 
       35.84        32.78        29.92        48.36       135.29        19.20 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 
       89.82        76.47        64.73        57.07        33.11        40.96 
TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6951 
       13.32        90.08         9.70        26.43        42.35        30.05 
TCGA-CV-6954 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7243 
       65.82         5.23         1.84        52.31        71.21        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7261 
       26.20        18.97        17.10        95.34        11.87        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7424 
       18.41        58.06        17.82         0.46         0.07        14.86 
TCGA-CV-7434 TCGA-CV-7437 TCGA-DQ-5624 TCGA-DQ-7592 TCGA-DQ-7595 TCGA-HD-7754 
        7.13        16.60        37.78         9.83        10.65         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        1.02         1.81         1.45        22.75 

$`3Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 
       15.16        13.64        27.78         6.12         5.88        53.75 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4228 
        8.02         2.07         3.72         6.12         9.04        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        17.59        13.87        20.98        37.87        14.04 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        6.31        10.19         6.38        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 
       14.33        26.63        13.05         9.17         5.69         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-6011 
       16.21        11.54        11.84        12.49         8.52         7.50 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6992 
        6.61         5.23         1.48         6.61         7.36         2.73 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.68         3.75         3.29        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 
       28.60        32.88        32.35         4.21        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 
       45.27        33.07        16.70        22.78        29.59        11.77 
TCGA-CR-5248 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 
       54.64        26.24        39.52        34.52        36.99        16.90 
TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
        6.02        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7371 
       15.75         9.27        47.18        47.34         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
        5.13         5.92        35.41        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 
       47.28        17.95        87.55        84.39        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 
       17.75        48.59         7.07        43.23        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        2.14         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        12.03        15.06         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
        9.01        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 
        4.73        47.47        36.00         4.96        47.97         2.10 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       35.54       210.94        89.33         9.67        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 
        3.48        16.27        84.49        19.73       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.45         4.18        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       18.02        14.04        18.90        21.73        11.84        12.13 
TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       12.10         1.15         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-7631 
        0.07         0.16         0.99         0.99         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.07              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           135.29            210.94 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           14.825            13.870 
[1] "0.1 - 135.3 (14.8)" "0.1 - 210.9 (13.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"3Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     22   84
  3Q GAIN WILD-TYPE   68  147
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              22                68
  MALE                84               147
                   vv
clus                T1 T2 T3 T4
  3Q GAIN MUTATED    7 25 21 37
  3Q GAIN WILD-TYPE 21 56 44 67
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1               7                21
  T2              25                56
  T3              21                44
  T4              37                67
                   vv
clus                N0 N1 N2 N3
  3Q GAIN MUTATED   31 14 36  2
  3Q GAIN WILD-TYPE 76 22 63  3
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              31                76
  N1              14                22
  N2              36                63
  N3               2                 3
D6V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     18    2
  3Q GAIN WILD-TYPE   41    4
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0              18                41
  MX               2                 4
                   vv
clus                 I II III IV
  3Q GAIN MUTATED    4 10  16 58
  3Q GAIN WILD-TYPE 16 41  29 99
D6V7, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                 4                16
  II               10                41
  III              16                29
  IV               58                99
D6V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     36   70
  3Q GAIN WILD-TYPE   40  175
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               36                40
  YES              70               175
D6V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q GAIN MUTATED                                            30
  3Q GAIN WILD-TYPE                                          54
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q GAIN MUTATED                                       17             32
  3Q GAIN WILD-TYPE                                     40             71
                   vv
clus                LIFELONG NON-SMOKER
  3Q GAIN MUTATED                    23
  3Q GAIN WILD-TYPE                  43
D6V10, multiclass
                                             clus
vv                                            3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              30                54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   17                40
  CURRENT SMOKER                                           32                71
  LIFELONG NON-SMOKER                                      23                43
D6V11, continuous
D6V12, continuous

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     9   4
  4P GAIN WILD-TYPE 187 117
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               304 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               117 
$`4P GAIN MUTATED`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4737 TCGA-CQ-6224 TCGA-CV-5973 
       12.99         4.60         6.38         7.89        32.35        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6954 TCGA-CV-7102 TCGA-CV-7255 TCGA-DQ-5625 
       48.59        33.11        65.82         1.84         2.10        34.78 
TCGA-DQ-7592 
        9.83 

$`4P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
        4.21        28.60        32.35        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5978 
       84.39        64.73        17.06        13.35        17.75         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73        11.84        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             1.84              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            65.82            210.94 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           12.990            14.185 
[1] "1.8 - 65.8 (13.0)"  "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      4    9
  4P GAIN WILD-TYPE   86  222
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               4                86
  MALE                 9               222
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     0   2   3   4
  4P GAIN WILD-TYPE  28  79  62 100
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               0                28
  T2               2                79
  T3               3                62
  T4               4               100
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED     3   0   5   0
  4P GAIN WILD-TYPE 104  36  94   5
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0               3               104
  N1               0                36
  N2               5                94
  N3               0                 5
D7V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0    0
  4P GAIN WILD-TYPE   59    6
                   vv
clus                  I  II III  IV
  4P GAIN MUTATED     0   0   1   8
  4P GAIN WILD-TYPE  20  51  44 149
D7V7, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                 0                20
  II                0                51
  III               1                44
  IV                8               149
D7V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      5    8
  4P GAIN WILD-TYPE   71  237
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                5                71
  YES               8               237
D7V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P GAIN MUTATED                                             5
  4P GAIN WILD-TYPE                                          79
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P GAIN MUTATED                                        2              3
  4P GAIN WILD-TYPE                                     55            100
                   vv
clus                LIFELONG NON-SMOKER
  4P GAIN MUTATED                     3
  4P GAIN WILD-TYPE                  63
D7V10, multiclass
                                             clus
vv                                            4P GAIN MUTATED 4P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                55
  CURRENT SMOKER                                            3               100
  LIFELONG NON-SMOKER                                       3                63
D7V11, continuous
D7V12, continuous

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     5   4
  4Q GAIN WILD-TYPE 191 117
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               308 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               117 
$`4Q GAIN MUTATED`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-7102 
       12.99         4.60         6.38        19.20        33.11         1.84 
TCGA-CV-7245 TCGA-CV-7415 TCGA-DQ-5625 
       26.20        22.85        34.78 

$`4Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        47.28        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        48.59         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.45         4.18        37.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             1.84              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            34.78            210.94 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            19.20             14.04 
[1] "1.8 - 34.8 (19.2)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2    7
  4Q GAIN WILD-TYPE   88  224
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               2                88
  MALE                 7               224
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     0   0   3   3
  4Q GAIN WILD-TYPE  28  81  62 101
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               0                28
  T2               0                81
  T3               3                62
  T4               3               101
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED     2   0   4   0
  4Q GAIN WILD-TYPE 105  36  95   5
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               2               105
  N1               0                36
  N2               4                95
  N3               0                 5
D8V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    0
  4Q GAIN WILD-TYPE   59    6
                   vv
clus                  I  II III  IV
  4Q GAIN MUTATED     0   0   0   6
  4Q GAIN WILD-TYPE  20  51  45 151
D8V7, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 0                20
  II                0                51
  III               0                45
  IV                6               151
D8V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2    7
  4Q GAIN WILD-TYPE   74  238
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                2                74
  YES               7               238
D8V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q GAIN MUTATED                                             4
  4Q GAIN WILD-TYPE                                          80
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q GAIN MUTATED                                        1              3
  4Q GAIN WILD-TYPE                                     56            100
                   vv
clus                LIFELONG NON-SMOKER
  4Q GAIN MUTATED                     0
  4Q GAIN WILD-TYPE                  66
D8V10, multiclass
                                             clus
vv                                            4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                56
  CURRENT SMOKER                                            3               100
  LIFELONG NON-SMOKER                                       0                66
D8V11, continuous
D8V12, continuous

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    51  28
  5P GAIN WILD-TYPE 145  93
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               79               238 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               28                93 
$`5P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
        9.30         6.12        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-4228 
       14.79         3.72         7.76        95.05         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7864 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4727 
       10.19        23.61        71.05        20.52        13.55         6.38 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
        5.46        11.28        12.59        12.99        14.33        11.44 
TCGA-CN-5366 TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6997 
       11.84         7.50         6.18         1.38         3.91         3.29 
TCGA-CQ-5330 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-6467 
       29.46        32.88        32.35        16.70        84.23        58.42 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7398 TCGA-CR-7399 
       39.52        36.99        12.89        31.10         5.13         5.92 
TCGA-CR-7404 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5970 TCGA-CV-6441 
       48.36        47.28        17.95        76.47        13.35         5.88 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 
        5.46        20.52        11.24        65.82         7.13         8.38 
TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        2.50       111.12        18.81         1.84        52.31        12.89 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7421 
       71.21        10.75        26.20        17.82        25.02         0.07 
TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-8568 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
       16.60         7.76         3.45        16.96        15.68        18.02 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 
       21.73         9.83         0.16         1.02         1.81         0.99 
TCGA-IQ-7630 
        5.26 

$`5P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6871 TCGA-BA-6872 
       27.78        57.90         5.88         7.96         2.07        12.99 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        6.12         9.04         4.60        17.59        13.87        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       37.87        14.04        14.33         6.31        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4741 
       10.68        17.16        12.13         7.89        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       13.58         9.01         6.81         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
        7.36         5.82         2.73         3.68         3.75         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 
       45.27        33.07        22.78        29.59        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 
       37.87        26.24        50.01        34.52        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        29.82        30.02 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 
       29.85        29.52        30.54         7.10        35.41        29.92 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 
      135.29        17.16       129.21       108.33        19.20        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 
       87.55        84.39        64.73        17.06        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 
       24.43        90.08         2.14         9.70         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       26.43       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 
       30.05         6.08        53.92        10.98        28.31         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.80       126.12        12.66         7.99         9.01         5.23 
TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       21.76       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.39        10.55        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7589 
        4.18         4.18        37.78        34.78        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
       11.84        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8314 
        0.43         0.99         1.87         0.07         0.82         1.45 
TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         4.01         3.72 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           111.12            210.94 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            12.89             15.01 
[1] "0.1 - 111.1 (12.9)" "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"5P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     17   65
  5P GAIN WILD-TYPE   73  166
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              17                73
  MALE                65               166
                   vv
clus                T1 T2 T3 T4
  5P GAIN MUTATED    6 19 18 26
  5P GAIN WILD-TYPE 22 62 47 78
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1               6                22
  T2              19                62
  T3              18                47
  T4              26                78
                   vv
clus                N0 N1 N2 N3
  5P GAIN MUTATED   23 10 26  1
  5P GAIN WILD-TYPE 84 26 73  4
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              23                84
  N1              10                26
  N2              26                73
  N3               1                 4
D9V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     10    4
  5P GAIN WILD-TYPE   49    2
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              10                49
  MX               4                 2
                   vv
clus                  I  II III  IV
  5P GAIN MUTATED     3   9  14  41
  5P GAIN WILD-TYPE  17  42  31 116
D9V7, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                 3                17
  II                9                42
  III              14                31
  IV               41               116
D9V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     22   60
  5P GAIN WILD-TYPE   54  185
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               22                54
  YES              60               185
D9V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P GAIN MUTATED                                            26
  5P GAIN WILD-TYPE                                          58
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P GAIN MUTATED                                       15             26
  5P GAIN WILD-TYPE                                     42             77
                   vv
clus                LIFELONG NON-SMOKER
  5P GAIN MUTATED                    13
  5P GAIN WILD-TYPE                  53
D9V10, multiclass
                                             clus
vv                                            5P GAIN MUTATED 5P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              26                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   15                42
  CURRENT SMOKER                                           26                77
  LIFELONG NON-SMOKER                                      13                53
D9V11, continuous
D9V12, continuous

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    17   9
  5Q GAIN WILD-TYPE 179 112
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               26               291 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                9               112 
$`5Q GAIN MUTATED`
TCGA-BA-6869 TCGA-BA-6870 TCGA-BB-4223 TCGA-BB-7861 TCGA-BB-7864 TCGA-CN-4738 
        8.02        14.79        95.05        10.19        23.61        14.33 
TCGA-CN-6011 TCGA-CN-6023 TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-6471 
        7.50         6.18        32.35        16.70        84.23        39.52 
TCGA-CR-6473 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-6936 TCGA-CV-6954 TCGA-CV-6956 
       36.99        12.89        76.47         5.46        65.82         7.13 
TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7416 TCGA-DQ-5629 TCGA-DQ-5630 
        1.84        71.21        26.20        25.02        16.96        15.68 
TCGA-DQ-7590 TCGA-HD-8635 
       21.73         0.99 

$`5Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         5.00         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12         9.04         4.60         4.37        18.31 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       17.59        13.87        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99         7.89        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 
       45.27        33.07        22.78        29.59        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6474 
       37.87        26.24        58.42        50.01        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        9.70        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
        6.08        53.92        10.98         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        4.18        37.78        34.78        18.02        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 
        0.82         1.02         1.81         1.45         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.99              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            95.05            210.94 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            16.83             13.58 
[1] "1.0 - 95.0 (16.8)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      7   21
  5Q GAIN WILD-TYPE   83  210
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               7                83
  MALE                21               210
                   vv
clus                T1 T2 T3 T4
  5Q GAIN MUTATED    3  4  4 10
  5Q GAIN WILD-TYPE 25 77 61 94
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               3                25
  T2               4                77
  T3               4                61
  T4              10                94
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED     6   4   9   0
  5Q GAIN WILD-TYPE 101  32  90   5
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0               6               101
  N1               4                32
  N2               9                90
  N3               0                 5
D10V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      3    1
  5Q GAIN WILD-TYPE   56    5
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0               3                56
  MX               1                 5
                   vv
clus                  I  II III  IV
  5Q GAIN MUTATED     1   0   4  16
  5Q GAIN WILD-TYPE  19  51  41 141
D10V7, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                 1                19
  II                0                51
  III               4                41
  IV               16               141
D10V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      9   19
  5Q GAIN WILD-TYPE   67  226
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                9                67
  YES              19               226
D10V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q GAIN MUTATED                                             7
  5Q GAIN WILD-TYPE                                          77
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q GAIN MUTATED                                        6             10
  5Q GAIN WILD-TYPE                                     51             93
                   vv
clus                LIFELONG NON-SMOKER
  5Q GAIN MUTATED                     4
  5Q GAIN WILD-TYPE                  62
D10V10, multiclass
                                             clus
vv                                            5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    6                51
  CURRENT SMOKER                                           10                93
  LIFELONG NON-SMOKER                                       4                62
D10V11, continuous
D10V12, continuous

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    17   9
  6P GAIN WILD-TYPE 179 112
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               291 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                9               112 
$`6P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BB-4224 TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 
        9.30         6.12         9.04        13.55         9.50         8.28 
TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-7368 
        5.82        27.65         4.21        16.70        11.77        40.90 
TCGA-CR-7389 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-6003 TCGA-CV-6933 
       12.89        29.92       135.29        76.47        40.96        90.08 
TCGA-CV-6954 TCGA-CV-6959 TCGA-CV-7243 TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7415 
       65.82         8.38        31.33         2.10        35.54        22.85 
TCGA-DQ-5625 TCGA-HD-7917 
       34.78         1.02 

$`6P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12        95.05         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4725 
       14.04        14.33        71.05        20.52         6.31        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       26.63        28.77        13.05         9.17         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         1.38         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       45.27        33.07        22.78        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.13         5.92        35.41        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       57.07        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
       47.97        36.13        18.41        58.06        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 
        5.00         5.03         4.18         3.45         4.18        37.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        0.82         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             1.02              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           135.29            210.94 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           15.125            14.040 
[1] "1.0 - 135.3 (15.1)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"6P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      7   19
  6P GAIN WILD-TYPE   83  212
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               7                83
  MALE                19               212
                   vv
clus                T1 T2 T3 T4
  6P GAIN MUTATED    1  6  7  8
  6P GAIN WILD-TYPE 27 75 58 96
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1               1                27
  T2               6                75
  T3               7                58
  T4               8                96
                   vv
clus                N0 N1 N2 N3
  6P GAIN MUTATED    8  4  7  1
  6P GAIN WILD-TYPE 99 32 92  4
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0               8                99
  N1               4                32
  N2               7                92
  N3               1                 4
D11V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      3    0
  6P GAIN WILD-TYPE   56    6
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0               3                56
  MX               0                 6
                   vv
clus                  I  II III  IV
  6P GAIN MUTATED     1   3   6  12
  6P GAIN WILD-TYPE  19  48  39 145
D11V7, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                 1                19
  II                3                48
  III               6                39
  IV               12               145
D11V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   24
  6P GAIN WILD-TYPE   74  221
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                74
  YES              24               221
D11V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P GAIN MUTATED                                             5
  6P GAIN WILD-TYPE                                          79
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P GAIN MUTATED                                        3              9
  6P GAIN WILD-TYPE                                     54             94
                   vv
clus                LIFELONG NON-SMOKER
  6P GAIN MUTATED                     6
  6P GAIN WILD-TYPE                  60
D11V10, multiclass
                                             clus
vv                                            6P GAIN MUTATED 6P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                54
  CURRENT SMOKER                                            9                94
  LIFELONG NON-SMOKER                                       6                60
D11V11, continuous
D11V12, continuous

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    10   9
  6Q GAIN WILD-TYPE 186 112
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               298 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                9               112 
$`6Q GAIN MUTATED`
TCGA-BA-4075 TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 TCGA-CQ-5334 TCGA-CQ-7067 
        9.30        13.55         9.50         8.28         4.21        16.70 
TCGA-CR-5247 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6933 
       11.77       135.29        76.47        57.07        40.96        90.08 
TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7255 TCGA-CV-7415 TCGA-CV-7434 TCGA-DQ-5625 
        8.38         4.14         2.10        22.85         7.13        34.78 
TCGA-HD-7917 
        1.02 

$`6Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39        28.47        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       17.75        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       65.82        10.98         7.13        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       11.87        47.97        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.82       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             1.02              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           135.29            210.94 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            11.77             14.33 
[1] "1.0 - 135.3 (11.8)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      6   13
  6Q GAIN WILD-TYPE   84  218
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               6                84
  MALE                13               218
                   vv
clus                T1 T2 T3 T4
  6Q GAIN MUTATED    1  2  6  8
  6Q GAIN WILD-TYPE 27 79 59 96
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               1                27
  T2               2                79
  T3               6                59
  T4               8                96
                   vv
clus                N0 N1 N2 N3
  6Q GAIN MUTATED    8  3  4  1
  6Q GAIN WILD-TYPE 99 33 95  4
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0               8                99
  N1               3                33
  N2               4                95
  N3               1                 4
D12V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      2    0
  6Q GAIN WILD-TYPE   57    6
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0               2                57
  MX               0                 6
                   vv
clus                  I  II III  IV
  6Q GAIN MUTATED     1   1   6   9
  6Q GAIN WILD-TYPE  19  50  39 148
D12V7, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 1                19
  II                1                50
  III               6                39
  IV                9               148
D12V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      1   18
  6Q GAIN WILD-TYPE   75  227
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                1                75
  YES              18               227
D12V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q GAIN MUTATED                                             5
  6Q GAIN WILD-TYPE                                          79
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q GAIN MUTATED                                        2              6
  6Q GAIN WILD-TYPE                                     55             97
                   vv
clus                LIFELONG NON-SMOKER
  6Q GAIN MUTATED                     4
  6Q GAIN WILD-TYPE                  62
D12V10, multiclass
                                             clus
vv                                            6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                55
  CURRENT SMOKER                                            6                97
  LIFELONG NON-SMOKER                                       4                62
D12V11, continuous
D12V12, continuous

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    46  27
  7P GAIN WILD-TYPE 150  94
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               73               244 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               27                94 
$`7P GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-BB-7863 
       15.16         9.30        13.64         8.15         6.12        13.87 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4730 TCGA-CN-4737 TCGA-CN-6011 TCGA-CN-6012 
       20.52         6.31        11.28         7.89         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 
        5.06         6.18         7.36         1.38         5.82        27.65 
TCGA-CQ-6225 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-7364 
       13.25        16.70        22.78        18.51        16.90        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7390 TCGA-CR-7398 
       39.12        47.34        19.92        26.17        29.82         5.13 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
       17.16       129.21       108.33        89.82        76.47        64.73 
TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 
       90.08         5.46        15.06        30.05        53.92        65.82 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 
        4.14       126.12         5.23        21.76        71.21        56.68 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7409 
       31.33        18.97        47.97         2.10        36.13        17.82 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 
       25.02       100.54        14.86        16.60        21.99         7.76 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 
       27.22        10.68         4.18        34.78        16.96        18.90 
TCGA-F7-8298 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8634 TCGA-IQ-7631 
        0.46         0.07         0.16         1.02         0.99         4.01 
TCGA-IQ-7632 
        3.72 

$`7P GAIN WILD-TYPE`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       37.28         9.07         6.25        27.78        57.90         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
        7.96        53.75        57.44         5.00         8.02        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 
        2.07        12.99         3.72         7.76         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       23.61        20.98        37.87        14.04        14.33        71.05 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        6.61         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5243 
       26.76        48.03        45.27        33.07        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       39.52        34.52        36.99         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
        9.27        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7383 TCGA-CR-7385 
       29.23         0.99        31.96        34.06        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
       48.36       135.29        47.28        19.20        17.95        87.55 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        5.88         2.14         9.70        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
        6.08        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
        1.84        52.31        12.89        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       11.87        18.41        58.06        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 
       19.73         7.13       142.49         6.38        10.39        10.55 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.45         4.18        37.78        15.68        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 TCGA-HD-8224 
        1.15         0.43         0.99         1.87         0.82         1.81 
TCGA-HD-8314 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.45         0.99        22.75         5.26 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           129.21            210.94 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           16.900            13.285 
[1] "0.1 - 129.2 (16.9)" "0.1 - 210.9 (13.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IQ-7632 
  "7P GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IQ-7632 
  "7P GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IQ-7632 
  "7P GAIN MUTATED" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     18   55
  7P GAIN WILD-TYPE   72  176
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              18                72
  MALE                55               176
                   vv
clus                T1 T2 T3 T4
  7P GAIN MUTATED    6 19 18 25
  7P GAIN WILD-TYPE 22 62 47 79
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1               6                22
  T2              19                62
  T3              18                47
  T4              25                79
                   vv
clus                N0 N1 N2 N3
  7P GAIN MUTATED   28  7 22  1
  7P GAIN WILD-TYPE 79 29 77  4
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              28                79
  N1               7                29
  N2              22                77
  N3               1                 4
D13V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     10    2
  7P GAIN WILD-TYPE   49    4
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              10                49
  MX               2                 4
                   vv
clus                  I  II III  IV
  7P GAIN MUTATED     6  14  11  37
  7P GAIN WILD-TYPE  14  37  34 120
D13V7, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                 6                14
  II               14                37
  III              11                34
  IV               37               120
D13V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     17   56
  7P GAIN WILD-TYPE   59  189
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               17                59
  YES              56               189
D13V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P GAIN MUTATED                                            17
  7P GAIN WILD-TYPE                                          67
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P GAIN MUTATED                                       12             26
  7P GAIN WILD-TYPE                                     45             77
                   vv
clus                LIFELONG NON-SMOKER
  7P GAIN MUTATED                    14
  7P GAIN WILD-TYPE                  52
D13V10, multiclass
                                             clus
vv                                            7P GAIN MUTATED 7P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              17                67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   12                45
  CURRENT SMOKER                                           26                77
  LIFELONG NON-SMOKER                                      14                52
D13V11, continuous
D13V12, continuous

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    29  16
  7Q GAIN WILD-TYPE 167 105
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               45               272 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               16               105 
$`7Q GAIN MUTATED`
TCGA-BB-7863 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-5360 TCGA-CN-6012 
       13.87        20.52         6.31         6.38        28.47         4.70 
TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-6225 
        5.06         6.18         7.36         1.38         5.82        13.25 
TCGA-CQ-7067 TCGA-CR-7390 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       16.70        29.82        17.16       129.21       108.33        89.82 
TCGA-CV-5442 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 
       76.47        90.08        11.24        15.06        30.05         4.14 
TCGA-CV-7090 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7247 
      126.12         5.23        21.76        71.21        56.68        18.97 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7416 TCGA-CV-7424 TCGA-CV-7437 TCGA-CX-7086 
       47.97        36.13        25.02        14.86        16.60         7.76 
TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-8298 
       10.68         4.18        34.78        16.96        18.90         0.46 
TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-7631 
        0.16         1.02         4.01 

$`7Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
        4.60         4.37        18.31        10.19        17.59        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4723 
       20.98        37.87        14.04        14.33        71.05        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        6.61         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
       28.60        32.35        32.88        34.75        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 
       14.96        26.76        48.03        45.27        33.07        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 
       47.28        19.20        17.95        87.55        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 
       26.43       126.08        19.79        12.03        42.35         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 
        9.01         1.84        52.31        12.89        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        11.87         2.10        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       22.85        25.94         0.07        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        7.13       142.49         6.38        21.99        10.39        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03         3.45         4.18        37.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
       10.65         1.15         0.43         0.99         1.87         0.07 
TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        0.82         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7632 
        5.26         3.72 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.16              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           129.21            210.94 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            16.60             13.61 
[1] "0.2 - 129.2 (16.6)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     10   35
  7Q GAIN WILD-TYPE   80  196
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              10                80
  MALE                35               196
                   vv
clus                T1 T2 T3 T4
  7Q GAIN MUTATED    5  9 14 14
  7Q GAIN WILD-TYPE 23 72 51 90
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1               5                23
  T2               9                72
  T3              14                51
  T4              14                90
                   vv
clus                N0 N1 N2 N3
  7Q GAIN MUTATED   18  3 14  0
  7Q GAIN WILD-TYPE 89 33 85  5
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              18                89
  N1               3                33
  N2              14                85
  N3               0                 5
D14V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      4    1
  7Q GAIN WILD-TYPE   55    5
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0               4                55
  MX               1                 5
                   vv
clus                  I  II III  IV
  7Q GAIN MUTATED     5   9   8  20
  7Q GAIN WILD-TYPE  15  42  37 137
D14V7, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                 5                15
  II                9                42
  III               8                37
  IV               20               137
D14V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     11   34
  7Q GAIN WILD-TYPE   65  211
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               11                65
  YES              34               211
D14V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q GAIN MUTATED                                            14
  7Q GAIN WILD-TYPE                                          70
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q GAIN MUTATED                                        8             14
  7Q GAIN WILD-TYPE                                     49             89
                   vv
clus                LIFELONG NON-SMOKER
  7Q GAIN MUTATED                     6
  7Q GAIN WILD-TYPE                  60
D14V10, multiclass
                                             clus
vv                                            7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14                70
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                49
  CURRENT SMOKER                                           14                89
  LIFELONG NON-SMOKER                                       6                60
D14V11, continuous
D14V12, continuous

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    39  10
  8P GAIN WILD-TYPE 157 111
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               49               268 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10               111 
$`8P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 
        9.30         6.12        57.44         2.07        95.05         9.04 
TCGA-BB-4225 TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4729 
        4.60        23.61        37.87        20.52        13.55         5.46 
TCGA-CN-4731 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-6024 
       12.59        11.44        26.63         9.17         9.50         7.36 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CQ-5330 TCGA-CQ-6224 TCGA-CQ-7068 TCGA-CR-6467 
        3.91         3.68        29.46        32.35        22.78        58.42 
TCGA-CR-6470 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7389 TCGA-CV-5430 
       50.01        11.34        47.34         3.42        12.89       135.29 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 
       89.82        76.47        48.59        33.11        40.96        13.32 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6948 TCGA-CV-7243 TCGA-CV-7253 
        2.14         5.46        20.52        42.35        31.33        11.87 
TCGA-CV-7409 TCGA-CV-7428 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-7588 
       17.82        54.90         7.76        10.68         7.82        14.04 
TCGA-HD-8314 
        1.45 

$`8P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78        57.90         5.88         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
        8.02        14.79        12.99         3.72         7.76         6.12 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.37        18.31        10.19        17.59        13.87        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33        71.05         6.31        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        6.38        10.68        11.28        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5359 
        7.89        14.33        28.77        13.05         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
        3.19         9.07         6.61         6.18         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        27.65        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       37.87        26.24        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        17.95        87.55        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 
       13.35        17.75        57.07         7.07        43.23        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        5.88        90.08         9.70         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 
       56.68         4.73        47.47        36.00        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34         4.96        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        58.06        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 
      100.54        14.86        56.48       156.49         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       21.99        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
       37.78        34.78        16.96        15.68        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.02         1.81         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             1.45              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           135.29            210.94 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            13.55             14.33 
[1] "1.4 - 135.3 (13.6)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"8P GAIN WILD-TYPE" 
[1] "hr=" "2.1"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      9   40
  8P GAIN WILD-TYPE   81  191
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE               9                81
  MALE                40               191
                   vv
clus                T1 T2 T3 T4
  8P GAIN MUTATED    1 13  8 19
  8P GAIN WILD-TYPE 27 68 57 85
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1               1                27
  T2              13                68
  T3               8                57
  T4              19                85
                   vv
clus                N0 N1 N2 N3
  8P GAIN MUTATED   16  7 16  2
  8P GAIN WILD-TYPE 91 29 83  3
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              16                91
  N1               7                29
  N2              16                83
  N3               2                 3
D15V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      7    1
  8P GAIN WILD-TYPE   52    5
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0               7                52
  MX               1                 5
                   vv
clus                  I  II III  IV
  8P GAIN MUTATED     1   5   8  27
  8P GAIN WILD-TYPE  19  46  37 130
D15V7, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                 1                19
  II                5                46
  III               8                37
  IV               27               130
D15V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     10   39
  8P GAIN WILD-TYPE   66  206
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               10                66
  YES              39               206
D15V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P GAIN MUTATED                                            20
  8P GAIN WILD-TYPE                                          64
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P GAIN MUTATED                                        3             15
  8P GAIN WILD-TYPE                                     54             88
                   vv
clus                LIFELONG NON-SMOKER
  8P GAIN MUTATED                     9
  8P GAIN WILD-TYPE                  57
D15V10, multiclass
                                             clus
vv                                            8P GAIN MUTATED 8P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              20                64
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                54
  CURRENT SMOKER                                           15                88
  LIFELONG NON-SMOKER                                       9                57
D15V11, continuous
D15V12, continuous

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    86  45
  8Q GAIN WILD-TYPE 110  76
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              131               186 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               45                76 
$`8Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        9.30        37.28         8.15         6.12         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         2.07        12.99         3.72         7.76 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
       95.05         9.04         4.60         4.37        18.31        13.87 
TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4728 
       23.61        37.87        14.33        20.52        13.55        10.68 
TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 
        5.46        12.59         7.89        11.44        26.63         9.17 
TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5373 TCGA-CN-6013 
        9.50         8.28        16.21        11.84        13.58         5.06 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5329 
        7.36         1.38         3.91         3.68         3.75        27.65 
TCGA-CQ-5330 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-7065 
       29.46         4.21        28.60        32.35        14.96        33.07 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       22.78        84.23        11.77        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6482 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
       36.99        11.34        12.46        39.12        47.34        35.84 
TCGA-CR-7370 TCGA-CR-7379 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7401 TCGA-CV-5430 
        3.42        34.06        47.01        12.89        35.41       135.29 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      129.21        47.28        19.20        89.82        87.55        76.47 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 
       64.73        17.06        48.59        33.11        40.96        13.32 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6945 
        2.14         5.46        20.52        11.24       126.08        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7090 
       42.35        15.06        30.05         6.08         4.14       126.12 
TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7243 
       18.81         1.84        12.89        71.21        56.68        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       26.20        18.97        17.10        11.87        47.97         2.10 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 
       35.54        17.82         0.46        25.02         0.07       100.54 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7086 
      156.49        54.90         7.13        16.60         6.38         7.76 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-8568 TCGA-DQ-5624 
       27.22        10.68         8.22         7.82         3.45        37.78 
TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-8501 
       34.78        14.04        18.90         9.83         1.15         1.87 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        1.02         1.81         1.45         0.99         0.99 

$`8Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64         9.07         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-6869 TCGA-BA-6870 TCGA-BB-4217 TCGA-BB-7861 TCGA-BB-7862 
        5.88         8.02        14.79         6.12        10.19        17.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       20.98        14.04        71.05         6.31        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
        6.38        11.28        17.16        12.13        12.99        14.33 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 
       28.77        13.05         5.69        12.39        28.47        11.54 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        4.70         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
        9.07         6.61         6.18         5.82         2.73         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       33.80        10.42        11.21        32.35        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 
       13.25         4.21        26.76        48.03        45.27        16.70 
TCGA-CQ-7069 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6472 TCGA-CR-6474 
       29.59        54.64        37.87        26.24        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7371 
       11.51        15.75         9.27        47.18        40.90         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7380 TCGA-CR-7382 
       24.95        29.23         0.99        31.96        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       17.13        32.78        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5443 
       29.92        48.36        17.16       108.33        17.95        84.39 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 
       13.35        17.75        57.07         7.07        43.23        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        5.88        90.08         9.70         4.70        21.86        26.43 
TCGA-CV-6943 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       19.79        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 
       28.31         2.50        64.80       111.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 
        9.01         5.23        52.31        21.76        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7261 
        4.73        47.47        36.00        95.34         4.96        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 
       18.41        58.06       210.94        89.33         9.67        22.85 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7429 TCGA-CV-7430 
       25.94        34.09        14.86        56.48         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
       84.49        19.73       142.49        21.99        10.39        10.55 
TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 
       13.25         2.53         5.00         5.03         4.18         4.18 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       16.96        15.68        18.02        21.73        11.84        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         0.46         0.43         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82        22.75         5.26         4.01         3.72 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.07              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           156.49            210.94 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            14.33             13.84 
[1] "0.1 - 156.5 (14.3)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"8Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     36   97
  8Q GAIN WILD-TYPE   54  134
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              36                54
  MALE                97               134
                   vv
clus                T1 T2 T3 T4
  8Q GAIN MUTATED    9 31 24 51
  8Q GAIN WILD-TYPE 19 50 41 53
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1               9                19
  T2              31                50
  T3              24                41
  T4              51                53
                   vv
clus                N0 N1 N2 N3
  8Q GAIN MUTATED   37 16 47  3
  8Q GAIN WILD-TYPE 70 20 52  2
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              37                70
  N1              16                20
  N2              47                52
  N3               3                 2
D16V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     18    4
  8Q GAIN WILD-TYPE   41    2
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              18                41
  MX               4                 2
                   vv
clus                 I II III IV
  8Q GAIN MUTATED    6 19  17 73
  8Q GAIN WILD-TYPE 14 32  28 84
D16V7, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                 6                14
  II               19                32
  III              17                28
  IV               73                84
D16V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     31  102
  8Q GAIN WILD-TYPE   45  143
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               31                45
  YES             102               143
D16V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q GAIN MUTATED                                            39
  8Q GAIN WILD-TYPE                                          45
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q GAIN MUTATED                                       17             42
  8Q GAIN WILD-TYPE                                     40             61
                   vv
clus                LIFELONG NON-SMOKER
  8Q GAIN MUTATED                    32
  8Q GAIN WILD-TYPE                  34
D16V10, multiclass
                                             clus
vv                                            8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              39                45
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   17                40
  CURRENT SMOKER                                           42                61
  LIFELONG NON-SMOKER                                      32                34
D16V11, continuous
D16V12, continuous

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    25  13
  9P GAIN WILD-TYPE 171 108
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               38               279 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               13               108 
$`9P GAIN MUTATED`
TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-7870 TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-5370 
        5.88        57.44        37.87         9.17         8.28         8.52 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6996 TCGA-CQ-5329 TCGA-CQ-7063 
        6.81         7.50         6.18         3.75        27.65        48.03 
TCGA-CQ-7068 TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-7373 TCGA-CR-7395 TCGA-CV-5440 
       22.78        58.42         7.66        29.23        30.54        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 
       87.55        76.47        17.06        33.11        13.32        24.43 
TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7099 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7407 
        6.08         4.14         7.99        18.97        47.97        35.54 
TCGA-CV-7409 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-D6-6516 TCGA-DQ-5625 
       17.82        56.48       156.49         3.48        10.68        34.78 
TCGA-H7-7774 TCGA-HL-7533 
        0.99        22.75 

$`9P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         6.12         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 
       11.44        26.63        28.77        13.05         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       12.49        13.58         9.01         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
        4.21        14.96        26.76        45.27        33.07        16.70 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 
        6.02        11.90        10.22        11.34        11.64        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 
       40.90        35.84         3.42         3.06        24.95         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 
       47.28        19.20        17.95        84.39        64.73        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 
       12.03        42.35        15.06        30.05        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 
      126.12       111.12        18.81        12.66         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       26.20        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        58.06       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      100.54        14.86        54.90        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        1.15         0.46         0.43         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.99              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           156.49            210.94 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            20.86             13.64 
[1] "1.0 - 156.5 (20.9)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"9P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     15   23
  9P GAIN WILD-TYPE   75  208
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              15                75
  MALE                23               208
                   vv
clus                T1 T2 T3 T4
  9P GAIN MUTATED    3 10  7 15
  9P GAIN WILD-TYPE 25 71 58 89
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               3                25
  T2              10                71
  T3               7                58
  T4              15                89
                   vv
clus                N0 N1 N2 N3
  9P GAIN MUTATED   13  4  9  2
  9P GAIN WILD-TYPE 94 32 90  3
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              13                94
  N1               4                32
  N2               9                90
  N3               2                 3
D17V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      8    0
  9P GAIN WILD-TYPE   51    6
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0               8                51
  MX               0                 6
                   vv
clus                  I  II III  IV
  9P GAIN MUTATED     3   9   4  19
  9P GAIN WILD-TYPE  17  42  41 138
D17V7, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 3                17
  II                9                42
  III               4                41
  IV               19               138
D17V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      8   30
  9P GAIN WILD-TYPE   68  215
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                8                68
  YES              30               215
D17V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P GAIN MUTATED                                            13
  9P GAIN WILD-TYPE                                          71
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P GAIN MUTATED                                       10              7
  9P GAIN WILD-TYPE                                     47             96
                   vv
clus                LIFELONG NON-SMOKER
  9P GAIN MUTATED                     8
  9P GAIN WILD-TYPE                  58
D17V10, multiclass
                                             clus
vv                                            9P GAIN MUTATED 9P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              13                71
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   10                47
  CURRENT SMOKER                                            7                96
  LIFELONG NON-SMOKER                                       8                58
D17V11, continuous
D17V12, continuous

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    31  17
  9Q GAIN WILD-TYPE 165 104
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               48               269 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               17               104 
$`9Q GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4727 
        8.15         5.88        57.44        23.61        37.87         6.38 
TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5367 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6023 
       28.77         9.17        11.57         6.81         7.50         6.18 
TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-6467 TCGA-CR-7368 
        3.75        48.16        48.03        22.78        58.42        40.90 
TCGA-CR-7373 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 
       29.23        17.95        89.82        76.47        17.06        33.11 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7099 
       13.32        24.43         6.08         4.14        64.80         7.99 
TCGA-CV-7100 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7407 
        9.01        21.76        56.68        26.20        18.97        35.54 
TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7434 
       17.82        22.85        56.48       156.49         3.48         7.13 
TCGA-D6-6516 TCGA-D6-8569 TCGA-DQ-5625 TCGA-H7-7774 TCGA-HD-8314 TCGA-IQ-7630 
       10.68         4.18        34.78         0.99         1.45         5.26 

$`9Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78        57.90         6.12         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       10.19        17.59        13.87        20.98        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         6.31        13.55        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 
       12.99         7.89        14.33        11.44        26.63        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.54        11.84        12.49         8.52        13.58         9.01 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         9.07         6.61         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 
        2.73         3.91         3.68         3.29         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       45.27        33.07        16.70        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       87.55        84.39        64.73        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 
       48.59         7.07        43.23        40.96         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        8.38        28.31         2.50       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 
       12.66         5.23         1.84        52.31        12.89        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
       10.75       114.94         4.73        47.47        36.00        31.33 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        58.06       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 
       14.86        54.90        16.27        84.49        19.73       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18         3.45        37.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         4.01         3.72 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.99              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           156.49            210.94 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            18.46             13.64 
[1] "1.0 - 156.5 (18.5)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     15   35
  9Q GAIN WILD-TYPE   75  196
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              15                75
  MALE                35               196
                   vv
clus                T1 T2 T3 T4
  9Q GAIN MUTATED    3 13  8 23
  9Q GAIN WILD-TYPE 25 68 57 81
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               3                25
  T2              13                68
  T3               8                57
  T4              23                81
                   vv
clus                N0 N1 N2 N3
  9Q GAIN MUTATED   18  6 15  1
  9Q GAIN WILD-TYPE 89 30 84  4
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              18                89
  N1               6                30
  N2              15                84
  N3               1                 4
D18V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      8    1
  9Q GAIN WILD-TYPE   51    5
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0               8                51
  MX               1                 5
                   vv
clus                  I  II III  IV
  9Q GAIN MUTATED     3  10   4  30
  9Q GAIN WILD-TYPE  17  41  41 127
D18V7, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                 3                17
  II               10                41
  III               4                41
  IV               30               127
D18V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     13   37
  9Q GAIN WILD-TYPE   63  208
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               13                63
  YES              37               208
D18V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q GAIN MUTATED                                            18
  9Q GAIN WILD-TYPE                                          66
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q GAIN MUTATED                                       10              9
  9Q GAIN WILD-TYPE                                     47             94
                   vv
clus                LIFELONG NON-SMOKER
  9Q GAIN MUTATED                    10
  9Q GAIN WILD-TYPE                  56
D18V10, multiclass
                                             clus
vv                                            9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              18                66
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   10                47
  CURRENT SMOKER                                            9                94
  LIFELONG NON-SMOKER                                      10                56
D18V11, continuous
D18V12, continuous

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED     9   3
  10P GAIN WILD-TYPE 187 118
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                305 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 3                118 
$`10P GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-6869 TCGA-CN-4727 TCGA-CN-5356 TCGA-CN-6013 TCGA-CR-5247 
        6.25         8.02         6.38         9.50         5.06        11.77 
TCGA-CR-6488 TCGA-CR-7399 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7421 TCGA-F7-7848 
       12.46         5.92        95.34        47.97         0.07         1.15 

$`10P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       11.44        26.63        28.77        13.05         9.17         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         4.70         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        29.59        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64         7.66        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 
       31.33        26.20        18.97        17.10         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
       10.65         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.07               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             95.34             210.94 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              7.20              14.86 
[1] "0.1 - 95.3 (7.2)"   "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2   10
  10P GAIN WILD-TYPE   88  221
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                2                 88
  MALE                 10                221
                    vv
clus                 T1 T2 T3 T4
  10P GAIN MUTATED    0  2  3  6
  10P GAIN WILD-TYPE 28 79 62 98
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                0                 28
  T2                2                 79
  T3                3                 62
  T4                6                 98
                    vv
clus                  N0  N1  N2  N3
  10P GAIN MUTATED     7   1   2   0
  10P GAIN WILD-TYPE 100  35  97   5
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                7                100
  N1                1                 35
  N2                2                 97
  N3                0                  5
D19V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1    0
  10P GAIN WILD-TYPE   58    6
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0                1                 58
  MX                0                  6
                    vv
clus                   I  II III  IV
  10P GAIN MUTATED     0   2   2   7
  10P GAIN WILD-TYPE  20  49  43 150
D19V7, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                  0                 20
  II                 2                 49
  III                2                 43
  IV                 7                150
D19V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      4    8
  10P GAIN WILD-TYPE   72  237
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 4                 72
  YES                8                237
D19V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P GAIN MUTATED                                             1
  10P GAIN WILD-TYPE                                          83
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P GAIN MUTATED                                        4              5
  10P GAIN WILD-TYPE                                     53             98
                    vv
clus                 LIFELONG NON-SMOKER
  10P GAIN MUTATED                     2
  10P GAIN WILD-TYPE                  64
D19V10, multiclass
                                             clus
vv                                            10P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            10P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              98
  LIFELONG NON-SMOKER                                         64
D19V11, continuous
D19V12, continuous

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     4   2
  10Q GAIN WILD-TYPE 192 119
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                311 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                119 
$`10Q GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-6872 TCGA-CN-4727 TCGA-CN-6013 TCGA-CR-7399 TCGA-CV-6441 
        6.25        12.99         6.38         5.06         5.92         5.88 

$`10Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         5.00         8.02        14.79         2.07         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 
        5.00         5.03         4.18         3.45         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              5.06               0.07 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             12.99             210.94 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             6.085             14.790 
[1] "5.1 - 13.0 (6.1)"   "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
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        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "3.5"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    5
  10Q GAIN WILD-TYPE   89  226
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                1                 89
  MALE                  5                226
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     0   0   2   3
  10Q GAIN WILD-TYPE  28  81  63 101
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                0                 28
  T2                0                 81
  T3                2                 63
  T4                3                101
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED     3   0   2   0
  10Q GAIN WILD-TYPE 104  36  97   5
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                3                104
  N1                0                 36
  N2                2                 97
  N3                0                  5
D20V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    0
  10Q GAIN WILD-TYPE   58    6
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                1                 58
  MX                0                  6
                    vv
clus                   I  II III  IV
  10Q GAIN MUTATED     0   0   1   4
  10Q GAIN WILD-TYPE  20  51  44 153
D20V7, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                  0                 20
  II                 0                 51
  III                1                 44
  IV                 4                153
D20V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      4    2
  10Q GAIN WILD-TYPE   72  243
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 4                 72
  YES                2                243
D20V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q GAIN MUTATED                                             2
  10Q GAIN WILD-TYPE                                          82
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q GAIN MUTATED                                        1              2
  10Q GAIN WILD-TYPE                                     56            101
                    vv
clus                 LIFELONG NON-SMOKER
  10Q GAIN MUTATED                     1
  10Q GAIN WILD-TYPE                  65
D20V10, multiclass
                                             clus
vv                                            10Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            10Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                             101
  LIFELONG NON-SMOKER                                         65
D20V11, continuous
D20V12, continuous

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    12   4
  11P GAIN WILD-TYPE 184 117
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                301 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                117 
$`11P GAIN MUTATED`
TCGA-BB-4225 TCGA-CN-4737 TCGA-CN-5367 TCGA-CQ-5334 TCGA-CQ-7065 TCGA-CR-7370 
        4.60         7.89        11.57         4.21        33.07         3.42 
TCGA-CR-7382 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-7254 TCGA-CV-7409 
       26.17        89.82        40.96        13.32        47.97        17.82 
TCGA-D6-6516 TCGA-D6-6827 TCGA-HD-7229 TCGA-IQ-7630 
       10.68         4.18         0.07         5.26 

$`11P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.54        11.84        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       43.23        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        58.06        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.03         3.45         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.43         0.99         1.87         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7631 
        1.81         1.45         0.99         0.99        22.75         4.01 
TCGA-IQ-7632 
        3.72 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             89.82             210.94 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            11.125             14.330 
[1] "0.1 - 89.8 (11.1)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      4   12
  11P GAIN WILD-TYPE   86  219
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                4                 86
  MALE                 12                219
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED     2   7   1   4
  11P GAIN WILD-TYPE  26  74  64 100
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                2                 26
  T2                7                 74
  T3                1                 64
  T4                4                100
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED     6   1   5   1
  11P GAIN WILD-TYPE 101  35  94   4
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0                6                101
  N1                1                 35
  N2                5                 94
  N3                1                  4
D21V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2    0
  11P GAIN WILD-TYPE   57    6
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0                2                 57
  MX                0                  6
                    vv
clus                   I  II III  IV
  11P GAIN MUTATED     2   4   1   7
  11P GAIN WILD-TYPE  18  47  44 150
D21V7, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                  2                 18
  II                 4                 47
  III                1                 44
  IV                 7                150
D21V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      5   11
  11P GAIN WILD-TYPE   71  234
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 5                 71
  YES               11                234
D21V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P GAIN MUTATED                                             4
  11P GAIN WILD-TYPE                                          80
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P GAIN MUTATED                                        3              3
  11P GAIN WILD-TYPE                                     54            100
                    vv
clus                 LIFELONG NON-SMOKER
  11P GAIN MUTATED                     6
  11P GAIN WILD-TYPE                  60
D21V10, multiclass
                                             clus
vv                                            11P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            11P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                             100
  LIFELONG NON-SMOKER                                         60
D21V11, continuous
D21V12, continuous

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    12   5
  11Q GAIN WILD-TYPE 184 116
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                17                300 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 5                116 
$`11Q GAIN MUTATED`
TCGA-BA-5558 TCGA-BB-4225 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-5367 TCGA-CQ-5334 
       53.75         4.60        12.59         7.89        11.57         4.21 
TCGA-CQ-7065 TCGA-CR-7370 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6960 TCGA-CV-7416 
       33.07         3.42        89.82        40.96        28.31        25.02 
TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5631 TCGA-HD-7229 TCGA-IQ-7630 
       10.68         4.18        18.02         0.07         5.26 

$`11Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       11.28        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42        11.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 
       14.96        26.76        48.03        45.27        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.03         3.45         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         1.87         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45         0.99         0.99        22.75         4.01         3.72 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             89.82             210.94 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             11.57              14.33 
[1] "0.1 - 89.8 (11.6)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
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        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      6   11
  11Q GAIN WILD-TYPE   84  220
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                6                 84
  MALE                 11                220
                    vv
clus                 T1 T2 T3 T4
  11Q GAIN MUTATED    2  4  2  5
  11Q GAIN WILD-TYPE 26 77 63 99
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                2                 26
  T2                4                 77
  T3                2                 63
  T4                5                 99
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED     6   1   5   0
  11Q GAIN WILD-TYPE 101  35  94   5
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0                6                101
  N1                1                 35
  N2                5                 94
  N3                0                  5
D22V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1    0
  11Q GAIN WILD-TYPE   58    6
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0                1                 58
  MX                0                  6
                    vv
clus                   I  II III  IV
  11Q GAIN MUTATED     2   2   2   7
  11Q GAIN WILD-TYPE  18  49  43 150
D22V7, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                  2                 18
  II                 2                 49
  III                2                 43
  IV                 7                150
D22V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      6   11
  11Q GAIN WILD-TYPE   70  234
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 6                 70
  YES               11                234
D22V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q GAIN MUTATED                                             7
  11Q GAIN WILD-TYPE                                          77
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q GAIN MUTATED                                        2              2
  11Q GAIN WILD-TYPE                                     55            101
                    vv
clus                 LIFELONG NON-SMOKER
  11Q GAIN MUTATED                     6
  11Q GAIN WILD-TYPE                  60
D22V10, multiclass
                                             clus
vv                                            11Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            11Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                             101
  LIFELONG NON-SMOKER                                         60
D22V11, continuous
D22V12, continuous

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    39  21
  12P GAIN WILD-TYPE 157 100
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                60                257 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                21                100 
$`12P GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4725 
       57.44        95.05         9.04         4.60        17.59        10.19 
TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-5359 TCGA-CN-6023 TCGA-CN-6024 
        5.46         7.89        14.33        12.39         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CR-5243 TCGA-CR-5247 
        1.38         3.91        27.65        10.42        84.23        11.77 
TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7364 TCGA-CR-7390 TCGA-CR-7398 
       58.42         7.66        12.46        47.18        29.82         5.13 
TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
        5.92       135.29        17.16       129.21       108.33        89.82 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6945 
        7.07        40.96        90.08        20.52        11.24        12.03 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7245 
        4.14       111.12         1.84        52.31        21.76        26.20 
TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7418 
       18.97        47.97        36.13        35.54        17.82        25.94 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 
      142.49        16.60        21.99         7.76        10.68        16.96 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 
       11.84         9.83         1.15         0.99         1.87         0.82 

$`12P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        3.72         7.76         6.12         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       71.05        20.52         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6989 TCGA-CN-6992 
        4.41         3.19         9.07         6.61         5.82         2.73 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 
       21.50         2.93        38.89        29.46        33.80        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5248 TCGA-CR-5249 
       33.07        16.70        22.78        29.59        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         7.10        35.41        29.92        48.36 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       33.11        43.23        13.32        24.43         5.88         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
        9.70         5.46         4.70        21.86        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
        5.23        12.89        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        31.33        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 
        4.96        11.87         2.10        18.41        58.06       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 
        3.48        16.27        84.49        19.73         7.13         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 
       21.73        12.13        12.10        10.65         0.46         0.43 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.82               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            142.49             210.94 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            15.465             14.040 
[1] "0.8 - 142.5 (15.5)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     12   49
  12P GAIN WILD-TYPE   78  182
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               12                 78
  MALE                 49                182
                    vv
clus                 T1 T2 T3 T4
  12P GAIN MUTATED    3 19 13 19
  12P GAIN WILD-TYPE 25 62 52 85
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1                3                 25
  T2               19                 62
  T3               13                 52
  T4               19                 85
                    vv
clus                 N0 N1 N2 N3
  12P GAIN MUTATED   19  7 20  2
  12P GAIN WILD-TYPE 88 29 79  3
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               19                 88
  N1                7                 29
  N2               20                 79
  N3                2                  3
D23V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      9    1
  12P GAIN WILD-TYPE   50    5
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0                9                 50
  MX                1                  5
                    vv
clus                   I  II III  IV
  12P GAIN MUTATED     3  10  10  31
  12P GAIN WILD-TYPE  17  41  35 126
D23V7, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                  3                 17
  II                10                 41
  III               10                 35
  IV                31                126
D23V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     12   49
  12P GAIN WILD-TYPE   64  196
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                12                 64
  YES               49                196
D23V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P GAIN MUTATED                                            19
  12P GAIN WILD-TYPE                                          65
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P GAIN MUTATED                                        7             19
  12P GAIN WILD-TYPE                                     50             84
                    vv
clus                 LIFELONG NON-SMOKER
  12P GAIN MUTATED                    14
  12P GAIN WILD-TYPE                  52
D23V10, multiclass
                                             clus
vv                                            12P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                            19
  LIFELONG NON-SMOKER                                       14
                                             clus
vv                                            12P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 65
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      50
  CURRENT SMOKER                                              84
  LIFELONG NON-SMOKER                                         52
D23V11, continuous
D23V12, continuous

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    17   7
  12Q GAIN WILD-TYPE 179 114
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                24                293 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 7                114 
$`12Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-4725 TCGA-CN-4727 
       57.44         2.07        95.05         4.60        10.19         6.38 
TCGA-CN-4737 TCGA-CN-6023 TCGA-CQ-5332 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-7399 
        7.89         6.18        10.42        11.77        58.42         5.92 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-6941 TCGA-CV-6962 TCGA-CV-7091 
      135.29        17.16       108.33        11.24         4.14       111.12 
TCGA-CV-7102 TCGA-CV-7245 TCGA-CV-7440 TCGA-D6-6516 TCGA-DQ-7591 TCGA-H7-7774 
        1.84        26.20        21.99        10.68        11.84         0.99 

$`12Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.76         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.33        71.05        20.52         6.31        13.55         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       48.36       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
       28.31         2.50        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        18.90        21.73         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-8501 TCGA-HD-7229 
       10.65         1.15         0.46         0.43         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.99               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            135.29             210.94 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             10.96              14.79 
[1] "1.0 - 135.3 (11.0)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      3   21
  12Q GAIN WILD-TYPE   87  210
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                3                 87
  MALE                 21                210
                    vv
clus                 T1 T2 T3 T4
  12Q GAIN MUTATED    2  5  6  6
  12Q GAIN WILD-TYPE 26 76 59 98
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                2                 26
  T2                5                 76
  T3                6                 59
  T4                6                 98
                    vv
clus                 N0 N1 N2 N3
  12Q GAIN MUTATED    8  1  8  0
  12Q GAIN WILD-TYPE 99 35 91  5
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0                8                 99
  N1                1                 35
  N2                8                 91
  N3                0                  5
D24V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      3    0
  12Q GAIN WILD-TYPE   56    6
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0                3                 56
  MX                0                  6
                    vv
clus                   I  II III  IV
  12Q GAIN MUTATED     2   2   3  12
  12Q GAIN WILD-TYPE  18  49  42 145
D24V7, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                  2                 18
  II                 2                 49
  III                3                 42
  IV                12                145
D24V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      8   16
  12Q GAIN WILD-TYPE   68  229
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 8                 68
  YES               16                229
D24V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q GAIN MUTATED                                            11
  12Q GAIN WILD-TYPE                                          73
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q GAIN MUTATED                                        5              4
  12Q GAIN WILD-TYPE                                     52             99
                    vv
clus                 LIFELONG NON-SMOKER
  12Q GAIN MUTATED                     4
  12Q GAIN WILD-TYPE                  62
D24V10, multiclass
                                             clus
vv                                            12Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            12Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              99
  LIFELONG NON-SMOKER                                         62
D24V11, continuous
D24V12, continuous

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    10   7
  13Q GAIN WILD-TYPE 186 114
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                300 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 7                114 
$`13Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BB-4225 TCGA-CN-4729 TCGA-CN-6013 TCGA-CR-6488 TCGA-CR-7367 
        9.30         4.60         5.46         5.06        12.46        47.34 
TCGA-CR-7390 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-7095 TCGA-CV-7178 
       29.82        89.82        40.96        90.08        18.81        71.21 
TCGA-CV-7243 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7437 TCGA-DQ-5629 
       31.33         0.46        25.02        16.60        16.96 

$`13Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       13.55        10.19         4.67         6.38        10.68        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34        11.64         7.66        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       43.23        13.32        24.43         5.88         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73         7.13       142.49         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        4.18        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.46               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             90.08             210.94 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            18.810             13.755 
[1] "0.5 - 90.1 (18.8)"  "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
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        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      5   12
  13Q GAIN WILD-TYPE   85  219
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                5                 85
  MALE                 12                219
                    vv
clus                 T1 T2 T3 T4
  13Q GAIN MUTATED    0  6  2  7
  13Q GAIN WILD-TYPE 28 75 63 97
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                0                 28
  T2                6                 75
  T3                2                 63
  T4                7                 97
                    vv
clus                  N0  N1  N2  N3
  13Q GAIN MUTATED     3   5   4   0
  13Q GAIN WILD-TYPE 104  31  95   5
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                3                104
  N1                5                 31
  N2                4                 95
  N3                0                  5
D25V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      3    0
  13Q GAIN WILD-TYPE   56    6
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0                3                 56
  MX                0                  6
                    vv
clus                   I  II III  IV
  13Q GAIN MUTATED     0   3   5   7
  13Q GAIN WILD-TYPE  20  48  40 150
D25V7, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  0                 20
  II                 3                 48
  III                5                 40
  IV                 7                150
D25V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      4   13
  13Q GAIN WILD-TYPE   72  232
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 4                 72
  YES               13                232
D25V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q GAIN MUTATED                                             4
  13Q GAIN WILD-TYPE                                          80
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q GAIN MUTATED                                        3              4
  13Q GAIN WILD-TYPE                                     54             99
                    vv
clus                 LIFELONG NON-SMOKER
  13Q GAIN MUTATED                     5
  13Q GAIN WILD-TYPE                  61
D25V10, multiclass
                                             clus
vv                                            13Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            13Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              99
  LIFELONG NON-SMOKER                                         61
D25V11, continuous
D25V12, continuous

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    29  23
  14Q GAIN WILD-TYPE 167  98
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                52                265 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                23                 98 
$`14Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-8601 TCGA-CN-4723 
        9.30         6.12        12.99         3.72        20.52        13.55 
TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-6021 TCGA-CQ-5329 TCGA-CQ-5334 
        8.28        11.84        11.57         9.07        27.65         4.21 
TCGA-CQ-6220 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-7367 TCGA-CR-7370 
       32.35        16.90        12.46        11.51        47.34         3.42 
TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7390 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       19.92        17.13        29.82       129.21       108.33        89.82 
TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6942 
       57.07        33.11        40.96         2.14        26.43       126.08 
TCGA-CV-6950 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7178 TCGA-CV-7243 
       15.06       126.12        18.81         5.23        71.21        31.33 
TCGA-CV-7245 TCGA-CV-7409 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7434 
       26.20        17.82         9.67        22.85        25.02         7.13 
TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-DQ-5625 
       16.60         7.76        10.68         7.82         5.00        34.78 
TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7593 TCGA-HD-7753 
       16.96        18.90        12.13         0.16 

$`14Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 
        5.00         8.02        14.79         2.07         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33        71.05         6.31        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       16.21        11.54        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        1.48         4.41         3.19         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 
       38.89        29.46        33.80        10.42        11.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       26.17        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 
       64.73        17.06        13.35        17.75        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 
       43.23        13.32        24.43         5.88        90.08         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        5.46        20.52         4.70        21.86        11.24        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       12.03        42.35        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.80       111.12        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7418 
       58.06        35.54       210.94        89.33         0.46        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 
       54.90         3.48        16.27        84.49        19.73       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.39        10.55        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        8.22         2.53         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       37.78        15.68        18.02        14.04        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
        9.83        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         1.87         0.07         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.16               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            129.21             210.94 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             16.93              13.64 
[1] "0.2 - 129.2 (16.9)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
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        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     17   35
  14Q GAIN WILD-TYPE   73  196
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               17                 73
  MALE                 35                196
                    vv
clus                 T1 T2 T3 T4
  14Q GAIN MUTATED    4 12 11 17
  14Q GAIN WILD-TYPE 24 69 54 87
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1                4                 24
  T2               12                 69
  T3               11                 54
  T4               17                 87
                    vv
clus                 N0 N1 N2 N3
  14Q GAIN MUTATED   16  7 13  2
  14Q GAIN WILD-TYPE 91 29 86  3
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               16                 91
  N1                7                 29
  N2               13                 86
  N3                2                  3
D26V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      7    1
  14Q GAIN WILD-TYPE   52    5
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0                7                 52
  MX                1                  5
                    vv
clus                   I  II III  IV
  14Q GAIN MUTATED     4   9   9  22
  14Q GAIN WILD-TYPE  16  42  36 135
D26V7, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                  4                 16
  II                 9                 42
  III                9                 36
  IV                22                135
D26V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      9   43
  14Q GAIN WILD-TYPE   67  202
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 9                 67
  YES               43                202
D26V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q GAIN MUTATED                                            15
  14Q GAIN WILD-TYPE                                          69
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q GAIN MUTATED                                        5             18
  14Q GAIN WILD-TYPE                                     52             85
                    vv
clus                 LIFELONG NON-SMOKER
  14Q GAIN MUTATED                    12
  14Q GAIN WILD-TYPE                  54
D26V10, multiclass
                                             clus
vv                                            14Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               15
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                       12
                                             clus
vv                                            14Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 69
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              85
  LIFELONG NON-SMOKER                                         54
D26V11, continuous
D26V12, continuous

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED     8   4
  15Q GAIN WILD-TYPE 188 117
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                305 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                117 
$`15Q GAIN MUTATED`
TCGA-BA-6871 TCGA-BB-7861 TCGA-CN-4729 TCGA-CN-4737 TCGA-CR-6477 TCGA-CR-6484 
        2.07        10.19         5.46         7.89        16.90        11.64 
TCGA-CV-7178 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-D6-6516 TCGA-DQ-7589 
       71.21         9.67        22.85        25.94        10.68        18.90 

$`15Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.31        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       13.55        10.19         4.67         6.38        10.68        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        36.99        18.51         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 
       58.06        35.54        17.82       210.94        89.33         0.46 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              2.07               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             71.21             210.94 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             11.16              14.33 
[1] "2.1 - 71.2 (11.2)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
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        TCGA-IQ-7631         TCGA-IQ-7632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      4    8
  15Q GAIN WILD-TYPE   86  223
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                4                 86
  MALE                  8                223
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED     2   3   0   4
  15Q GAIN WILD-TYPE  26  78  65 100
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                2                 26
  T2                3                 78
  T3                0                 65
  T4                4                100
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED     2   2   5   0
  15Q GAIN WILD-TYPE 105  34  94   5
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0                2                105
  N1                2                 34
  N2                5                 94
  N3                0                  5
D27V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1    0
  15Q GAIN WILD-TYPE   58    6
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0                1                 58
  MX                0                  6
                    vv
clus                   I  II III  IV
  15Q GAIN MUTATED     1   1   2   5
  15Q GAIN WILD-TYPE  19  50  43 152
D27V7, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                  1                 19
  II                 1                 50
  III                2                 43
  IV                 5                152
D27V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   11
  15Q GAIN WILD-TYPE   75  234
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 75
  YES               11                234
D27V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q GAIN MUTATED                                             5
  15Q GAIN WILD-TYPE                                          79
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q GAIN MUTATED                                        2              1
  15Q GAIN WILD-TYPE                                     55            102
                    vv
clus                 LIFELONG NON-SMOKER
  15Q GAIN MUTATED                     3
  15Q GAIN WILD-TYPE                  63
D27V10, multiclass
                                             clus
vv                                            15Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            15Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                             102
  LIFELONG NON-SMOKER                                         63
D27V11, continuous
D27V12, continuous

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    14   7
  16P GAIN WILD-TYPE 182 114
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                296 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 7                114 
$`16P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6869 TCGA-CN-4737 TCGA-CN-6013 TCGA-CQ-5329 
        9.30         5.00         8.02         7.89         5.06        27.65 
TCGA-CR-7390 TCGA-CV-5978 TCGA-CV-6941 TCGA-CV-7091 TCGA-CV-7243 TCGA-CV-7245 
       29.82         7.07        11.24       111.12        31.33        26.20 
TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7423 TCGA-CV-7433 TCGA-CX-7086 TCGA-D6-6516 
        2.10        17.82       100.54        19.73         7.76        10.68 
TCGA-D6-8569 TCGA-DQ-5625 TCGA-IQ-7631 
        4.18        34.78         4.01 

$`16P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         4.70         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       26.43       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       58.06        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
       22.85        25.02        25.94         0.07        34.09        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       10.55        27.22        13.25         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5629 
        5.00         5.03         4.18         3.45        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7632 
        5.26         3.72 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              2.10               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            111.12             210.94 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             10.68              14.33 
[1] "2.1 - 111.1 (10.7)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      5   16
  16P GAIN WILD-TYPE   85  215
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                5                 85
  MALE                 16                215
                    vv
clus                 T1 T2 T3 T4
  16P GAIN MUTATED    2  6  4  7
  16P GAIN WILD-TYPE 26 75 61 97
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                2                 26
  T2                6                 75
  T3                4                 61
  T4                7                 97
                    vv
clus                 N0 N1 N2 N3
  16P GAIN MUTATED   11  2  3  2
  16P GAIN WILD-TYPE 96 34 96  3
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               11                 96
  N1                2                 34
  N2                3                 96
  N3                2                  3
D28V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      3    0
  16P GAIN WILD-TYPE   56    6
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0                3                 56
  MX                0                  6
                    vv
clus                   I  II III  IV
  16P GAIN MUTATED     2   4   5   8
  16P GAIN WILD-TYPE  18  47  40 149
D28V7, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                  2                 18
  II                 4                 47
  III                5                 40
  IV                 8                149
D28V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      4   17
  16P GAIN WILD-TYPE   72  228
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 4                 72
  YES               17                228
D28V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P GAIN MUTATED                                             5
  16P GAIN WILD-TYPE                                          79
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P GAIN MUTATED                                        2              8
  16P GAIN WILD-TYPE                                     55             95
                    vv
clus                 LIFELONG NON-SMOKER
  16P GAIN MUTATED                     5
  16P GAIN WILD-TYPE                  61
D28V10, multiclass
                                             clus
vv                                            16P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            16P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              95
  LIFELONG NON-SMOKER                                         61
D28V11, continuous
D28V12, continuous

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    16  12
  16Q GAIN WILD-TYPE 180 109
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                28                289 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                12                109 
$`16Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6868 TCGA-CN-4737 TCGA-CN-6013 TCGA-CN-6989 TCGA-CQ-5329 
        9.30         5.00         7.89         5.06         5.82        27.65 
TCGA-CR-7390 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-7091 TCGA-CV-7099 
       29.82        33.11         7.07        43.23       111.12         7.99 
TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7406 
        1.84        21.76        71.21        31.33        26.20        58.06 
TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7423 TCGA-CV-7433 TCGA-D6-6516 TCGA-D6-8568 
       17.82        22.85       100.54        19.73        10.68         3.45 
TCGA-D6-8569 TCGA-DQ-5631 TCGA-HD-8314 TCGA-IQ-7631 
        4.18        18.02         1.45         4.01 

$`16Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       11.28        12.59        17.16        12.13        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6003 
       17.06        13.35        17.75        57.07        48.59        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
       28.31         2.50         4.14        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 
       12.66         9.01         5.23        52.31        12.89        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
        0.46        25.02        25.94         0.07        34.09        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       16.96        15.68        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.81         0.99         0.99        22.75         5.26 
TCGA-IQ-7632 
        3.72 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              1.45               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            111.12             210.94 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             17.92              14.04 
[1] "1.4 - 111.1 (17.9)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      7   21
  16Q GAIN WILD-TYPE   83  210
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                7                 83
  MALE                 21                210
                    vv
clus                 T1 T2 T3 T4
  16Q GAIN MUTATED    2 11  4  8
  16Q GAIN WILD-TYPE 26 70 61 96
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                2                 26
  T2               11                 70
  T3                4                 61
  T4                8                 96
                    vv
clus                 N0 N1 N2 N3
  16Q GAIN MUTATED   10  1  9  2
  16Q GAIN WILD-TYPE 97 35 90  3
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               10                 97
  N1                1                 35
  N2                9                 90
  N3                2                  3
D29V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      4    0
  16Q GAIN WILD-TYPE   55    6
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0                4                 55
  MX                0                  6
                    vv
clus                   I  II III  IV
  16Q GAIN MUTATED     2   8   2  13
  16Q GAIN WILD-TYPE  18  43  43 144
D29V7, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                  2                 18
  II                 8                 43
  III                2                 43
  IV                13                144
D29V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      6   22
  16Q GAIN WILD-TYPE   70  223
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 6                 70
  YES               22                223
D29V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q GAIN MUTATED                                             8
  16Q GAIN WILD-TYPE                                          76
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q GAIN MUTATED                                        5              6
  16Q GAIN WILD-TYPE                                     52             97
                    vv
clus                 LIFELONG NON-SMOKER
  16Q GAIN MUTATED                     6
  16Q GAIN WILD-TYPE                  60
D29V10, multiclass
                                             clus
vv                                            16Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            16Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              97
  LIFELONG NON-SMOKER                                         60
D29V11, continuous
D29V12, continuous

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    10   9
  17P GAIN WILD-TYPE 186 112
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                19                298 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                112 
$`17P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6872 TCGA-BB-8601 TCGA-CN-6023 TCGA-CQ-5329 TCGA-CQ-6229 
        9.30        12.99        20.52         6.18        27.65        26.76 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5977 
       11.77        58.42       135.29       129.21        89.82        33.11 
TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7095 
       90.08        11.24        15.06        30.05         4.14        18.81 
TCGA-CV-7414 
        0.46 

$`17P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         5.00         8.02        14.79         2.07         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 
       37.87        14.04        14.33        71.05         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 
        1.48         4.41         3.19         9.07         6.61         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
        4.21        14.96        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        5.13         5.92        35.41        29.92        48.36        17.16 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        19.20        17.95        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43       126.08        19.79        12.03        42.35 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
       28.31         2.50        64.80       126.12       111.12        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.46               0.07 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            135.29             210.94 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            20.520             13.755 
[1] "0.5 - 135.3 (20.5)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      2   17
  17P GAIN WILD-TYPE   88  214
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                2                 88
  MALE                 17                214
                    vv
clus                 T1 T2 T3 T4
  17P GAIN MUTATED    0  4  8  5
  17P GAIN WILD-TYPE 28 77 57 99
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                0                 28
  T2                4                 77
  T3                8                 57
  T4                5                 99
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED     5   3   7   0
  17P GAIN WILD-TYPE 102  33  92   5
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                5                102
  N1                3                 33
  N2                7                 92
  N3                0                  5
D30V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      3    1
  17P GAIN WILD-TYPE   56    5
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0                3                 56
  MX                1                  5
                    vv
clus                   I  II III  IV
  17P GAIN MUTATED     0   3   6   8
  17P GAIN WILD-TYPE  20  48  39 149
D30V7, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  0                 20
  II                 3                 48
  III                6                 39
  IV                 8                149
D30V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      5   14
  17P GAIN WILD-TYPE   71  231
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 5                 71
  YES               14                231
D30V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P GAIN MUTATED                                             8
  17P GAIN WILD-TYPE                                          76
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P GAIN MUTATED                                        4              5
  17P GAIN WILD-TYPE                                     53             98
                    vv
clus                 LIFELONG NON-SMOKER
  17P GAIN MUTATED                     2
  17P GAIN WILD-TYPE                  64
D30V10, multiclass
                                             clus
vv                                            17P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            17P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              98
  LIFELONG NON-SMOKER                                         64
D30V11, continuous
D30V12, continuous

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    12  10
  17Q GAIN WILD-TYPE 184 111
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                22                295 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                111 
$`17Q GAIN MUTATED`
TCGA-BA-6872 TCGA-BB-8601 TCGA-CN-6023 TCGA-CN-6988 TCGA-CR-5247 TCGA-CR-6467 
       12.99        20.52         6.18         1.38        11.77        58.42 
TCGA-CR-6473 TCGA-CR-7390 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 TCGA-CV-5977 
       36.99        29.82         5.92       135.29        89.82        33.11 
TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 
       90.08        11.24        15.06        30.05         6.08         4.14 
TCGA-CV-7102 TCGA-CV-7250 TCGA-CV-7424 TCGA-D6-8569 
        1.84        95.34        14.86         4.18 

$`17Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 
       20.98        37.87        14.04        14.33        71.05         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        7.36         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       33.07        16.70        22.78        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       37.87        26.24        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 
        5.13        35.41        29.92        48.36        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        19.20        17.95        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43       126.08        19.79        12.03        42.35 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 
       36.00        31.33        26.20        18.97        17.10         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.45        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              1.38               0.07 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            135.29             210.94 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             14.96              14.04 
[1] "1.4 - 135.3 (15.0)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      3   20
  17Q GAIN WILD-TYPE   87  211
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                3                 87
  MALE                 20                211
                    vv
clus                 T1 T2 T3 T4
  17Q GAIN MUTATED    0  2 10  8
  17Q GAIN WILD-TYPE 28 79 55 96
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                0                 28
  T2                2                 79
  T3               10                 55
  T4                8                 96
                    vv
clus                  N0  N1  N2  N3
  17Q GAIN MUTATED     4   3  12   0
  17Q GAIN WILD-TYPE 103  33  87   5
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0                4                103
  N1                3                 33
  N2               12                 87
  N3                0                  5
D31V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5    2
  17Q GAIN WILD-TYPE   54    4
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0                5                 54
  MX                2                  4
                    vv
clus                   I  II III  IV
  17Q GAIN MUTATED     0   1   4  15
  17Q GAIN WILD-TYPE  20  50  41 142
D31V7, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                  0                 20
  II                 1                 50
  III                4                 41
  IV                15                142
D31V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5   18
  17Q GAIN WILD-TYPE   71  227
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 5                 71
  YES               18                227
D31V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q GAIN MUTATED                                            11
  17Q GAIN WILD-TYPE                                          73
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q GAIN MUTATED                                        5              7
  17Q GAIN WILD-TYPE                                     52             96
                    vv
clus                 LIFELONG NON-SMOKER
  17Q GAIN MUTATED                     0
  17Q GAIN WILD-TYPE                  66
D31V10, multiclass
                                             clus
vv                                            17Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             7
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            17Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              96
  LIFELONG NON-SMOKER                                         66
D31V11, continuous
D31V12, continuous

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    27  23
  18P GAIN WILD-TYPE 169  98
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                267 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                23                 98 
$`18P GAIN MUTATED`
TCGA-BA-4076 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4223 
       13.64        57.44         8.02         2.07         3.72        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7870 TCGA-CN-5366 TCGA-CN-6012 
        9.04         4.60        18.31        37.87        11.84         4.70 
TCGA-CN-6988 TCGA-CQ-5332 TCGA-CQ-6227 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-6493 
        1.38        10.42         4.21        58.42        11.34         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7390 TCGA-CR-7402 TCGA-CV-5432 
       47.18        39.12         3.42        29.82        29.92       129.21 
TCGA-CV-5434 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6441 
      108.33        87.55        57.07        33.11        13.32         5.88 
TCGA-CV-6935 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 
        9.70        11.24        12.03        15.06        30.05         4.14 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7255 
        5.23         1.84        31.33        18.97        11.87         2.10 
TCGA-CV-7409 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-8568 TCGA-DQ-5631 
       17.82         7.13        16.60        21.99         3.45        18.02 
TCGA-DQ-7590 TCGA-DQ-7595 
       21.73        10.65 

$`18P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4227 
        5.00        14.79        12.99         7.76         6.12         4.37 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 
       12.39        28.47         8.28        16.21        11.54        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        32.35        13.25        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       11.77        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
       35.41        48.36       135.29        17.16        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        89.82        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       13.35        17.75        48.59         7.07        43.23        40.96 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       24.43        90.08         2.14         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6952 
       21.86        26.43       126.08        19.79        42.35         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 
       26.20        17.10        95.34         4.96        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        58.06        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 
       16.27        84.49        19.73       142.49         6.38        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 
        7.82         2.53         5.00         5.03         4.18         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        16.96        15.68        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 
       11.84         9.83        12.13        12.10         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              1.38               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            129.21             210.94 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            12.675             14.330 
[1] "1.4 - 129.2 (12.7)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      4   48
  18P GAIN WILD-TYPE   86  183
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                4                 86
  MALE                 48                183
                    vv
clus                 T1 T2 T3 T4
  18P GAIN MUTATED    0 10 16 16
  18P GAIN WILD-TYPE 28 71 49 88
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                0                 28
  T2               10                 71
  T3               16                 49
  T4               16                 88
                    vv
clus                 N0 N1 N2 N3
  18P GAIN MUTATED   15  3 18  1
  18P GAIN WILD-TYPE 92 33 81  4
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               15                 92
  N1                3                 33
  N2               18                 81
  N3                1                  4
D32V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      6    1
  18P GAIN WILD-TYPE   53    5
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0                6                 53
  MX                1                  5
                    vv
clus                   I  II III  IV
  18P GAIN MUTATED     0   5  11  26
  18P GAIN WILD-TYPE  20  46  34 131
D32V7, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                  0                 20
  II                 5                 46
  III               11                 34
  IV                26                131
D32V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      9   43
  18P GAIN WILD-TYPE   67  202
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 9                 67
  YES               43                202
D32V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P GAIN MUTATED                                            16
  18P GAIN WILD-TYPE                                          68
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P GAIN MUTATED                                        5             20
  18P GAIN WILD-TYPE                                     52             83
                    vv
clus                 LIFELONG NON-SMOKER
  18P GAIN MUTATED                     9
  18P GAIN WILD-TYPE                  57
D32V10, multiclass
                                             clus
vv                                            18P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               16
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                            20
  LIFELONG NON-SMOKER                                        9
                                             clus
vv                                            18P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 68
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              83
  LIFELONG NON-SMOKER                                         57
D32V11, continuous
D32V12, continuous

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    15   5
  18Q GAIN WILD-TYPE 181 116
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                297 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                116 
$`18Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7870 
       57.44         2.07        95.05         4.60        18.31        37.87 
TCGA-CN-6012 TCGA-CN-6024 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 
        4.70         7.36        58.42        11.34        47.34         3.42 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-6433 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-7103 
      129.21       108.33        13.32        15.06        30.05        52.31 
TCGA-CV-7406 TCGA-DQ-7590 
       58.06        21.73 

$`18Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7861 TCGA-BB-7862 
        7.76         6.12         9.04         4.37        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.87        23.61        20.98        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         7.50         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         6.18         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       48.36       135.29        17.16        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       43.23        40.96        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 
       11.24       126.08        19.79        12.03        42.35         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 
       12.66         7.99         9.01         5.23         1.84        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       16.96        15.68        18.02        14.04        18.90        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              2.07               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            129.21             210.94 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             25.89              13.64 
[1] "2.1 - 129.2 (25.9)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
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        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   18
  18Q GAIN WILD-TYPE   88  213
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                2                 88
  MALE                 18                213
                    vv
clus                 T1 T2 T3 T4
  18Q GAIN MUTATED    0  5  4  5
  18Q GAIN WILD-TYPE 28 76 61 99
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                0                 28
  T2                5                 76
  T3                4                 61
  T4                5                 99
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED     4   2   7   0
  18Q GAIN WILD-TYPE 103  34  92   5
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                4                103
  N1                2                 34
  N2                7                 92
  N3                0                  5
D33V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      3    0
  18Q GAIN WILD-TYPE   56    6
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0                3                 56
  MX                0                  6
                    vv
clus                   I  II III  IV
  18Q GAIN MUTATED     0   2   3   9
  18Q GAIN WILD-TYPE  20  49  42 148
D33V7, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                  0                 20
  II                 2                 49
  III                3                 42
  IV                 9                148
D33V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5   15
  18Q GAIN WILD-TYPE   71  230
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 5                 71
  YES               15                230
D33V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q GAIN MUTATED                                             9
  18Q GAIN WILD-TYPE                                          75
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q GAIN MUTATED                                        2              7
  18Q GAIN WILD-TYPE                                     55             96
                    vv
clus                 LIFELONG NON-SMOKER
  18Q GAIN MUTATED                     2
  18Q GAIN WILD-TYPE                  64
D33V10, multiclass
                                             clus
vv                                            18Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             7
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            18Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 75
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              96
  LIFELONG NON-SMOKER                                         64
D33V11, continuous
D33V12, continuous

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    11   1
  19P GAIN WILD-TYPE 185 120
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                305 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 1                120 
$`19P GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-6021 
       57.44        95.05         4.60        14.04        20.52         9.07 
TCGA-CN-6024 TCGA-CQ-5323 TCGA-CR-6467 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-7245 
        7.36        48.16        58.42        12.89        76.47        26.20 

$`19P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        3.72         7.76         6.12         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.33        71.05         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        3.19         6.61         6.18         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 
        3.91         3.68         3.75         3.29         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 
        5.00         5.03         4.18         3.45         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              4.60               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             95.05             210.94 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             23.36              13.87 
[1] "4.6 - 95.0 (23.4)"  "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "6.7"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3    9
  19P GAIN WILD-TYPE   87  222
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                3                 87
  MALE                  9                222
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED     1   2   1   4
  19P GAIN WILD-TYPE  27  79  64 100
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                1                 27
  T2                2                 79
  T3                1                 64
  T4                4                100
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED     2   2   4   0
  19P GAIN WILD-TYPE 105  34  95   5
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0                2                105
  N1                2                 34
  N2                4                 95
  N3                0                  5
D34V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      2    1
  19P GAIN WILD-TYPE   57    5
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                2                 57
  MX                1                  5
                    vv
clus                   I  II III  IV
  19P GAIN MUTATED     1   0   2   5
  19P GAIN WILD-TYPE  19  51  43 152
D34V7, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                  1                 19
  II                 0                 51
  III                2                 43
  IV                 5                152
D34V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3    9
  19P GAIN WILD-TYPE   73  236
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 3                 73
  YES                9                236
D34V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P GAIN MUTATED                                             6
  19P GAIN WILD-TYPE                                          78
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P GAIN MUTATED                                        1              3
  19P GAIN WILD-TYPE                                     56            100
                    vv
clus                 LIFELONG NON-SMOKER
  19P GAIN MUTATED                     2
  19P GAIN WILD-TYPE                  64
D34V10, multiclass
                                             clus
vv                                            19P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            19P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                             100
  LIFELONG NON-SMOKER                                         64
D34V11, continuous
D34V12, continuous

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    13   8
  19Q GAIN WILD-TYPE 183 113
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                296 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 8                113 
$`19Q GAIN MUTATED`
TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-6021 TCGA-CN-6024 
       57.90        57.44        95.05         4.60         9.07         7.36 
TCGA-CQ-5324 TCGA-CR-6467 TCGA-CR-7367 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-6937 
       39.68        58.42        47.34        12.89        76.47        20.52 
TCGA-CV-7243 TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7435 
       31.33        11.87        58.06        35.54        17.82       142.49 
TCGA-CV-7437 TCGA-DQ-7592 TCGA-IQ-7631 
       16.60         9.83         4.01 

$`19Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.76         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
        4.41         3.19         6.61         6.18         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       48.16        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 
        4.96        47.97         2.10        36.13        18.41       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
       11.84        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7632 
        5.26         3.72 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              4.01               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            142.49             210.94 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             31.33              13.61 
[1] "4.0 - 142.5 (31.3)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      5   16
  19Q GAIN WILD-TYPE   85  215
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                5                 85
  MALE                 16                215
                    vv
clus                 T1 T2 T3 T4
  19Q GAIN MUTATED    0  9  2  5
  19Q GAIN WILD-TYPE 28 72 63 99
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                0                 28
  T2                9                 72
  T3                2                 63
  T4                5                 99
                    vv
clus                  N0  N1  N2  N3
  19Q GAIN MUTATED     5   3   4   1
  19Q GAIN WILD-TYPE 102  33  95   4
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0                5                102
  N1                3                 33
  N2                4                 95
  N3                1                  4
D35V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      3    0
  19Q GAIN WILD-TYPE   56    6
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0                3                 56
  MX                0                  6
                    vv
clus                   I  II III  IV
  19Q GAIN MUTATED     0   5   3   7
  19Q GAIN WILD-TYPE  20  46  42 150
D35V7, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                  0                 20
  II                 5                 46
  III                3                 42
  IV                 7                150
D35V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      4   17
  19Q GAIN WILD-TYPE   72  228
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 4                 72
  YES               17                228
D35V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q GAIN MUTATED                                             7
  19Q GAIN WILD-TYPE                                          77
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q GAIN MUTATED                                        1              5
  19Q GAIN WILD-TYPE                                     56             98
                    vv
clus                 LIFELONG NON-SMOKER
  19Q GAIN MUTATED                     6
  19Q GAIN WILD-TYPE                  60
D35V10, multiclass
                                             clus
vv                                            19Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            19Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                              98
  LIFELONG NON-SMOKER                                         60
D35V11, continuous
D35V12, continuous

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    45  20
  20P GAIN WILD-TYPE 151 101
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                65                252 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                20                101 
$`20P GAIN MUTATED`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 
        9.07         8.15         5.00        12.99         7.76         9.04 
TCGA-BB-4225 TCGA-BB-7872 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 
        4.60        14.33        11.28        12.59         7.89        11.44 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 
       28.77        13.05        28.47         9.01         4.70         5.06 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-5330 
        6.18         7.36         1.38         5.82        27.65        29.46 
TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-7365 
       32.35        32.35        84.23        11.77        58.42        39.12 
TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5434 
       47.34         3.42        24.95         5.92       135.29       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5973 
       47.28        19.20        76.47        64.73        13.35        57.07 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6962 
       12.03        42.35        65.82         7.13         8.38         4.14 
TCGA-CV-7090 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7255 
      126.12        21.76        71.21        31.33        26.20         2.10 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6516 
       25.02       100.54        16.60        10.39         7.76        10.68 
TCGA-D6-6517 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-7591 TCGA-HD-8314 
        8.22         4.18        37.78        11.84         1.45 

$`20P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64        37.28         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79         2.07         3.72         6.12        95.05 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       20.98        37.87        14.04        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-5355 
       17.16        12.13        12.99        14.33        26.63         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        9.50         5.69        12.39         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.84        11.57        12.49         8.52        13.58         6.81 
TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        7.50         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        9.07         6.61         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       38.89        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7373 
        9.27        47.18        40.90        35.84         3.06        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 
       35.41        29.92        48.36        17.16       129.21        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5976 
       89.82        87.55        84.39        17.06        17.75        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 
       15.06        30.05         6.08        53.92        10.98        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 
        9.01         5.23         1.84        52.31        12.89        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       17.10        95.34         4.96        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       10.55        27.22        13.25         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18         3.45        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        18.90        21.73         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              1.38               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            135.29             210.94 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            12.990             14.825 
[1] "1.4 - 135.3 (13.0)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     15   50
  20P GAIN WILD-TYPE   75  181
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               15                 75
  MALE                 50                181
                    vv
clus                 T1 T2 T3 T4
  20P GAIN MUTATED    3 14 13 25
  20P GAIN WILD-TYPE 25 67 52 79
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1                3                 25
  T2               14                 67
  T3               13                 52
  T4               25                 79
                    vv
clus                 N0 N1 N2 N3
  20P GAIN MUTATED   15  8 24  1
  20P GAIN WILD-TYPE 92 28 75  4
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               15                 92
  N1                8                 28
  N2               24                 75
  N3                1                  4
D36V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     13    0
  20P GAIN WILD-TYPE   46    6
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               13                 46
  MX                0                  6
                    vv
clus                   I  II III  IV
  20P GAIN MUTATED     3   6   9  37
  20P GAIN WILD-TYPE  17  45  36 120
D36V7, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                  3                 17
  II                 6                 45
  III                9                 36
  IV                37                120
D36V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     24   41
  20P GAIN WILD-TYPE   52  204
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                24                 52
  YES               41                204
D36V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P GAIN MUTATED                                            20
  20P GAIN WILD-TYPE                                          64
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P GAIN MUTATED                                        8             18
  20P GAIN WILD-TYPE                                     49             85
                    vv
clus                 LIFELONG NON-SMOKER
  20P GAIN MUTATED                    17
  20P GAIN WILD-TYPE                  49
D36V10, multiclass
                                             clus
vv                                            20P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               20
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                       17
                                             clus
vv                                            20P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 64
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      49
  CURRENT SMOKER                                              85
  LIFELONG NON-SMOKER                                         49
D36V11, continuous
D36V12, continuous

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    42  27
  20Q GAIN WILD-TYPE 154  94
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                69                248 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                27                 94 
$`20Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-7269 
        9.30         9.07         8.15         5.00        12.99         7.76 
TCGA-BB-4225 TCGA-BB-7864 TCGA-BB-7872 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4731 
        4.60        23.61        14.33        10.19        11.28        12.59 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5374 TCGA-CN-6011 
        7.89        11.44        28.77        13.05         9.01         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        4.70         5.06         6.18         1.38         5.82         3.91 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5247 TCGA-CR-6467 
       27.65        29.46        32.35        32.35        11.77        58.42 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7372 TCGA-CV-5430 TCGA-CV-5432 
        9.27        39.12        47.34        24.95       135.29       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-6003 
      108.33        47.28        19.20        76.47        64.73        40.96 
TCGA-CV-6936 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6956 
        5.46        12.03        42.35        30.05        65.82         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7177 
        8.38        28.31         4.14       126.12        12.66        21.76 
TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7416 
       71.21        31.33        26.20         2.10        17.82        25.02 
TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-8569 
      100.54        16.60         7.76        10.68         7.82         4.18 
TCGA-DQ-5624 TCGA-DQ-5631 TCGA-HD-8314 
       37.78        18.02         1.45 

$`20Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64        37.28         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
        6.12         5.88         7.96        53.75        57.44         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       14.79         2.07         3.72         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.37        18.31        10.19        17.59        13.87        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       37.87        14.04        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 TCGA-CN-4735 
        4.67         6.38        10.68         5.46        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       12.99        14.33        26.63         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 
       11.57        12.49         8.52        13.58         6.81         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        7.36         2.73         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 
       48.16        39.68        21.50         2.93        38.89        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        28.60        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       33.07        16.70        22.78        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.64         7.66        12.46        11.51        15.75        47.18 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.42         3.06        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 
       35.41        29.92        48.36        17.16        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       87.55        84.39        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        33.11         7.07        43.23        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         9.70        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 
       21.86        26.43        11.24       126.08        19.79        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 
        6.08        53.92        10.98         2.50        64.80       111.12 
TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       18.81         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       12.89        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 
       47.97        36.13        18.41        58.06        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       21.99        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18         3.45        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       16.96        15.68        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.81         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              1.38               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            135.29             210.94 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            13.050             14.185 
[1] "1.4 - 135.3 (13.1)" "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     13   56
  20Q GAIN WILD-TYPE   77  175
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               13                 77
  MALE                 56                175
                    vv
clus                 T1 T2 T3 T4
  20Q GAIN MUTATED    3 17 14 27
  20Q GAIN WILD-TYPE 25 64 51 77
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1                3                 25
  T2               17                 64
  T3               14                 51
  T4               27                 77
                    vv
clus                 N0 N1 N2 N3
  20Q GAIN MUTATED   19  9 23  2
  20Q GAIN WILD-TYPE 88 27 76  3
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               19                 88
  N1                9                 27
  N2               23                 76
  N3                2                  3
D37V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     11    0
  20Q GAIN WILD-TYPE   48    6
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               11                 48
  MX                0                  6
                    vv
clus                   I  II III  IV
  20Q GAIN MUTATED     3   9  11  38
  20Q GAIN WILD-TYPE  17  42  34 119
D37V7, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                  3                 17
  II                 9                 42
  III               11                 34
  IV                38                119
D37V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     26   43
  20Q GAIN WILD-TYPE   50  202
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                26                 50
  YES               43                202
D37V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q GAIN MUTATED                                            23
  20Q GAIN WILD-TYPE                                          61
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q GAIN MUTATED                                        9             18
  20Q GAIN WILD-TYPE                                     48             85
                    vv
clus                 LIFELONG NON-SMOKER
  20Q GAIN MUTATED                    17
  20Q GAIN WILD-TYPE                  49
D37V10, multiclass
                                             clus
vv                                            20Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               23
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                       17
                                             clus
vv                                            20Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      48
  CURRENT SMOKER                                              85
  LIFELONG NON-SMOKER                                         49
D37V11, continuous
D37V12, continuous

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED     6   3
  21Q GAIN WILD-TYPE 190 118
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                308 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 3                118 
$`21Q GAIN MUTATED`
TCGA-BB-4225 TCGA-CN-4727 TCGA-CR-6467 TCGA-CR-6478 TCGA-CR-7370 TCGA-CV-5432 
        4.60         6.38        58.42         6.02         3.42       129.21 
TCGA-CV-7414 TCGA-CV-7415 TCGA-HD-8314 
        0.46        22.85         1.45 

$`21Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 
       39.52        34.52        36.99        18.51        16.90        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36       135.29        17.16       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.81         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.46               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            129.21             210.94 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              6.02              14.33 
[1] "0.5 - 129.2 (6.0)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      2    7
  21Q GAIN WILD-TYPE   88  224
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                2                 88
  MALE                  7                224
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     0   1   1   3
  21Q GAIN WILD-TYPE  28  80  64 101
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                0                 28
  T2                1                 80
  T3                1                 64
  T4                3                101
                    vv
clus                  N0  N1  N2  N3
  21Q GAIN MUTATED     2   1   2   0
  21Q GAIN WILD-TYPE 105  35  97   5
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                2                105
  N1                1                 35
  N2                2                 97
  N3                0                  5
D38V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1    0
  21Q GAIN WILD-TYPE   58    6
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0                1                 58
  MX                0                  6
                    vv
clus                   I  II III  IV
  21Q GAIN MUTATED     0   0   2   3
  21Q GAIN WILD-TYPE  20  51  43 154
D38V7, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                  0                 20
  II                 0                 51
  III                2                 43
  IV                 3                154
D38V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      2    7
  21Q GAIN WILD-TYPE   74  238
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 2                 74
  YES                7                238
D38V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q GAIN MUTATED                                             6
  21Q GAIN WILD-TYPE                                          78
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q GAIN MUTATED                                        1              0
  21Q GAIN WILD-TYPE                                     56            103
                    vv
clus                 LIFELONG NON-SMOKER
  21Q GAIN MUTATED                     1
  21Q GAIN WILD-TYPE                  65
D38V10, multiclass
                                             clus
vv                                            21Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             0
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            21Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                             103
  LIFELONG NON-SMOKER                                         65
D38V11, continuous
D38V12, continuous

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    21  17
  22Q GAIN WILD-TYPE 175 104
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                38                279 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                17                104 
$`22Q GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-7269 TCGA-BB-7870 
       15.16         9.07         6.12         7.96         7.76        37.87 
TCGA-BB-8601 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6024 TCGA-CN-6994 TCGA-CQ-5326 
       20.52         4.70         6.61         7.36         3.91         2.93 
TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CR-6471 TCGA-CR-6474 TCGA-CR-6482 TCGA-CR-7370 
       10.42        32.88        39.52        18.51        11.34         3.42 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5970 
       12.89        29.82         7.10        35.41       108.33        13.35 
TCGA-CV-5978 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7178 
        7.07        26.43        11.24       126.12         1.84        71.21 
TCGA-CV-7245 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7424 TCGA-CV-7437 TCGA-DQ-5625 
       26.20        47.97        35.54        14.86        16.60        34.78 
TCGA-DQ-5629 TCGA-DQ-7589 
       16.96        18.90 

$`22Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.90         5.88        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
       14.79         2.07        12.99         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.87        23.61        20.98        14.04        14.33        71.05 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6017 
       13.58         9.01         6.81         7.50         5.06         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         2.73         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 
        1.51        48.16        39.68        21.50        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        11.21         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        34.52        36.99        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 
       30.02        31.10        29.85        29.52        30.54         5.13 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       33.11        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       21.86       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 
        8.38        28.31         2.50         4.14        64.80       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87         2.10        36.13        18.41        58.06 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       25.02        25.94         0.07        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        7.13       142.49         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       37.78        15.68        18.02        14.04        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              1.84               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            126.12             210.94 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             15.01              14.04 
[1] "1.8 - 126.1 (15.0)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      8   31
  22Q GAIN WILD-TYPE   82  200
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                8                 82
  MALE                 31                200
                    vv
clus                 T1 T2 T3 T4
  22Q GAIN MUTATED    2 10  8 12
  22Q GAIN WILD-TYPE 26 71 57 92
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                2                 26
  T2               10                 71
  T3                8                 57
  T4               12                 92
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED     7   6  13   1
  22Q GAIN WILD-TYPE 100  30  86   4
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0                7                100
  N1                6                 30
  N2               13                 86
  N3                1                  4
D39V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      7    1
  22Q GAIN WILD-TYPE   52    5
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0                7                 52
  MX                1                  5
                    vv
clus                   I  II III  IV
  22Q GAIN MUTATED     1   4   6  20
  22Q GAIN WILD-TYPE  19  47  39 137
D39V7, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                  1                 19
  II                 4                 47
  III                6                 39
  IV                20                137
D39V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      9   30
  22Q GAIN WILD-TYPE   67  215
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 9                 67
  YES               30                215
D39V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q GAIN MUTATED                                            14
  22Q GAIN WILD-TYPE                                          70
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q GAIN MUTATED                                        6             14
  22Q GAIN WILD-TYPE                                     51             89
                    vv
clus                 LIFELONG NON-SMOKER
  22Q GAIN MUTATED                     5
  22Q GAIN WILD-TYPE                  61
D39V10, multiclass
                                             clus
vv                                            22Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               14
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     6
  CURRENT SMOKER                                            14
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            22Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 70
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      51
  CURRENT SMOKER                                              89
  LIFELONG NON-SMOKER                                         61
D39V11, continuous
D39V12, continuous

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     8  12
  XQ GAIN WILD-TYPE 188 109
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               297 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               12               109 
$`XQ GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6872 TCGA-BB-4225 TCGA-BB-4227 TCGA-CV-5970 
       37.28         8.15        12.99         4.60         4.37        13.35 
TCGA-CV-5977 TCGA-CV-6936 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-7102 TCGA-CV-7178 
       33.11         5.46        30.05         8.38         1.84        71.21 
TCGA-CV-7254 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 
       47.97        17.82        22.85        16.60         7.76        10.68 
TCGA-DQ-5629 TCGA-DQ-7592 
       16.96         9.83 

$`XQ GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         9.07         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79         2.07         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        6.12        95.05         9.04        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         9.70        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       58.06        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73         7.13       142.49         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       10.55        27.22        13.25         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 
        5.00         5.03         4.18         3.45         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       34.78        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
       11.84        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             1.84              0.07 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            71.21            210.94 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            13.17             14.33 
[1] "1.8 - 71.2 (13.2)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" 
[1] "hr=" "2"  
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      3   17
  XQ GAIN WILD-TYPE   87  214
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               3                87
  MALE                17               214
                   vv
clus                T1 T2 T3 T4
  XQ GAIN MUTATED    1  2  5  8
  XQ GAIN WILD-TYPE 27 79 60 96
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               1                27
  T2               2                79
  T3               5                60
  T4               8                96
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED     3   1   9   1
  XQ GAIN WILD-TYPE 104  35  90   4
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0               3               104
  N1               1                35
  N2               9                90
  N3               1                 4
D40V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      1    0
  XQ GAIN WILD-TYPE   58    6
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0               1                58
  MX               0                 6
                   vv
clus                  I  II III  IV
  XQ GAIN MUTATED     1   2   2  11
  XQ GAIN WILD-TYPE  19  49  43 146
D40V7, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 1                19
  II                2                49
  III               2                43
  IV               11               146
D40V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      4   16
  XQ GAIN WILD-TYPE   72  229
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                4                72
  YES              16               229
D40V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ GAIN MUTATED                                             7
  XQ GAIN WILD-TYPE                                          77
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ GAIN MUTATED                                        4              5
  XQ GAIN WILD-TYPE                                     53             98
                   vv
clus                LIFELONG NON-SMOKER
  XQ GAIN MUTATED                     3
  XQ GAIN WILD-TYPE                  63
D40V10, multiclass
                                             clus
vv                                            XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                53
  CURRENT SMOKER                                            5                98
  LIFELONG NON-SMOKER                                       3                63
D40V11, continuous
D40V12, continuous

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED     9   7
  1P LOSS WILD-TYPE 187 114
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               301 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                7               114 
$`1P LOSS MUTATED`
TCGA-BA-6871 TCGA-CN-5360 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6992 
        2.07        28.47         4.70         9.07         7.36         2.73 
TCGA-CN-6997 TCGA-CQ-6225 TCGA-CR-7370 TCGA-CR-7371 TCGA-CV-5434 TCGA-CV-5440 
        3.29        13.25         3.42         3.06       108.33        89.82 
TCGA-CV-6935 TCGA-CV-6962 TCGA-CV-7424 TCGA-D6-6516 
        9.70         4.14        14.86        10.68 

$`1P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
        9.17         9.50         5.69        12.39         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         7.50         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        1.48         4.41         3.19         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         3.91         3.68         3.75         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       47.34        40.90        35.84        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             2.07              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           108.33            210.94 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            8.215            14.960 
[1] "2.1 - 108.3 (8.2)"  "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"1P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   13
  1P LOSS WILD-TYPE   87  218
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               3                87
  MALE                13               218
                   vv
clus                T1 T2 T3 T4
  1P LOSS MUTATED    1  0  7  5
  1P LOSS WILD-TYPE 27 81 58 99
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               1                27
  T2               0                81
  T3               7                58
  T4               5                99
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED     3   1   8   0
  1P LOSS WILD-TYPE 104  35  91   5
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0               3               104
  N1               1                35
  N2               8                91
  N3               0                 5
D41V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3    0
  1P LOSS WILD-TYPE   56    6
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0               3                56
  MX               0                 6
                   vv
clus                  I  II III  IV
  1P LOSS MUTATED     1   0   2  10
  1P LOSS WILD-TYPE  19  51  43 147
D41V7, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                 1                19
  II                0                51
  III               2                43
  IV               10               147
D41V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      6   10
  1P LOSS WILD-TYPE   70  235
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                6                70
  YES              10               235
D41V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P LOSS MUTATED                                             7
  1P LOSS WILD-TYPE                                          77
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P LOSS MUTATED                                        2              7
  1P LOSS WILD-TYPE                                     55             96
                   vv
clus                LIFELONG NON-SMOKER
  1P LOSS MUTATED                     0
  1P LOSS WILD-TYPE                  66
D41V10, multiclass
                                             clus
vv                                            1P LOSS MUTATED 1P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                55
  CURRENT SMOKER                                            7                96
  LIFELONG NON-SMOKER                                       0                66
D41V11, continuous
D41V12, continuous

Clustering(42) Variable = 2p loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     5   1
  2P LOSS WILD-TYPE 191 120
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6               311 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1               120 
$`2P LOSS MUTATED`
TCGA-BB-7861 TCGA-BB-7864 TCGA-CN-6011 TCGA-CQ-6218 TCGA-CV-5973 TCGA-CV-7432 
       10.19        23.61         7.50        28.60        57.07        84.49 

$`2P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.60         4.37        18.31        17.59        13.87        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21         4.21        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90         3.48        16.27        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 
        5.00         5.03         4.18         3.45         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             7.50              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            84.49            210.94 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           26.105            14.040 
[1] "7.5 - 84.5 (26.1)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"2P LOSS WILD-TYPE" 
[1] "hr=" "3.2"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    4
  2P LOSS WILD-TYPE   88  227
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               2                88
  MALE                 4               227
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     1   2   2   1
  2P LOSS WILD-TYPE  27  79  63 103
D42V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               1                27
  T2               2                79
  T3               2                63
  T4               1               103
                   vv
clus                 N0  N1  N2  N3
  2P LOSS MUTATED     3   1   2   0
  2P LOSS WILD-TYPE 104  35  97   5
D42V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               3               104
  N1               1                35
  N2               2                97
  N3               0                 5
D42V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      0    0
  2P LOSS WILD-TYPE   59    6
                   vv
clus                  I  II III  IV
  2P LOSS MUTATED     0   1   2   3
  2P LOSS WILD-TYPE  20  50  43 154
D42V7, multiclass
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  I                 0                20
  II                1                50
  III               2                43
  IV                3               154
D42V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    4
  2P LOSS WILD-TYPE   74  241
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                2                74
  YES               4               241
D42V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2P LOSS MUTATED                                             4
  2P LOSS WILD-TYPE                                          80
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2P LOSS MUTATED                                        0              1
  2P LOSS WILD-TYPE                                     57            102
                   vv
clus                LIFELONG NON-SMOKER
  2P LOSS MUTATED                     1
  2P LOSS WILD-TYPE                  65
D42V10, multiclass
                                             clus
vv                                            2P LOSS MUTATED 2P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                57
  CURRENT SMOKER                                            1               102
  LIFELONG NON-SMOKER                                       1                65
D42V11, continuous
D42V12, continuous

Clustering(43) Variable = 2q loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED     9   1
  2Q LOSS WILD-TYPE 187 120
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10               307 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1               120 
$`2Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-6871 TCGA-BB-7861 TCGA-BB-7864 TCGA-CR-6472 TCGA-CR-7371 
       27.78         2.07        10.19        23.61        34.52         3.06 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5973 TCGA-DQ-7593 
        5.92        29.92        57.07        12.13 

$`2Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       18.31        17.59        13.87        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.42        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 
       30.54         7.10         5.13        35.41        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.45         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             2.07              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            57.07            210.94 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            17.87             14.04 
[1] "2.1 - 57.1 (17.9)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" 
[1] "hr=" "3.5"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      3    7
  2Q LOSS WILD-TYPE   87  224
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               3                87
  MALE                 7               224
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     1   1   3   1
  2Q LOSS WILD-TYPE  27  80  62 103
D43V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               1                27
  T2               1                80
  T3               3                62
  T4               1               103
                   vv
clus                 N0  N1  N2  N3
  2Q LOSS MUTATED     2   2   2   0
  2Q LOSS WILD-TYPE 105  34  97   5
D43V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0               2               105
  N1               2                34
  N2               2                97
  N3               0                 5
D43V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      3    0
  2Q LOSS WILD-TYPE   56    6
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0               3                56
  MX               0                 6
                   vv
clus                  I  II III  IV
  2Q LOSS MUTATED     0   0   3   3
  2Q LOSS WILD-TYPE  20  51  42 154
D43V7, multiclass
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  I                 0                20
  II                0                51
  III               3                42
  IV                3               154
D43V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1    9
  2Q LOSS WILD-TYPE   75  236
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                1                75
  YES               9               236
D43V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q LOSS MUTATED                                             2
  2Q LOSS WILD-TYPE                                          82
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q LOSS MUTATED                                        0              5
  2Q LOSS WILD-TYPE                                     57             98
                   vv
clus                LIFELONG NON-SMOKER
  2Q LOSS MUTATED                     2
  2Q LOSS WILD-TYPE                  64
D43V10, multiclass
                                             clus
vv                                            2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                57
  CURRENT SMOKER                                            5                98
  LIFELONG NON-SMOKER                                       2                64
D43V11, continuous
D43V12, continuous

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    67  52
  3P LOSS WILD-TYPE 129  69
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              119               198 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               52                69 
$`3P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6869 
       15.16        13.64         9.07         6.12        53.75         8.02 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7870 
        2.07        12.99         7.76         9.04        17.59        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-4737 
       14.04        14.33        20.52        10.19        12.13         7.89 
TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 
        9.17        28.47         8.28        16.21        11.54        11.57 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 
       13.58         7.50         4.70         2.73         3.68         3.29 
TCGA-CN-6998 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 
        1.51         2.93        29.46        10.42        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5250 
       32.88        45.27        33.07        84.23        11.77        26.24 
TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7364 
       36.99        11.90        11.34        11.51         9.27        47.18 
TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 
        3.42         0.99        19.92        27.02        29.82         5.13 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 
       29.92       135.29       129.21       108.33        47.28        17.95 
TCGA-CV-5440 TCGA-CV-5970 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       89.82        13.35        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6941 TCGA-CV-6945 
        5.88         2.14         9.70         5.46        11.24        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 
       42.35        30.05        65.82         7.13        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
        4.14       111.12        18.81         7.99         9.01         1.84 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 
       12.89        21.76        36.00        26.20         4.96         2.10 
TCGA-CV-7263 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7423 TCGA-CV-7424 
       18.41         9.67         0.46        25.94       100.54        14.86 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6516 
       54.90        16.27        84.49        10.39         7.76        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-8568 TCGA-DQ-5629 TCGA-DQ-5631 
        8.22         7.82         5.00         3.45        16.96        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-F7-8298 
       14.04        18.90        11.84         9.83         1.15         0.46 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8635 TCGA-IQ-7630 
        0.07         0.16         1.81         0.99         5.26 

$`3P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6873 
        5.88         7.96        57.44         5.00        14.79         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 
       13.87        23.61        20.98        71.05         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       17.16        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-5369 
       13.05         9.50         5.69        12.39        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        8.52         9.01         6.81         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CQ-5323 
        7.36         1.38         5.82         3.91         3.75        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 
       39.68        21.50        38.89        27.65        33.80        11.21 
TCGA-CQ-5334 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
        4.21        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5248 
       26.76        48.03        16.70        22.78        29.59        54.64 
TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       37.87        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       16.90         6.02        10.22        11.64         7.66        12.46 
TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       15.75        39.12        47.34        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 
       24.95        29.23        31.96        34.06        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 
       29.52        30.54         7.10         5.92        35.41        48.36 
TCGA-CV-5431 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.16        19.20        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 
       17.06        17.75        57.07        33.11        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
       90.08        20.52         4.70        21.86        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 
       19.79        15.06         6.08        53.92        10.98         8.38 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7178 
       64.80       126.12        12.66         5.23        52.31        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       10.75       114.94        56.68         4.73        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7415 
       58.06        35.54        17.82       210.94        89.33        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
       25.02         0.07        34.09        56.48       156.49         3.48 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 
       10.55        27.22        13.25         2.53         5.03         4.18 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7593 
        4.18        37.78        34.78        15.68        21.73        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 
       12.10        10.65         0.43         0.99         1.87         0.82 
TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.02         1.45         0.99        22.75         4.01         3.72 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.07              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           135.29            210.94 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            11.90             16.98 
[1] "0.1 - 135.3 (11.9)" "0.1 - 210.9 (17.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"3P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     24   97
  3P LOSS WILD-TYPE   66  134
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              24                66
  MALE                97               134
                   vv
clus                T1 T2 T3 T4
  3P LOSS MUTATED    8 26 29 37
  3P LOSS WILD-TYPE 20 55 36 67
D44V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1               8                20
  T2              26                55
  T3              29                36
  T4              37                67
                   vv
clus                N0 N1 N2 N3
  3P LOSS MUTATED   39  9 40  4
  3P LOSS WILD-TYPE 68 27 59  1
D44V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              39                68
  N1               9                27
  N2              40                59
  N3               4                 1
D44V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      9    3
  3P LOSS WILD-TYPE   50    3
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0               9                50
  MX               3                 3
                   vv
clus                 I II III IV
  3P LOSS MUTATED    7 15  17 60
  3P LOSS WILD-TYPE 13 36  28 97
D44V7, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                 7                13
  II               15                36
  III              17                28
  IV               60                97
D44V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     29   92
  3P LOSS WILD-TYPE   47  153
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               29                47
  YES              92               153
D44V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P LOSS MUTATED                                            37
  3P LOSS WILD-TYPE                                          47
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P LOSS MUTATED                                       18             44
  3P LOSS WILD-TYPE                                     39             59
                   vv
clus                LIFELONG NON-SMOKER
  3P LOSS MUTATED                    19
  3P LOSS WILD-TYPE                  47
D44V10, multiclass
                                             clus
vv                                            3P LOSS MUTATED 3P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              37                47
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   18                39
  CURRENT SMOKER                                           44                59
  LIFELONG NON-SMOKER                                      19                47
D44V11, continuous
D44V12, continuous

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    11  10
  3Q LOSS WILD-TYPE 185 111
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               296 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               10               111 
$`3Q LOSS MUTATED`
TCGA-BA-5555 TCGA-BB-7862 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-5365 
        6.12        17.59        37.87        10.19        12.13        11.54 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CR-6493 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7390 
        3.68         3.29         9.27         0.99        19.92        29.82 
TCGA-CR-7398 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5976 TCGA-CV-6441 
        5.13       108.33        47.28        17.95        48.59         5.88 
TCGA-CV-7252 TCGA-CV-7428 TCGA-HD-7753 
        4.96        54.90         0.16 

$`3Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.31        10.19        13.87        23.61        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47         8.28        16.21        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.91         3.75         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       12.46        11.51        15.75        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96        34.06        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 
      135.29        17.16       129.21        19.20        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 
      100.54        14.86        56.48       156.49         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
        0.43         0.99         1.87         0.07         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           108.33            210.94 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            11.54             14.33 
[1] "0.2 - 108.3 (11.5)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      3   18
  3Q LOSS WILD-TYPE   87  213
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               3                87
  MALE                18               213
                   vv
clus                T1 T2 T3 T4
  3Q LOSS MUTATED    1  3  7  9
  3Q LOSS WILD-TYPE 27 78 58 95
D45V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               1                27
  T2               3                78
  T3               7                58
  T4               9                95
                   vv
clus                N0 N1 N2 N3
  3Q LOSS MUTATED    9  0 10  1
  3Q LOSS WILD-TYPE 98 36 89  4
D45V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0               9                98
  N1               0                36
  N2              10                89
  N3               1                 4
D45V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      1    0
  3Q LOSS WILD-TYPE   58    6
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0               1                58
  MX               0                 6
                   vv
clus                  I  II III  IV
  3Q LOSS MUTATED     1   2   1  16
  3Q LOSS WILD-TYPE  19  49  44 141
D45V7, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                 1                19
  II                2                49
  III               1                44
  IV               16               141
D45V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      6   15
  3Q LOSS WILD-TYPE   70  230
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                6                70
  YES              15               230
D45V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q LOSS MUTATED                                             6
  3Q LOSS WILD-TYPE                                          78
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q LOSS MUTATED                                        2              9
  3Q LOSS WILD-TYPE                                     55             94
                   vv
clus                LIFELONG NON-SMOKER
  3Q LOSS MUTATED                     2
  3Q LOSS WILD-TYPE                  64
D45V10, multiclass
                                             clus
vv                                            3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                55
  CURRENT SMOKER                                            9                94
  LIFELONG NON-SMOKER                                       2                64
D45V11, continuous
D45V12, continuous

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    42  34
  4P LOSS WILD-TYPE 154  87
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               76               241 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               34                87 
$`4P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5555 
       15.16        13.64        37.28         9.07         8.15         6.12 
TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-7861 TCGA-BB-7871 TCGA-BB-8601 
        2.07        95.05         9.04        10.19        14.04        20.52 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-5360 
       13.55        10.19         4.67        11.28        12.13        28.47 
TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6021 
       16.21         9.01         6.81         7.50         4.70         9.07 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6220 TCGA-CQ-6225 
        2.73         3.68         3.29        48.16        32.35        13.25 
TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       54.64        34.52         7.66        35.84         3.42         3.06 
TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5434 
        0.99        27.02        29.82         5.13        48.36       108.33 
TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       47.28        89.82         5.88        90.08         2.14         9.70 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 
       26.43        11.24        42.35        15.06        30.05         7.13 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7261 
        2.50         4.14       111.12         5.23        52.31        36.13 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-7438 
        9.67        22.85        25.94        16.27       142.49         6.38 
TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6516 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-8298 
       10.39        27.22        10.68        16.96        18.90         0.46 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.16         1.02         1.81         1.45 

$`4P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 
        9.30         6.25        27.78        57.90         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        3.72         7.76         6.12         4.60         4.37        18.31 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 
       17.59        13.87        23.61        20.98        37.87        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
       71.05         6.31         6.38        10.68         5.46        12.59 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
       13.58         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.91         3.75         1.51        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
        4.21        28.60        32.88        34.75        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        11.77        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       58.42        50.01        39.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 
        6.02        11.90        10.22        11.34        11.64        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       40.90        24.95        29.23        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 
       26.17        17.13        32.78        47.01        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 
       35.41        29.92       135.29        17.16       129.21        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6937 
       43.23        40.96        13.32        24.43         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 
        4.70        21.86       126.08        19.79        12.03         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 
       53.92        65.82        10.98         8.38        28.31        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
      126.12        18.81        12.66         7.99         9.01         1.84 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        25.02         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
        7.13        16.60        21.99        10.55         7.76        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        3.45         4.18        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
       10.65         1.15         0.43         0.99         1.87         0.07 
TCGA-HD-7754 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.82         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.16              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           142.49            210.94 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            11.26             15.68 
[1] "0.2 - 142.5 (11.3)" "0.1 - 210.9 (15.7)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     16   61
  4P LOSS WILD-TYPE   74  170
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              16                74
  MALE                61               170
                   vv
clus                T1 T2 T3 T4
  4P LOSS MUTATED    8 13 20 23
  4P LOSS WILD-TYPE 20 68 45 81
D46V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1               8                20
  T2              13                68
  T3              20                45
  T4              23                81
                   vv
clus                N0 N1 N2 N3
  4P LOSS MUTATED   23  7 30  1
  4P LOSS WILD-TYPE 84 29 69  4
D46V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              23                84
  N1               7                29
  N2              30                69
  N3               1                 4
D46V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      9    2
  4P LOSS WILD-TYPE   50    4
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0               9                50
  MX               2                 4
                   vv
clus                  I  II III  IV
  4P LOSS MUTATED     7   6  10  41
  4P LOSS WILD-TYPE  13  45  35 116
D46V7, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                 7                13
  II                6                45
  III              10                35
  IV               41               116
D46V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     17   60
  4P LOSS WILD-TYPE   59  185
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               17                59
  YES              60               185
D46V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P LOSS MUTATED                                            24
  4P LOSS WILD-TYPE                                          60
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P LOSS MUTATED                                        5             35
  4P LOSS WILD-TYPE                                     52             68
                   vv
clus                LIFELONG NON-SMOKER
  4P LOSS MUTATED                    11
  4P LOSS WILD-TYPE                  55
D46V10, multiclass
                                             clus
vv                                            4P LOSS MUTATED 4P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              24                60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                52
  CURRENT SMOKER                                           35                68
  LIFELONG NON-SMOKER                                      11                55
D46V11, continuous
D46V12, continuous

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    30  20
  4Q LOSS WILD-TYPE 166 101
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               267 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               20               101 
$`4Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-5555 TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 
        9.07         6.12         4.37        37.87        14.04        20.52 
TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 
       10.19        12.13        28.47         6.81         4.70         9.07 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CR-5248 TCGA-CR-6472 
        3.29        48.16        32.35        13.25        54.64        34.52 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7398 
       11.64         7.66         3.42         3.06         0.99         5.13 
TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-6003 
       48.36       108.33        47.28        17.95        89.82        40.96 
TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6962 TCGA-CV-7091 
        5.88         9.70        65.82         7.13         4.14       111.12 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7261 TCGA-CV-7413 TCGA-CV-7418 
        5.23        52.31        12.89        36.13         9.67        25.94 
TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7086 TCGA-CX-7219 TCGA-DQ-5629 
       16.27       142.49         6.38         7.76        27.22        16.96 
TCGA-DQ-7589 TCGA-DQ-7592 
       18.90         9.83 

$`4Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        7.76         6.12        95.05         9.04         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 
       10.19        17.59        13.87        23.61        20.98        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       71.05         6.31        13.55         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
        5.46        11.28        12.59        17.16        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        9.50         5.69        12.39         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 
        2.73         3.91         3.68         3.75         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        28.60        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 
       37.87        26.24        58.42        50.01        39.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       47.34        40.90        35.84        24.95        29.23        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 
      135.29        17.16       129.21        19.20        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        33.11         7.07        43.23        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 
       15.06        30.05         6.08        53.92        10.98         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
       28.31         2.50        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        7.99         9.01         1.84        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97         2.10        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
      210.94        89.33         0.46        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 
        3.48        84.49        19.73         7.13        16.60        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
       37.78        34.78        15.68        18.02        14.04        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
       11.84        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.99              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           142.49            210.94 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            13.07             14.33 
[1] "1.0 - 142.5 (13.1)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     13   37
  4Q LOSS WILD-TYPE   77  194
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              13                77
  MALE                37               194
                   vv
clus                T1 T2 T3 T4
  4Q LOSS MUTATED    4  7 14 15
  4Q LOSS WILD-TYPE 24 74 51 89
D47V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1               4                24
  T2               7                74
  T3              14                51
  T4              15                89
                   vv
clus                N0 N1 N2 N3
  4Q LOSS MUTATED   13  5 18  0
  4Q LOSS WILD-TYPE 94 31 81  5
D47V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              13                94
  N1               5                31
  N2              18                81
  N3               0                 5
D47V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      4    1
  4Q LOSS WILD-TYPE   55    5
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0               4                55
  MX               1                 5
                   vv
clus                  I  II III  IV
  4Q LOSS MUTATED     4   4   8  24
  4Q LOSS WILD-TYPE  16  47  37 133
D47V7, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                 4                16
  II                4                47
  III               8                37
  IV               24               133
D47V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     13   37
  4Q LOSS WILD-TYPE   63  208
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               13                63
  YES              37               208
D47V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q LOSS MUTATED                                            15
  4Q LOSS WILD-TYPE                                          69
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q LOSS MUTATED                                        5             19
  4Q LOSS WILD-TYPE                                     52             84
                   vv
clus                LIFELONG NON-SMOKER
  4Q LOSS MUTATED                     9
  4Q LOSS WILD-TYPE                  57
D47V10, multiclass
                                             clus
vv                                            4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15                69
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                52
  CURRENT SMOKER                                           19                84
  LIFELONG NON-SMOKER                                       9                57
D47V11, continuous
D47V12, continuous

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     4   4
  5P LOSS WILD-TYPE 192 117
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8               309 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                4               117 
$`5P LOSS MUTATED`
TCGA-BB-7871 TCGA-CR-7364 TCGA-CV-5432 TCGA-CV-6940 TCGA-CV-6951 TCGA-CV-6962 
       14.04        47.18       129.21        26.43        30.05         4.14 
TCGA-CV-7242 TCGA-CV-7414 
       36.00         0.46 

$`5P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       23.61        20.98        37.87        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
        7.66        12.46        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 
      126.08        19.79        12.03        42.35        15.06         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.46              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           129.21            210.94 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            28.24             13.87 
[1] "0.5 - 129.2 (28.2)" "0.1 - 210.9 (13.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"5P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3    5
  5P LOSS WILD-TYPE   87  226
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               3                87
  MALE                 5               226
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED     0   2   2   4
  5P LOSS WILD-TYPE  28  79  63 100
D48V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               0                28
  T2               2                79
  T3               2                63
  T4               4               100
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED     3   1   3   0
  5P LOSS WILD-TYPE 104  35  96   5
D48V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0               3               104
  N1               1                35
  N2               3                96
  N3               0                 5
D48V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      1    0
  5P LOSS WILD-TYPE   58    6
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0               1                58
  MX               0                 6
                   vv
clus                  I  II III  IV
  5P LOSS MUTATED     0   1   3   4
  5P LOSS WILD-TYPE  20  50  42 153
D48V7, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                 0                20
  II                1                50
  III               3                42
  IV                4               153
D48V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0    8
  5P LOSS WILD-TYPE   76  237
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                76
  YES               8               237
D48V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P LOSS MUTATED                                             3
  5P LOSS WILD-TYPE                                          81
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P LOSS MUTATED                                        2              3
  5P LOSS WILD-TYPE                                     55            100
                   vv
clus                LIFELONG NON-SMOKER
  5P LOSS MUTATED                     0
  5P LOSS WILD-TYPE                  66
D48V10, multiclass
                                             clus
vv                                            5P LOSS MUTATED 5P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                55
  CURRENT SMOKER                                            3               100
  LIFELONG NON-SMOKER                                       0                66
D48V11, continuous
D48V12, continuous

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    42  19
  5Q LOSS WILD-TYPE 154 102
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               61               256 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               19               102 
$`5Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7870 
       15.16         9.07         6.12         7.76         9.04        37.87 
TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4737 
       14.04        20.52        10.19         6.38        12.59         7.89 
TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6024 TCGA-CN-6992 TCGA-CQ-5332 
       28.47         6.81         4.70         7.36         2.73        10.42 
TCGA-CQ-7065 TCGA-CR-5247 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 
       33.07        11.77         9.27        47.18        39.12        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 
       35.84         3.42         3.06        29.82         5.13         5.92 
TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5979 TCGA-CV-6003 
      129.21        89.82        87.55        57.07        43.23        40.96 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 
       90.08        26.43        30.05         8.38        28.31         4.14 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7103 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7261 
      111.12        18.81        52.31        36.00        31.33        36.13 
TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7424 TCGA-CX-7082 TCGA-CX-7086 
       35.54         0.46         0.07        14.86        10.39         7.76 
TCGA-D6-6823 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
        7.82        18.02         9.83        12.10        10.65         1.15 
TCGA-HD-7753 
        0.16 

$`5Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 
        8.02        14.79         2.07        12.99         3.72         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
       95.05         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 
       13.87        23.61        20.98        14.33        71.05         6.31 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
       13.55         4.67        10.68         5.46        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       13.58         9.01         7.50         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 
       14.96        26.76        48.03        45.27        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       29.59        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7372 TCGA-CR-7373 
       12.46        11.51        15.75        47.34        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 
       29.85        29.52        30.54         7.10        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.36       135.29        17.16       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       17.95        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 
       17.75        48.59        33.11         7.07        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
        2.50        64.80       126.12        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23         1.84        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        58.06        17.82       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       22.85        25.02        25.94        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        21.99        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25        10.68         8.22         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       16.96        15.68        14.04        18.90        21.73        11.84 
TCGA-DQ-7593 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
       12.13         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           129.21            210.94 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            12.59             14.33 
[1] "0.1 - 129.2 (12.6)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     13   48
  5Q LOSS WILD-TYPE   77  183
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              13                77
  MALE                48               183
                   vv
clus                T1 T2 T3 T4
  5Q LOSS MUTATED    2 17 16 19
  5Q LOSS WILD-TYPE 26 64 49 85
D49V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1               2                26
  T2              17                64
  T3              16                49
  T4              19                85
                   vv
clus                N0 N1 N2 N3
  5Q LOSS MUTATED   20 10 21  0
  5Q LOSS WILD-TYPE 87 26 78  5
D49V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              20                87
  N1              10                26
  N2              21                78
  N3               0                 5
D49V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     10    1
  5Q LOSS WILD-TYPE   49    5
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              10                49
  MX               1                 5
                   vv
clus                  I  II III  IV
  5Q LOSS MUTATED     2   7  14  31
  5Q LOSS WILD-TYPE  18  44  31 126
D49V7, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                 2                18
  II                7                44
  III              14                31
  IV               31               126
D49V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     15   46
  5Q LOSS WILD-TYPE   61  199
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               15                61
  YES              46               199
D49V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q LOSS MUTATED                                            18
  5Q LOSS WILD-TYPE                                          66
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q LOSS MUTATED                                        5             26
  5Q LOSS WILD-TYPE                                     52             77
                   vv
clus                LIFELONG NON-SMOKER
  5Q LOSS MUTATED                    10
  5Q LOSS WILD-TYPE                  56
D49V10, multiclass
                                             clus
vv                                            5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              18                66
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                52
  CURRENT SMOKER                                           26                77
  LIFELONG NON-SMOKER                                      10                56
D49V11, continuous
D49V12, continuous

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    11   8
  6P LOSS WILD-TYPE 185 113
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               298 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                8               113 
$`6P LOSS MUTATED`
TCGA-BA-5152 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4735 TCGA-CN-6010 TCGA-CN-6988 
       27.78         4.60        17.59        12.13         6.81         1.38 
TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CR-7371 TCGA-CR-7399 TCGA-CV-5434 
        3.91         3.29        10.42         3.06         5.92       108.33 
TCGA-CV-5436 TCGA-CV-6441 TCGA-CV-6960 TCGA-CV-7418 TCGA-DQ-5624 TCGA-DQ-7588 
       19.20         5.88        28.31        25.94        37.78        14.04 
TCGA-DQ-7591 
       11.84 

$`6P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 
       11.57        12.49         8.52        13.58         9.01         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 
        3.19         9.07         6.61         6.18         7.36         5.82 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.68         3.75         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.42        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 
       29.92        48.36       135.29        17.16       129.21        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        40.96        13.32        24.43        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
        4.18        34.78        16.96        15.68        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             1.38              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           108.33            210.94 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            11.84             14.56 
[1] "1.4 - 108.3 (11.8)" "0.1 - 210.9 (14.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"6P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3   16
  6P LOSS WILD-TYPE   87  215
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               3                87
  MALE                16               215
                   vv
clus                T1 T2 T3 T4
  6P LOSS MUTATED    0  0  9  6
  6P LOSS WILD-TYPE 28 81 56 98
D50V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               0                28
  T2               0                81
  T3               9                56
  T4               6                98
                   vv
clus                 N0  N1  N2  N3
  6P LOSS MUTATED     5   1   9   0
  6P LOSS WILD-TYPE 102  35  90   5
D50V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0               5               102
  N1               1                35
  N2               9                90
  N3               0                 5
D50V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3    0
  6P LOSS WILD-TYPE   56    6
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0               3                56
  MX               0                 6
                   vv
clus                  I  II III  IV
  6P LOSS MUTATED     0   0   4  11
  6P LOSS WILD-TYPE  20  51  41 146
D50V7, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                 0                20
  II                0                51
  III               4                41
  IV               11               146
D50V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      6   13
  6P LOSS WILD-TYPE   70  232
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                6                70
  YES              13               232
D50V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P LOSS MUTATED                                             9
  6P LOSS WILD-TYPE                                          75
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P LOSS MUTATED                                        3              5
  6P LOSS WILD-TYPE                                     54             98
                   vv
clus                LIFELONG NON-SMOKER
  6P LOSS MUTATED                     1
  6P LOSS WILD-TYPE                  65
D50V10, multiclass
                                             clus
vv                                            6P LOSS MUTATED 6P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                75
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                54
  CURRENT SMOKER                                            5                98
  LIFELONG NON-SMOKER                                       1                65
D50V11, continuous
D50V12, continuous

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    13   8
  6Q LOSS WILD-TYPE 183 113
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               296 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                8               113 
$`6Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5555 TCGA-BB-4225 TCGA-CN-6010 TCGA-CN-6988 TCGA-CN-6994 
       27.78         6.12         4.60         6.81         1.38         3.91 
TCGA-CR-5248 TCGA-CR-6473 TCGA-CR-6491 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5434 
       54.64        36.99        11.51         5.92        48.36       108.33 
TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-7253 TCGA-CV-7416 TCGA-DQ-5624 
        5.88        53.92        65.82        11.87        25.02        37.78 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       18.02        14.04        11.84 

$`6Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
        6.25        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        11.77        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 
       58.42        50.01        39.52        34.52        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       12.46        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 
       35.41        29.92       135.29        17.16       129.21        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 
       42.35        15.06        30.05         6.08        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 
       26.20        18.97        17.10        95.34         4.96        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 
       34.78        16.96        15.68        18.90        21.73         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             1.38              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           108.33            210.94 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           14.040            14.185 
[1] "1.4 - 108.3 (14.0)" "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      4   17
  6Q LOSS WILD-TYPE   86  214
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE               4                86
  MALE                17               214
                   vv
clus                T1 T2 T3 T4
  6Q LOSS MUTATED    0  0  4  9
  6Q LOSS WILD-TYPE 28 81 61 95
D51V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1               0                28
  T2               0                81
  T3               4                61
  T4               9                95
                   vv
clus                 N0  N1  N2  N3
  6Q LOSS MUTATED     5   0   6   0
  6Q LOSS WILD-TYPE 102  36  93   5
D51V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0               5               102
  N1               0                36
  N2               6                93
  N3               0                 5
D51V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      2    0
  6Q LOSS WILD-TYPE   57    6
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0               2                57
  MX               0                 6
                   vv
clus                  I  II III  IV
  6Q LOSS MUTATED     0   0   2  11
  6Q LOSS WILD-TYPE  20  51  43 146
D51V7, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                 0                20
  II                0                51
  III               2                43
  IV               11               146
D51V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      5   16
  6Q LOSS WILD-TYPE   71  229
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                5                71
  YES              16               229
D51V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q LOSS MUTATED                                             7
  6Q LOSS WILD-TYPE                                          77
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q LOSS MUTATED                                        4              4
  6Q LOSS WILD-TYPE                                     53             99
                   vv
clus                LIFELONG NON-SMOKER
  6Q LOSS MUTATED                     4
  6Q LOSS WILD-TYPE                  62
D51V10, multiclass
                                             clus
vv                                            6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                53
  CURRENT SMOKER                                            4                99
  LIFELONG NON-SMOKER                                       4                62
D51V11, continuous
D51V12, continuous

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     3   2
  7P LOSS WILD-TYPE 193 119
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               312 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                2               119 
$`7P LOSS MUTATED`
TCGA-CR-6473 TCGA-CV-5435 TCGA-CV-7242 TCGA-CV-7430 TCGA-CX-7082 
       36.99        47.28        36.00        16.27        10.39 

$`7P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       23.61        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 
      135.29        17.16       129.21       108.33        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       10.75       114.94        56.68         4.73        47.47        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        21.99        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            10.39              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            47.28            210.94 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           36.000            13.955 
[1] "10.4 - 47.3 (36.0)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"7P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    4
  7P LOSS WILD-TYPE   89  227
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               1                89
  MALE                 4               227
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     0   2   0   2
  7P LOSS WILD-TYPE  28  79  65 102
D52V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               0                28
  T2               2                79
  T3               0                65
  T4               2               102
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED     2   0   2   0
  7P LOSS WILD-TYPE 105  36  97   5
D52V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0               2               105
  N1               0                36
  N2               2                97
  N3               0                 5
D52V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      0    0
  7P LOSS WILD-TYPE   59    6
                   vv
clus                  I  II III  IV
  7P LOSS MUTATED     0   1   0   3
  7P LOSS WILD-TYPE  20  50  45 154
D52V7, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                 0                20
  II                1                50
  III               0                45
  IV                3               154
D52V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    4
  7P LOSS WILD-TYPE   75  241
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                75
  YES               4               241
D52V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P LOSS MUTATED                                             4
  7P LOSS WILD-TYPE                                          80
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P LOSS MUTATED                                        1              0
  7P LOSS WILD-TYPE                                     56            103
                   vv
clus                LIFELONG NON-SMOKER
  7P LOSS MUTATED                     0
  7P LOSS WILD-TYPE                  66
D52V10, multiclass
                                             clus
vv                                            7P LOSS MUTATED 7P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                56
  CURRENT SMOKER                                            0               103
  LIFELONG NON-SMOKER                                       0                66
D52V11, continuous
D52V12, continuous

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     5   3
  7Q LOSS WILD-TYPE 191 118
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                8               309 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3               118 
$`7Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BB-4224 TCGA-CN-4731 TCGA-CR-7374 
       15.16        13.64        27.78         9.04        12.59         0.99 
TCGA-CV-6954 TCGA-CX-7082 
       65.82        10.39 

$`7Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        37.28         9.07         8.15         6.25        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
        4.67         6.38        10.68         5.46        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 
        3.42         3.06        24.95        29.23        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.99              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            65.82            210.94 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           13.115            14.330 
[1] "1.0 - 65.8 (13.1)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      2    6
  7Q LOSS WILD-TYPE   88  225
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               2                88
  MALE                 6               225
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     0   3   0   3
  7Q LOSS WILD-TYPE  28  78  65 101
D53V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               0                28
  T2               3                78
  T3               0                65
  T4               3               101
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED     1   0   4   0
  7Q LOSS WILD-TYPE 106  36  95   5
D53V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0               1               106
  N1               0                36
  N2               4                95
  N3               0                 5
D53V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      2    0
  7Q LOSS WILD-TYPE   57    6
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0               2                57
  MX               0                 6
                   vv
clus                  I  II III  IV
  7Q LOSS MUTATED     0   0   0   6
  7Q LOSS WILD-TYPE  20  51  45 151
D53V7, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 0                20
  II                0                51
  III               0                45
  IV                6               151
D53V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1    7
  7Q LOSS WILD-TYPE   75  238
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                75
  YES               7               238
D53V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q LOSS MUTATED                                             2
  7Q LOSS WILD-TYPE                                          82
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q LOSS MUTATED                                        1              3
  7Q LOSS WILD-TYPE                                     56            100
                   vv
clus                LIFELONG NON-SMOKER
  7Q LOSS MUTATED                     1
  7Q LOSS WILD-TYPE                  65
D53V10, multiclass
                                             clus
vv                                            7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                56
  CURRENT SMOKER                                            3               100
  LIFELONG NON-SMOKER                                       1                65
D53V11, continuous
D53V12, continuous

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    35  32
  8P LOSS WILD-TYPE 161  89
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               67               250 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               32                89 
$`8P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-7862 
       15.16        13.64         8.15         3.72         7.76        17.59 
TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5367 
       14.04        10.19         4.67        28.47         8.28        11.57 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6992 TCGA-CN-6996 
        8.52        13.58         7.50         5.06         2.73         3.75 
TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6225 TCGA-CQ-6228 
        3.29         2.93        10.42         4.21        13.25        14.96 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CR-6471 TCGA-CR-7364 TCGA-CR-7372 TCGA-CR-7373 
       48.03        45.27        39.52        47.18        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5434 TCGA-CV-5973 
        0.99        19.92        27.02         5.92       108.33        57.07 
TCGA-CV-6935 TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6960 
        9.70       126.08         6.08        65.82         7.13        28.31 
TCGA-CV-7090 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7247 TCGA-CV-7255 
      126.12         9.01         1.84        12.89        18.97         2.10 
TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7434 
       36.13        22.85         0.07       100.54       156.49         7.13 
TCGA-CV-7438 TCGA-D6-6517 TCGA-D6-6825 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5631 
        6.38         8.22         5.00        37.78        34.78        18.02 
TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-8298 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8635 
       18.90         9.83         0.46         1.87         0.16         0.99 
TCGA-IQ-7630 
        5.26 

$`8P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         9.07         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79         2.07        12.99         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.04         4.60         4.37        18.31        10.19        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       23.61        20.98        37.87        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
        6.31        13.55         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
        5.69        12.39        16.21        11.54        11.84        12.49 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01         6.81         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5323 
        1.38         5.82         3.91         3.68         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50        38.89        27.65        29.46        33.80 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
        4.21        26.76        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 
       35.84         3.42         3.06        31.96        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       84.39        64.73        17.06        13.35        17.75        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43        11.24        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 
       15.06        30.05        53.92        10.98         8.38         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        5.23        52.31        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 
       17.10        95.34         4.96        11.87        47.97        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
        0.46        25.02        25.94        34.09        14.86        56.48 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 
       54.90         3.48        16.27        84.49        19.73       142.49 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
       16.60        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 
       13.25        10.68         7.82         2.53         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7590 
        3.45         4.18        16.96        15.68        14.04        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 
       11.84        12.13        12.10        10.65         1.15         0.43 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.99         0.07         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         4.01         3.72 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.07 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           156.49            210.94 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           10.420            15.715 
[1] "0.1 - 156.5 (10.4)" "0.1 - 210.9 (15.7)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"8P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     21   47
  8P LOSS WILD-TYPE   69  184
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              21                69
  MALE                47               184
                   vv
clus                T1 T2 T3 T4
  8P LOSS MUTATED    9 10 21 20
  8P LOSS WILD-TYPE 19 71 44 84
D54V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1               9                19
  T2              10                71
  T3              21                44
  T4              20                84
                   vv
clus                N0 N1 N2 N3
  8P LOSS MUTATED   20 10 22  1
  8P LOSS WILD-TYPE 87 26 77  4
D54V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              20                87
  N1              10                26
  N2              22                77
  N3               1                 4
D54V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     12    3
  8P LOSS WILD-TYPE   47    3
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              12                47
  MX               3                 3
                   vv
clus                  I  II III  IV
  8P LOSS MUTATED     7   6  13  34
  8P LOSS WILD-TYPE  13  45  32 123
D54V7, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                 7                13
  II                6                45
  III              13                32
  IV               34               123
D54V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     17   51
  8P LOSS WILD-TYPE   59  194
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               17                59
  YES              51               194
D54V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P LOSS MUTATED                                            14
  8P LOSS WILD-TYPE                                          70
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P LOSS MUTATED                                       13             24
  8P LOSS WILD-TYPE                                     44             79
                   vv
clus                LIFELONG NON-SMOKER
  8P LOSS MUTATED                    15
  8P LOSS WILD-TYPE                  51
D54V10, multiclass
                                             clus
vv                                            8P LOSS MUTATED 8P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14                70
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   13                44
  CURRENT SMOKER                                           24                79
  LIFELONG NON-SMOKER                                      15                51
D54V11, continuous
D54V12, continuous

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     3   4
  8Q LOSS WILD-TYPE 193 117
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                7               310 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                4               117 
$`8Q LOSS MUTATED`
TCGA-BA-4076 TCGA-CN-5360 TCGA-CN-6011 TCGA-CV-6956 TCGA-CV-7100 TCGA-CV-7242 
       13.64        28.47         7.50         7.13         9.01        36.00 
TCGA-CV-7415 
       22.85 

$`8Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
        9.17         9.50         5.69        12.39         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 
       30.05         6.08        53.92        65.82        10.98         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       18.81        12.66         7.99         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             7.13              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            36.00            210.94 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           13.640            14.185 
[1] "7.1 - 36.0 (13.6)"  "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      1    6
  8Q LOSS WILD-TYPE   89  225
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               1                89
  MALE                 6               225
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     0   2   1   3
  8Q LOSS WILD-TYPE  28  79  64 101
D55V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               0                28
  T2               2                79
  T3               1                64
  T4               3               101
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED     3   2   1   0
  8Q LOSS WILD-TYPE 104  34  98   5
D55V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               3               104
  N1               2                34
  N2               1                98
  N3               0                 5
D55V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      1    0
  8Q LOSS WILD-TYPE   58    6
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               1                58
  MX               0                 6
                   vv
clus                  I  II III  IV
  8Q LOSS MUTATED     0   1   2   3
  8Q LOSS WILD-TYPE  20  50  43 154
D55V7, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 0                20
  II                1                50
  III               2                43
  IV                3               154
D55V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      2    5
  8Q LOSS WILD-TYPE   74  240
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                2                74
  YES               5               240
D55V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q LOSS MUTATED                                             1
  8Q LOSS WILD-TYPE                                          83
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q LOSS MUTATED                                        2              3
  8Q LOSS WILD-TYPE                                     55            100
                   vv
clus                LIFELONG NON-SMOKER
  8Q LOSS MUTATED                     0
  8Q LOSS WILD-TYPE                  66
D55V10, multiclass
                                             clus
vv                                            8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1                83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                55
  CURRENT SMOKER                                            3               100
  LIFELONG NON-SMOKER                                       0                66
D55V11, continuous
D55V12, continuous

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    54  34
  9P LOSS WILD-TYPE 142  87
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               88               229 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               34                87 
$`9P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       15.16        13.64         9.07         5.00         8.02        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7872 
        2.07        12.99         7.76         9.04        17.59        14.33 
TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
       20.52        13.55         4.67         6.38         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5360 TCGA-CN-5373 TCGA-CN-6024 
       12.59        12.13         7.89        28.47        13.58         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 
        1.38         2.73         3.29         2.93        10.42        32.88 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5247 
       13.25        14.96        45.27        33.07        29.59        11.77 
TCGA-CR-6472 TCGA-CR-6491 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7374 TCGA-CR-7388 
       34.52        11.51        47.18        40.90         0.99        27.02 
TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.82         5.13       135.29       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6933 
       19.20        57.07        48.59        43.23         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7091 
        2.14        26.43        12.03        42.35        28.31       111.12 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       52.31        12.89        10.75        36.00        31.33        26.20 
TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7421 
        4.96         2.10        18.41         9.67        22.85         0.07 
TCGA-CV-7430 TCGA-CV-7434 TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6823 
       16.27         7.13       142.49        10.39         7.76         7.82 
TCGA-D6-8568 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7595 TCGA-F7-7848 
        3.45        16.96        18.02        14.04        10.65         1.15 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8635 TCGA-IQ-7630 
        0.16         0.82         0.99         5.26 

$`9P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6873 
        6.12         5.88         7.96        53.75        57.44         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 
       13.87        23.61        20.98        37.87        14.04        71.05 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 
        6.31        10.19        10.68        17.16        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6994 
        3.19         9.07         6.61         6.18         5.82         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.68         3.75         1.51        48.16        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
       28.60        32.35        34.75        32.35         4.21        26.76 
TCGA-CQ-7063 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       48.03        16.70        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 
        7.66        12.46        15.75         9.27        39.12        47.34 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       35.84         3.42         3.06        24.95        29.23        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.92        35.41        29.92        48.36        17.16 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 
       17.06        13.35        17.75        33.11         7.07        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       13.32        24.43         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
       21.86        11.24       126.08        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
        2.50         4.14        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01         5.23         1.84        21.76        71.21 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7248 
      114.94        56.68         4.73        47.47        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 
       95.34        11.87        47.97        36.13        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
       17.82       210.94        89.33         0.46        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
        3.48        84.49        19.73        16.60         6.38        21.99 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
       10.55        27.22        13.25        10.68         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.00         5.03         4.18         4.18        37.78        34.78 
TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       15.68        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
       12.10         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 
        1.02         1.81         1.45         0.99        22.75         4.01 
TCGA-IQ-7632 
        3.72 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.07              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           142.49            210.94 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            13.12             15.75 
[1] "0.1 - 142.5 (13.1)" "0.1 - 210.9 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"9P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     21   67
  9P LOSS WILD-TYPE   69  164
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              21                69
  MALE                67               164
                   vv
clus                T1 T2 T3 T4
  9P LOSS MUTATED    6 23 20 25
  9P LOSS WILD-TYPE 22 58 45 79
D56V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1               6                22
  T2              23                58
  T3              20                45
  T4              25                79
                   vv
clus                N0 N1 N2 N3
  9P LOSS MUTATED   29 13 28  1
  9P LOSS WILD-TYPE 78 23 71  4
D56V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              29                78
  N1              13                23
  N2              28                71
  N3               1                 4
D56V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      9    2
  9P LOSS WILD-TYPE   50    4
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0               9                50
  MX               2                 4
                   vv
clus                  I  II III  IV
  9P LOSS MUTATED     4  10  17  42
  9P LOSS WILD-TYPE  16  41  28 115
D56V7, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                 4                16
  II               10                41
  III              17                28
  IV               42               115
D56V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     21   67
  9P LOSS WILD-TYPE   55  178
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               21                55
  YES              67               178
D56V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P LOSS MUTATED                                            30
  9P LOSS WILD-TYPE                                          54
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P LOSS MUTATED                                        8             33
  9P LOSS WILD-TYPE                                     49             70
                   vv
clus                LIFELONG NON-SMOKER
  9P LOSS MUTATED                    14
  9P LOSS WILD-TYPE                  52
D56V10, multiclass
                                             clus
vv                                            9P LOSS MUTATED 9P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              30                54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                49
  CURRENT SMOKER                                           33                70
  LIFELONG NON-SMOKER                                      14                52
D56V11, continuous
D56V12, continuous

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    20  11
  9Q LOSS WILD-TYPE 176 110
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               31               286 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11               110 
$`9Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-CN-6024 TCGA-CQ-6221 
       15.16        14.79         2.07         7.76         7.36        32.88 
TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-7364 TCGA-CR-7374 TCGA-CR-7390 
       29.59        11.77        34.52        47.18         0.99        29.82 
TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5973 TCGA-CV-5979 TCGA-CV-6441 
      135.29       108.33        47.28        57.07        43.23         5.88 
TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-7091 TCGA-CV-7243 TCGA-CV-7252 TCGA-CV-7255 
       26.43        12.03       111.12        31.33         4.96         2.10 
TCGA-CV-7413 TCGA-CV-7435 TCGA-D6-6823 TCGA-DQ-5631 TCGA-F7-7848 TCGA-HD-7753 
        9.67       142.49         7.82        18.02         1.15         0.16 
TCGA-HD-8635 
        0.99 

$`9Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
        9.30        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 
       57.44         5.00         8.02        12.99         3.72         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       22.78        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       35.84         3.42         3.06        24.95        29.23        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       48.36        17.16       129.21        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 
       17.75        48.59        33.11         7.07        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        4.70        21.86        11.24       126.08        19.79        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.45         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       12.10        10.65         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.82         1.02         1.81         1.45         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.16              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           142.49            210.94 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           15.160            13.955 
[1] "0.2 - 142.5 (15.2)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     10   21
  9Q LOSS WILD-TYPE   80  210
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              10                80
  MALE                21               210
                   vv
clus                T1 T2 T3 T4
  9Q LOSS MUTATED    3  9  4  9
  9Q LOSS WILD-TYPE 25 72 61 95
D57V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1               3                25
  T2               9                72
  T3               4                61
  T4               9                95
                   vv
clus                N0 N1 N2 N3
  9Q LOSS MUTATED   11  5  8  0
  9Q LOSS WILD-TYPE 96 31 91  5
D57V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0              11                96
  N1               5                31
  N2               8                91
  N3               0                 5
D57V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      5    1
  9Q LOSS WILD-TYPE   54    5
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0               5                54
  MX               1                 5
                   vv
clus                  I  II III  IV
  9Q LOSS MUTATED     2   3   7  12
  9Q LOSS WILD-TYPE  18  48  38 145
D57V7, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                 2                18
  II                3                48
  III               7                38
  IV               12               145
D57V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      8   23
  9Q LOSS WILD-TYPE   68  222
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                8                68
  YES              23               222
D57V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q LOSS MUTATED                                             5
  9Q LOSS WILD-TYPE                                          79
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q LOSS MUTATED                                        3             15
  9Q LOSS WILD-TYPE                                     54             88
                   vv
clus                LIFELONG NON-SMOKER
  9Q LOSS MUTATED                     6
  9Q LOSS WILD-TYPE                  60
D57V10, multiclass
                                             clus
vv                                            9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                54
  CURRENT SMOKER                                           15                88
  LIFELONG NON-SMOKER                                       6                60
D57V11, continuous
D57V12, continuous

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    27  21
  10P LOSS WILD-TYPE 169 100
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                48                269 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                21                100 
$`10P LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6873 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-4723 
        9.07         5.00         3.72        37.87        20.52        13.55 
TCGA-CN-4725 TCGA-CN-4737 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-6011 TCGA-CN-6018 
       10.19         7.89        28.47         8.28         7.50         1.48 
TCGA-CN-6988 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-6225 TCGA-CR-7369 
        1.38         3.75        48.16         2.93        13.25        35.84 
TCGA-CR-7370 TCGA-CR-7380 TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5435 TCGA-CV-5444 
        3.42        19.92        12.89         5.13        47.28        64.73 
TCGA-CV-6936 TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6961 TCGA-CV-6962 
        5.46       126.08         6.08        65.82         2.50         4.14 
TCGA-CV-7090 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 
      126.12         9.01         1.84        71.21        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7434 TCGA-CX-7219 
       18.97        25.94        14.86        54.90         7.13        27.22 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6826 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-HD-8635 
        8.22         7.82         5.03        18.02        21.73         0.99 

$`10P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 
       57.44         8.02        14.79         2.07        12.99         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       14.33        71.05         6.31         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        9.50         5.69        12.39        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 
        4.70         5.06         6.61         5.23         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 
        3.91         3.68         3.29         1.51        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 
        9.27        47.18        39.12        47.34        40.90         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 
       24.95        29.23         0.99        31.96        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         9.70        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43        11.24        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       15.06        30.05        53.92        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       28.31        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 
        5.23        52.31        12.89        21.76        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 
       56.68         4.73        47.47        36.00        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        22.85        25.02         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49         3.48        16.27        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 
        7.76        13.25        10.68         2.53         5.00         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.45         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        18.90        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.99               0.07 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            126.12             210.94 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             11.54              14.79 
[1] "1.0 - 126.1 (11.5)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     10   38
  10P LOSS WILD-TYPE   80  193
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               10                 80
  MALE                 38                193
                    vv
clus                 T1 T2 T3 T4
  10P LOSS MUTATED    2  9  8 23
  10P LOSS WILD-TYPE 26 72 57 81
D58V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                2                 26
  T2                9                 72
  T3                8                 57
  T4               23                 81
                    vv
clus                 N0 N1 N2 N3
  10P LOSS MUTATED   14  6 17  1
  10P LOSS WILD-TYPE 93 30 82  4
D58V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               14                 93
  N1                6                 30
  N2               17                 82
  N3                1                  4
D58V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      3    2
  10P LOSS WILD-TYPE   56    4
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0                3                 56
  MX                2                  4
                    vv
clus                   I  II III  IV
  10P LOSS MUTATED     1   6   7  28
  10P LOSS WILD-TYPE  19  45  38 129
D58V7, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                  1                 19
  II                 6                 45
  III                7                 38
  IV                28                129
D58V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     12   36
  10P LOSS WILD-TYPE   64  209
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                12                 64
  YES               36                209
D58V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P LOSS MUTATED                                            17
  10P LOSS WILD-TYPE                                          67
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P LOSS MUTATED                                        9             12
  10P LOSS WILD-TYPE                                     48             91
                    vv
clus                 LIFELONG NON-SMOKER
  10P LOSS MUTATED                     9
  10P LOSS WILD-TYPE                  57
D58V10, multiclass
                                             clus
vv                                            10P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               17
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                            12
  LIFELONG NON-SMOKER                                        9
                                             clus
vv                                            10P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      48
  CURRENT SMOKER                                              91
  LIFELONG NON-SMOKER                                         57
D58V11, continuous
D58V12, continuous

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    13  14
  10Q LOSS WILD-TYPE 183 107
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                27                290 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                14                107 
$`10Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-4725 
       15.16         9.07         6.12        37.87        20.52        10.19 
TCGA-CN-5360 TCGA-CQ-6225 TCGA-CR-6470 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7389 
       28.47        13.25        50.01        35.84         3.42        12.89 
TCGA-CR-7398 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6961 
        5.13       108.33        47.28         5.46        26.43         2.50 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7245 TCGA-CV-7406 TCGA-CV-7418 TCGA-CV-7424 
        4.14       126.12        26.20        58.06        25.94        14.86 
TCGA-D6-6823 TCGA-DQ-5631 TCGA-DQ-7590 
        7.82        18.02        21.73 

$`10Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       14.33        71.05         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       40.90         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      135.29        17.16       129.21        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        9.70        20.52         4.70        21.86        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 
       47.97         2.10        36.13        18.41        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25        10.68         8.22         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              2.50               0.07 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            126.12             210.94 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            18.020             13.755 
[1] "2.5 - 126.1 (18.0)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      3   24
  10Q LOSS WILD-TYPE   87  207
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE                3                 87
  MALE                 24                207
                    vv
clus                 T1 T2 T3 T4
  10Q LOSS MUTATED    0  9  4  9
  10Q LOSS WILD-TYPE 28 72 61 95
D59V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                0                 28
  T2                9                 72
  T3                4                 61
  T4                9                 95
                    vv
clus                 N0 N1 N2 N3
  10Q LOSS MUTATED   10  2  8  0
  10Q LOSS WILD-TYPE 97 34 91  5
D59V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0               10                 97
  N1                2                 34
  N2                8                 91
  N3                0                  5
D59V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4    1
  10Q LOSS WILD-TYPE   55    5
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0                4                 55
  MX                1                  5
                    vv
clus                   I  II III  IV
  10Q LOSS MUTATED     0   7   3  12
  10Q LOSS WILD-TYPE  20  44  42 145
D59V7, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                  0                 20
  II                 7                 44
  III                3                 42
  IV                12                145
D59V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      7   20
  10Q LOSS WILD-TYPE   69  225
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 7                 69
  YES               20                225
D59V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q LOSS MUTATED                                            11
  10Q LOSS WILD-TYPE                                          73
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q LOSS MUTATED                                        4              9
  10Q LOSS WILD-TYPE                                     53             94
                    vv
clus                 LIFELONG NON-SMOKER
  10Q LOSS MUTATED                     3
  10Q LOSS WILD-TYPE                  63
D59V10, multiclass
                                             clus
vv                                            10Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            10Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              94
  LIFELONG NON-SMOKER                                         63
D59V11, continuous
D59V12, continuous

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    26  15
  11P LOSS WILD-TYPE 170 106
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                276 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                15                106 
$`11P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4227 
       15.16         9.07         2.07        12.99         7.76         4.37 
TCGA-CN-4735 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5374 
       12.13        26.63         9.50         8.28        11.54         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6988 TCGA-CN-6992 TCGA-CQ-5332 TCGA-CR-5247 
        7.50         4.70         1.38         2.73        10.42        11.77 
TCGA-CR-5248 TCGA-CR-7385 TCGA-CR-7399 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6936 
       54.64        32.78         5.92         5.88        90.08         5.46 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7253 
       26.43       126.08        42.35       111.12         1.84        11.87 
TCGA-CV-7415 TCGA-CV-7430 TCGA-CX-7082 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5629 
       22.85        16.27        10.39         3.45        37.78        16.96 
TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7753 TCGA-HD-8635 
       12.10         1.15         0.46         0.16         0.99 

$`11P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        5.00         8.02        14.79         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        9.04         4.60        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       23.61        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       10.68         5.46        11.28        12.59        17.16        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
        7.89        14.33        11.44        28.77        13.05         9.17 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
        5.69        12.39        28.47        16.21        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 
       12.49         8.52        13.58         6.81         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        6.18         7.36         5.82         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-5250 
       16.70        22.78        29.59        84.23        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       40.96        13.32        24.43         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 
        4.70        21.86        11.24        19.79        12.03        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34         4.96        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        4.18        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-F7-8489 
       21.73        11.84         9.83        12.13        10.65         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         1.87         0.07         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45         0.99        22.75         5.26         4.01         3.72 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.16               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            126.08             210.94 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            10.390             15.715 
[1] "0.2 - 126.1 (10.4)" "0.1 - 210.9 (15.7)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      9   32
  11P LOSS WILD-TYPE   81  199
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE                9                 81
  MALE                 32                199
                    vv
clus                 T1 T2 T3 T4
  11P LOSS MUTATED    5  8  9 11
  11P LOSS WILD-TYPE 23 73 56 93
D60V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                5                 23
  T2                8                 73
  T3                9                 56
  T4               11                 93
                    vv
clus                 N0 N1 N2 N3
  11P LOSS MUTATED   11  5 12  3
  11P LOSS WILD-TYPE 96 31 87  2
D60V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               11                 96
  N1                5                 31
  N2               12                 87
  N3                3                  2
D60V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      7    1
  11P LOSS WILD-TYPE   52    5
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0                7                 52
  MX                1                  5
                    vv
clus                   I  II III  IV
  11P LOSS MUTATED     3   2   7  20
  11P LOSS WILD-TYPE  17  49  38 137
D60V7, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                  3                 17
  II                 2                 49
  III                7                 38
  IV                20                137
D60V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   30
  11P LOSS WILD-TYPE   65  215
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                11                 65
  YES               30                215
D60V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P LOSS MUTATED                                            12
  11P LOSS WILD-TYPE                                          72
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P LOSS MUTATED                                        4             19
  11P LOSS WILD-TYPE                                     53             84
                    vv
clus                 LIFELONG NON-SMOKER
  11P LOSS MUTATED                     4
  11P LOSS WILD-TYPE                  62
D60V10, multiclass
                                             clus
vv                                            11P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                            19
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            11P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 72
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              84
  LIFELONG NON-SMOKER                                         62
D60V11, continuous
D60V12, continuous

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    36  23
  11Q LOSS WILD-TYPE 160  98
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                59                258 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                23                 98 
$`11Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 
       15.16        13.64        37.28         9.07         8.15         5.00 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-7866 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-4741 
       12.99         7.76        20.98         6.38        12.13        28.77 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
       28.47         8.28        11.54         9.01         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-5323 TCGA-CQ-6221 TCGA-CR-5243 
        5.06         2.73         3.68        48.16        32.88        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-6470 TCGA-CR-6487 TCGA-CR-7380 TCGA-CR-7399 
       54.64        37.87        50.01         7.66        19.92         5.92 
TCGA-CV-5432 TCGA-CV-5441 TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6441 TCGA-CV-6935 
      129.21        87.55        13.35        33.11         5.88         9.70 
TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6961 TCGA-CV-7095 
        5.46        21.86        26.43       126.08         2.50        18.81 
TCGA-CV-7102 TCGA-CV-7247 TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7415 TCGA-CX-7082 
        1.84        18.97        58.06         0.46        22.85        10.39 
TCGA-D6-6825 TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7594 
        5.00        37.78        14.04        21.73        12.13        12.10 
TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7753 TCGA-HD-8314 TCGA-HL-7533 
        1.15         0.46         0.16         1.45        22.75 

$`11Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 
        9.30         6.25        27.78        57.90         6.12         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        7.96        53.75        57.44         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        3.72         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7870 
       18.31        10.19        17.59        13.87        23.61        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 
       13.05         9.17         9.50         5.69        12.39        16.21 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.84        11.57        12.49         8.52        13.58         6.81 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         5.82         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.75         3.29         1.51        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
        4.21        28.60        32.35        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5250 TCGA-CR-6467 
       16.70        22.78        29.59        11.77        26.24        58.42 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96        34.06        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.36       135.29        17.16       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        89.82        76.47        84.39        64.73        17.06 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 
       13.32        24.43        90.08         2.14        20.52         4.70 
TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
       11.24        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
       28.31         4.14        64.80       126.12       111.12        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 
       17.82       210.94        89.33         9.67        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 
      142.49        16.60         6.38        21.99        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5629 
        5.03         4.18         3.45         4.18        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7595 
       15.68        18.02        18.90        11.84         9.83        10.65 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
        0.43         0.99         1.87         0.07         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81         0.99         0.99         5.26         4.01         3.72 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.16               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            129.21             210.94 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             12.13              14.91 
[1] "0.2 - 129.2 (12.1)" "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      9   51
  11Q LOSS WILD-TYPE   81  180
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                9                 81
  MALE                 51                180
                    vv
clus                 T1 T2 T3 T4
  11Q LOSS MUTATED    5 13 11 17
  11Q LOSS WILD-TYPE 23 68 54 87
D61V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                5                 23
  T2               13                 68
  T3               11                 54
  T4               17                 87
                    vv
clus                 N0 N1 N2 N3
  11Q LOSS MUTATED   19  3 19  2
  11Q LOSS WILD-TYPE 88 33 80  3
D61V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               19                 88
  N1                3                 33
  N2               19                 80
  N3                2                  3
D61V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     10    1
  11Q LOSS WILD-TYPE   49    5
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               10                 49
  MX                1                  5
                    vv
clus                   I  II III  IV
  11Q LOSS MUTATED     5   6   5  29
  11Q LOSS WILD-TYPE  15  45  40 128
D61V7, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                  5                 15
  II                 6                 45
  III                5                 40
  IV                29                128
D61V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     20   40
  11Q LOSS WILD-TYPE   56  205
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                20                 56
  YES               40                205
D61V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q LOSS MUTATED                                            17
  11Q LOSS WILD-TYPE                                          67
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q LOSS MUTATED                                        9             22
  11Q LOSS WILD-TYPE                                     48             81
                    vv
clus                 LIFELONG NON-SMOKER
  11Q LOSS MUTATED                    11
  11Q LOSS WILD-TYPE                  55
D61V10, multiclass
                                             clus
vv                                            11Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               17
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                            22
  LIFELONG NON-SMOKER                                       11
                                             clus
vv                                            11Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      48
  CURRENT SMOKER                                              81
  LIFELONG NON-SMOKER                                         55
D61V11, continuous
D61V12, continuous

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED     6   6
  12P LOSS WILD-TYPE 190 115
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                305 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 6                115 
$`12P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-CN-5365 
        8.15         5.00        14.79        12.99         7.76        11.54 
TCGA-CR-7389 TCGA-CV-6441 TCGA-CV-7090 TCGA-CV-7100 TCGA-DQ-5631 TCGA-HD-8224 
       12.89         5.88       126.12         9.01        18.02         1.81 

$`12P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
       57.44         8.02         2.07         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47         8.28        16.21        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        40.96        13.32        24.43        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7102 
      111.12        18.81        12.66         7.99         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        4.18        37.78        34.78        16.96        15.68        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         0.82         1.02         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              1.81               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            126.12             210.94 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            10.275             14.860 
[1] "1.8 - 126.1 (10.3)" "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      1   11
  12P LOSS WILD-TYPE   89  220
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                1                 89
  MALE                 11                220
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED     0   4   3   0
  12P LOSS WILD-TYPE  28  77  62 104
D62V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                0                 28
  T2                4                 77
  T3                3                 62
  T4                0                104
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED     1   2   2   1
  12P LOSS WILD-TYPE 106  34  97   4
D62V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                1                106
  N1                2                 34
  N2                2                 97
  N3                1                  4
D62V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0    0
  12P LOSS WILD-TYPE   59    6
                    vv
clus                   I  II III  IV
  12P LOSS MUTATED     0   1   3   3
  12P LOSS WILD-TYPE  20  50  42 154
D62V7, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                  0                 20
  II                 1                 50
  III                3                 42
  IV                 3                154
D62V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      6    6
  12P LOSS WILD-TYPE   70  239
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 6                 70
  YES                6                239
D62V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P LOSS MUTATED                                             3
  12P LOSS WILD-TYPE                                          81
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P LOSS MUTATED                                        1              6
  12P LOSS WILD-TYPE                                     56             97
                    vv
clus                 LIFELONG NON-SMOKER
  12P LOSS MUTATED                     2
  12P LOSS WILD-TYPE                  64
D62V10, multiclass
                                             clus
vv                                            12P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            12P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                              97
  LIFELONG NON-SMOKER                                         64
D62V11, continuous
D62V12, continuous

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     6   2
  12Q LOSS WILD-TYPE 190 119
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                309 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                119 
$`12Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-7269 TCGA-CN-6024 TCGA-CR-6493 TCGA-CR-7390 
        5.00        14.79         7.76         7.36         9.27        29.82 
TCGA-CV-7090 TCGA-F7-7848 
      126.12         1.15 

$`12Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 
       11.84         9.83        12.13        12.10        10.65         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              1.15               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            126.12             210.94 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             8.515             14.330 
[1] "1.1 - 126.1 (8.5)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
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        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      1    7
  12Q LOSS WILD-TYPE   89  224
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                1                 89
  MALE                  7                224
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED     0   2   1   3
  12Q LOSS WILD-TYPE  28  79  64 101
D63V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                0                 28
  T2                2                 79
  T3                1                 64
  T4                3                101
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED     1   2   2   0
  12Q LOSS WILD-TYPE 106  34  97   5
D63V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                1                106
  N1                2                 34
  N2                2                 97
  N3                0                  5
D63V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2    0
  12Q LOSS WILD-TYPE   57    6
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                2                 57
  MX                0                  6
                    vv
clus                   I  II III  IV
  12Q LOSS MUTATED     0   1   1   4
  12Q LOSS WILD-TYPE  20  50  44 153
D63V7, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                  0                 20
  II                 1                 50
  III                1                 44
  IV                 4                153
D63V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      3    5
  12Q LOSS WILD-TYPE   73  240
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 3                 73
  YES                5                240
D63V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q LOSS MUTATED                                             1
  12Q LOSS WILD-TYPE                                          83
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q LOSS MUTATED                                        1              5
  12Q LOSS WILD-TYPE                                     56             98
                    vv
clus                 LIFELONG NON-SMOKER
  12Q LOSS MUTATED                     1
  12Q LOSS WILD-TYPE                  65
D63V10, multiclass
                                             clus
vv                                            12Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            12Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                              98
  LIFELONG NON-SMOKER                                         65
D63V11, continuous
D63V12, continuous

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    43  21
  13Q LOSS WILD-TYPE 153 100
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                64                253 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                21                100 
$`13Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 
       15.16         9.07         6.12         8.02         2.07         7.76 
TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-8601 
        9.04         4.37        17.59        23.61        14.04        20.52 
TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5360 TCGA-CN-5363 
       10.19        11.28        11.44        26.63        28.47         8.28 
TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 
        9.01         7.50         4.70         9.07         7.36         1.38 
TCGA-CQ-5323 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-7364 
       48.16        29.46        32.35        34.52         7.66        47.18 
TCGA-CR-7372 TCGA-CR-7385 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5441 
       24.95        32.78        29.92        48.36       108.33        87.55 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7099 
       11.24        15.06        65.82         4.14       111.12         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7245 
        9.01         1.84        52.31        21.76        36.00        26.20 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7435 TCGA-CV-7440 
       18.41        58.06        25.94         0.07       142.49        21.99 
TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6825 TCGA-D6-8568 TCGA-DQ-7588 TCGA-DQ-7595 
       10.39        27.22         5.00         3.45        14.04        10.65 
TCGA-F7-7848 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8635 
        1.15         0.16         1.02         0.99 

$`13Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
       14.79        12.99         3.72         6.12        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 
       18.31        10.19        13.87        20.98        37.87        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       71.05         6.31        13.55         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
        5.46        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       14.33        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        8.52        13.58         6.81         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 
        1.48         4.41         3.19         6.61         6.18         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        27.65        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        28.60        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34        11.64        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.13         5.92        35.41       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        89.82        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       42.35        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
        8.38        28.31         2.50        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       12.66         5.23        12.89        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
       56.68         4.73        47.47        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       22.85        25.02        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
        7.13        16.60         6.38        10.55         7.76        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         7.82         2.53         5.03         4.18 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 
        0.46         0.43         0.99         1.87         0.07         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.81         1.45         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.07               0.07 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            142.49             210.94 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             12.74              14.33 
[1] "0.1 - 142.5 (12.7)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     12   52
  13Q LOSS WILD-TYPE   78  179
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               12                 78
  MALE                 52                179
                    vv
clus                 T1 T2 T3 T4
  13Q LOSS MUTATED    8 17 12 19
  13Q LOSS WILD-TYPE 20 64 53 85
D64V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1                8                 20
  T2               17                 64
  T3               12                 53
  T4               19                 85
                    vv
clus                 N0 N1 N2 N3
  13Q LOSS MUTATED   21  6 21  1
  13Q LOSS WILD-TYPE 86 30 78  4
D64V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               21                 86
  N1                6                 30
  N2               21                 78
  N3                1                  4
D64V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     12    2
  13Q LOSS WILD-TYPE   47    4
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               12                 47
  MX                2                  4
                    vv
clus                   I  II III  IV
  13Q LOSS MUTATED     6   9   8  32
  13Q LOSS WILD-TYPE  14  42  37 125
D64V7, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                  6                 14
  II                 9                 42
  III                8                 37
  IV                32                125
D64V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     13   51
  13Q LOSS WILD-TYPE   63  194
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                13                 63
  YES               51                194
D64V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q LOSS MUTATED                                            22
  13Q LOSS WILD-TYPE                                          62
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q LOSS MUTATED                                       12             23
  13Q LOSS WILD-TYPE                                     45             80
                    vv
clus                 LIFELONG NON-SMOKER
  13Q LOSS MUTATED                     6
  13Q LOSS WILD-TYPE                  60
D64V10, multiclass
                                             clus
vv                                            13Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               22
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                            23
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            13Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      45
  CURRENT SMOKER                                              80
  LIFELONG NON-SMOKER                                         60
D64V11, continuous
D64V12, continuous

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    10   6
  14Q LOSS WILD-TYPE 186 115
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                16                301 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 6                115 
$`14Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-7862 TCGA-CN-6992 TCGA-CQ-6221 
        9.07        14.79         2.07        17.59         2.73        32.88 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-7398 TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-7406 
       50.01        34.52         5.13         9.70        21.86        58.06 
TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-HD-8224 
        4.18        18.02        21.73         1.81 

$`14Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       26.24        58.42        39.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.70        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5625 
        5.00         5.03         4.18         3.45        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              1.81               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             58.06             210.94 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             16.19              14.04 
[1] "1.8 - 58.1 (16.2)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      2   14
  14Q LOSS WILD-TYPE   88  217
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE                2                 88
  MALE                 14                217
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED     0   5   4   1
  14Q LOSS WILD-TYPE  28  76  61 103
D65V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                0                 28
  T2                5                 76
  T3                4                 61
  T4                1                103
                    vv
clus                  N0  N1  N2  N3
  14Q LOSS MUTATED     4   0   5   0
  14Q LOSS WILD-TYPE 103  36  94   5
D65V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0                4                103
  N1                0                 36
  N2                5                 94
  N3                0                  5
D65V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      2    0
  14Q LOSS WILD-TYPE   57    6
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0                2                 57
  MX                0                  6
                    vv
clus                   I  II III  IV
  14Q LOSS MUTATED     0   4   0   5
  14Q LOSS WILD-TYPE  20  47  45 152
D65V7, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                  0                 20
  II                 4                 47
  III                0                 45
  IV                 5                152
D65V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      5   11
  14Q LOSS WILD-TYPE   71  234
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 5                 71
  YES               11                234
D65V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q LOSS MUTATED                                             6
  14Q LOSS WILD-TYPE                                          78
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q LOSS MUTATED                                        2              4
  14Q LOSS WILD-TYPE                                     55             99
                    vv
clus                 LIFELONG NON-SMOKER
  14Q LOSS MUTATED                     4
  14Q LOSS WILD-TYPE                  62
D65V10, multiclass
                                             clus
vv                                            14Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            14Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              99
  LIFELONG NON-SMOKER                                         62
D65V11, continuous
D65V12, continuous

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    12  12
  15Q LOSS WILD-TYPE 184 109
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                24                293 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                12                109 
$`15Q LOSS MUTATED`
TCGA-BA-5153 TCGA-BA-6868 TCGA-BA-7269 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-5363 
       57.90         5.00         7.76        37.87        10.19         8.28 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-7067 TCGA-CR-7402 TCGA-CV-5435 TCGA-CV-5970 
        3.29         1.51        16.70        29.92        47.28        13.35 
TCGA-CV-6441 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-7104 TCGA-CV-7242 TCGA-CV-7407 
        5.88        42.35        65.82        12.89        36.00        35.54 
TCGA-CV-7432 TCGA-CV-7438 TCGA-CX-7219 TCGA-D6-6517 TCGA-DQ-5631 TCGA-DQ-7592 
       84.49         6.38        27.22         8.22        18.02         9.83 

$`15Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         8.02        14.79         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.33        71.05        20.52         6.31        13.55         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.91         3.68         3.75        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       48.03        45.27        33.07        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        35.41        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        1.84        52.31        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
       56.68         4.73        47.47        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        58.06        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        16.27        19.73         7.13       142.49        16.60 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.39        10.55         7.76        13.25        10.68 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        4.18        37.78        34.78        16.96        15.68        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.90        21.73        11.84        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              1.51               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             84.49             210.94 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            15.025             14.040 
[1] "1.5 - 84.5 (15.0)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      6   18
  15Q LOSS WILD-TYPE   84  213
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                6                 84
  MALE                 18                213
                    vv
clus                 T1 T2 T3 T4
  15Q LOSS MUTATED    2  7  4  7
  15Q LOSS WILD-TYPE 26 74 61 97
D66V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                2                 26
  T2                7                 74
  T3                4                 61
  T4                7                 97
                    vv
clus                  N0  N1  N2  N3
  15Q LOSS MUTATED     7   1   6   2
  15Q LOSS WILD-TYPE 100  35  93   3
D66V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0                7                100
  N1                1                 35
  N2                6                 93
  N3                2                  3
D66V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      1    0
  15Q LOSS WILD-TYPE   58    6
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0                1                 58
  MX                0                  6
                    vv
clus                   I  II III  IV
  15Q LOSS MUTATED     2   4   3  10
  15Q LOSS WILD-TYPE  18  47  42 147
D66V7, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                  2                 18
  II                 4                 47
  III                3                 42
  IV                10                147
D66V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      6   18
  15Q LOSS WILD-TYPE   70  227
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 6                 70
  YES               18                227
D66V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q LOSS MUTATED                                             8
  15Q LOSS WILD-TYPE                                          76
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q LOSS MUTATED                                        2              7
  15Q LOSS WILD-TYPE                                     55             96
                    vv
clus                 LIFELONG NON-SMOKER
  15Q LOSS MUTATED                     6
  15Q LOSS WILD-TYPE                  60
D66V10, multiclass
                                             clus
vv                                            15Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             7
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            15Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              96
  LIFELONG NON-SMOKER                                         60
D66V11, continuous
D66V12, continuous

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED     7   5
  16P LOSS WILD-TYPE 189 116
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                305 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 5                116 
$`16P LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-7269 TCGA-BB-7870 TCGA-BB-8601 TCGA-CR-6473 
       13.64         9.07         7.76        37.87        20.52        36.99 
TCGA-CR-7374 TCGA-CR-7399 TCGA-CV-5436 TCGA-CV-7418 TCGA-CV-7424 TCGA-HD-8224 
        0.99         5.92        19.20        25.94        14.86         1.81 

$`16P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.33        71.05         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95        29.23        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21       108.33        47.28        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 
       25.02         0.07        34.09       100.54        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         0.82         1.02         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.99               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             37.87             210.94 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             14.25              14.04 
[1] "1.0 - 37.9 (14.2)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2   10
  16P LOSS WILD-TYPE   88  221
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE                2                 88
  MALE                 10                221
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED     0   1   5   2
  16P LOSS WILD-TYPE  28  80  60 102
D67V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                0                 28
  T2                1                 80
  T3                5                 60
  T4                2                102
                    vv
clus                  N0  N1  N2  N3
  16P LOSS MUTATED     1   2   5   0
  16P LOSS WILD-TYPE 106  34  94   5
D67V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0                1                106
  N1                2                 34
  N2                5                 94
  N3                0                  5
D67V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      1    1
  16P LOSS WILD-TYPE   58    5
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0                1                 58
  MX                1                  5
                    vv
clus                   I  II III  IV
  16P LOSS MUTATED     0   0   2   6
  16P LOSS WILD-TYPE  20  51  43 151
D67V7, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                  0                 20
  II                 0                 51
  III                2                 43
  IV                 6                151
D67V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2   10
  16P LOSS WILD-TYPE   74  235
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 2                 74
  YES               10                235
D67V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P LOSS MUTATED                                             5
  16P LOSS WILD-TYPE                                          79
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P LOSS MUTATED                                        0              6
  16P LOSS WILD-TYPE                                     57             97
                    vv
clus                 LIFELONG NON-SMOKER
  16P LOSS MUTATED                     1
  16P LOSS WILD-TYPE                  65
D67V10, multiclass
                                             clus
vv                                            16P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     0
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            16P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      57
  CURRENT SMOKER                                              97
  LIFELONG NON-SMOKER                                         65
D67V11, continuous
D67V12, continuous

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    19   7
  16Q LOSS WILD-TYPE 177 114
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                26                291 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 7                114 
$`16Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-7861 
       13.64         9.07        57.90        57.44         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-5360 TCGA-CN-6021 
       17.59        20.98        37.87        20.52        28.47         9.07 
TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5443 
       84.23        58.42        36.99         5.13        29.92        84.39 
TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6827 TCGA-DQ-7589 TCGA-DQ-7590 
        0.46        25.94        14.86         4.18        18.90        21.73 
TCGA-DQ-7591 TCGA-HD-8224 
       11.84         1.81 

$`16Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15         6.25        27.78 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
        6.12         5.88         7.96        53.75         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 TCGA-BB-7864 
       95.05         9.04         4.37        18.31        13.87        23.61 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.04        14.33        71.05         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67        22.85        25.02         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 
        8.22         7.82         2.53         5.00         5.03         3.45 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       14.04         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        0.82         1.02         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.46               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             84.39             210.94 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             19.71              13.58 
[1] "0.5 - 84.4 (19.7)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
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        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   23
  16Q LOSS WILD-TYPE   87  208
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE                3                 87
  MALE                 23                208
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED     2   3   5   4
  16Q LOSS WILD-TYPE  26  78  60 100
D68V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1                2                 26
  T2                3                 78
  T3                5                 60
  T4                4                100
                    vv
clus                  N0  N1  N2  N3
  16Q LOSS MUTATED     5   3   5   0
  16Q LOSS WILD-TYPE 102  33  94   5
D68V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0                5                102
  N1                3                 33
  N2                5                 94
  N3                0                  5
D68V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      2    1
  16Q LOSS WILD-TYPE   57    5
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0                2                 57
  MX                1                  5
                    vv
clus                   I  II III  IV
  16Q LOSS MUTATED     1   1   4   7
  16Q LOSS WILD-TYPE  19  50  41 150
D68V7, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                  1                 19
  II                 1                 50
  III                4                 41
  IV                 7                150
D68V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      4   22
  16Q LOSS WILD-TYPE   72  223
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 4                 72
  YES               22                223
D68V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q LOSS MUTATED                                            11
  16Q LOSS WILD-TYPE                                          73
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q LOSS MUTATED                                        3              8
  16Q LOSS WILD-TYPE                                     54             95
                    vv
clus                 LIFELONG NON-SMOKER
  16Q LOSS MUTATED                     4
  16Q LOSS WILD-TYPE                  62
D68V10, multiclass
                                             clus
vv                                            16Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            16Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              95
  LIFELONG NON-SMOKER                                         62
D68V11, continuous
D68V12, continuous

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    27  18
  17P LOSS WILD-TYPE 169 103
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                45                272 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                18                103 
$`17P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6871 TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 
        8.15         5.00         2.07        17.59        20.98        37.87 
TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-5360 TCGA-CN-5364 
       14.04        10.19        11.28        12.13        28.47        16.21 
TCGA-CN-6988 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-6472 TCGA-CR-6481 
        1.38        34.75        13.25        14.96        34.52        10.22 
TCGA-CR-7364 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5439 TCGA-CV-5970 
       47.18         3.06        29.82         5.13        17.95        13.35 
TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6961 TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7245 
        5.88        53.92         2.50         1.84        10.75        26.20 
TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7423 TCGA-CV-7428 
       18.97        11.87        18.41        58.06       100.54        54.90 
TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6823 TCGA-D6-8569 TCGA-DQ-5629 
      142.49        21.99         7.76         7.82         4.18        16.96 
TCGA-DQ-7591 TCGA-DQ-7595 TCGA-HD-8635 
       11.84        10.65         0.99 

$`17P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       10.19        13.87        23.61        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39         8.28        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.88        32.35         4.21        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6482 
       36.99        18.51        16.90         6.02        11.90        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.42        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        19.20        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 
       42.35        15.06        30.05         6.08        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        71.21       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        31.33        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 
        4.96        47.97         2.10        36.13        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94         0.07        34.09        14.86        56.48       156.49 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
        3.48        16.27        84.49        19.73         7.13        16.60 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
        6.38        10.39        10.55        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        8.22         2.53         5.00         5.03         4.18         3.45 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 
       21.73         9.83        12.13        12.10         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.81         1.45         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.99               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            142.49             210.94 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             13.35              14.33 
[1] "1.0 - 142.5 (13.3)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      8   37
  17P LOSS WILD-TYPE   82  194
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE                8                 82
  MALE                 37                194
                    vv
clus                 T1 T2 T3 T4
  17P LOSS MUTATED    2 11 13 11
  17P LOSS WILD-TYPE 26 70 52 93
D69V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1                2                 26
  T2               11                 70
  T3               13                 52
  T4               11                 93
                    vv
clus                 N0 N1 N2 N3
  17P LOSS MUTATED   17  4 12  0
  17P LOSS WILD-TYPE 90 32 87  5
D69V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               17                 90
  N1                4                 32
  N2               12                 87
  N3                0                  5
D69V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      6    1
  17P LOSS WILD-TYPE   53    5
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0                6                 53
  MX                1                  5
                    vv
clus                   I  II III  IV
  17P LOSS MUTATED     0  11   8  18
  17P LOSS WILD-TYPE  20  40  37 139
D69V7, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                  0                 20
  II                11                 40
  III                8                 37
  IV                18                139
D69V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      8   37
  17P LOSS WILD-TYPE   68  208
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 8                 68
  YES               37                208
D69V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P LOSS MUTATED                                            11
  17P LOSS WILD-TYPE                                          73
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P LOSS MUTATED                                        8             19
  17P LOSS WILD-TYPE                                     49             84
                    vv
clus                 LIFELONG NON-SMOKER
  17P LOSS MUTATED                     5
  17P LOSS WILD-TYPE                  61
D69V10, multiclass
                                             clus
vv                                            17P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            19
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            17P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      49
  CURRENT SMOKER                                              84
  LIFELONG NON-SMOKER                                         61
D69V11, continuous
D69V12, continuous

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED     5   1
  17Q LOSS WILD-TYPE 191 120
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                311 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 1                120 
$`17Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6871 TCGA-CN-6011 TCGA-CV-7247 TCGA-D6-6823 TCGA-HD-8635 
        5.00         2.07         7.50        18.97         7.82         0.99 

$`17Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       26.20        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         5.26         4.01         3.72 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.99               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             18.97             210.94 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              6.25              14.33 
[1] "1.0 - 19.0 (6.2)"   "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      1    5
  17Q LOSS WILD-TYPE   89  226
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                1                 89
  MALE                  5                226
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED     1   1   1   1
  17Q LOSS WILD-TYPE  27  80  64 103
D70V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                1                 27
  T2                1                 80
  T3                1                 64
  T4                1                103
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED     3   1   0   0
  17Q LOSS WILD-TYPE 104  35  99   5
D70V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                3                104
  N1                1                 35
  N2                0                 99
  N3                0                  5
D70V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      0    1
  17Q LOSS WILD-TYPE   59    5
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                0                 59
  MX                1                  5
                    vv
clus                   I  II III  IV
  17Q LOSS MUTATED     0   1   2   1
  17Q LOSS WILD-TYPE  20  50  43 156
D70V7, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  I                  0                 20
  II                 1                 50
  III                2                 43
  IV                 1                156
D70V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      3    3
  17Q LOSS WILD-TYPE   73  242
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 3                 73
  YES                3                242
D70V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q LOSS MUTATED                                             3
  17Q LOSS WILD-TYPE                                          81
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q LOSS MUTATED                                        0              2
  17Q LOSS WILD-TYPE                                     57            101
                    vv
clus                 LIFELONG NON-SMOKER
  17Q LOSS MUTATED                     1
  17Q LOSS WILD-TYPE                  65
D70V10, multiclass
                                             clus
vv                                            17Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     0
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            17Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      57
  CURRENT SMOKER                                             101
  LIFELONG NON-SMOKER                                         65
D70V11, continuous
D70V12, continuous

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    16  13
  18P LOSS WILD-TYPE 180 108
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                288 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                13                108 
$`18P LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6870 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-6995 TCGA-CN-6996 
        5.00        14.79         6.38        12.13         3.68         3.75 
TCGA-CQ-6223 TCGA-CR-7367 TCGA-CR-7374 TCGA-CV-5435 TCGA-CV-6003 TCGA-CV-6933 
       34.75        47.34         0.99        47.28        40.96        90.08 
TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7091 
       26.43        42.35        53.92        28.31         2.50       111.12 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7245 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7429 
       52.31        12.89        26.20        36.13        35.54         3.48 
TCGA-CX-7219 TCGA-DQ-5629 TCGA-F7-7848 TCGA-HD-7229 TCGA-IQ-7630 
       27.22        16.96         1.15         0.07         5.26 

$`18P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         2.73         3.91         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.12        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       29.23        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       57.07        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
        8.38         4.14        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01         5.23         1.84        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
       47.97         2.10        18.41        58.06        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 
        9.83        12.13        12.10        10.65         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         1.87         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45         0.99         0.99        22.75         4.01         3.72 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            111.12             210.94 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            26.200             13.755 
[1] "0.1 - 111.1 (26.2)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     10   19
  18P LOSS WILD-TYPE   80  212
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               10                 80
  MALE                 19                212
                    vv
clus                 T1 T2 T3 T4
  18P LOSS MUTATED    1  8  5 11
  18P LOSS WILD-TYPE 27 73 60 93
D71V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                1                 27
  T2                8                 73
  T3                5                 60
  T4               11                 93
                    vv
clus                 N0 N1 N2 N3
  18P LOSS MUTATED   11  5  7  1
  18P LOSS WILD-TYPE 96 31 92  4
D71V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               11                 96
  N1                5                 31
  N2                7                 92
  N3                1                  4
D71V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1    0
  18P LOSS WILD-TYPE   58    6
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0                1                 58
  MX                0                  6
                    vv
clus                   I  II III  IV
  18P LOSS MUTATED     1   4   5  15
  18P LOSS WILD-TYPE  19  47  40 142
D71V7, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                  1                 19
  II                 4                 47
  III                5                 40
  IV                15                142
D71V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      8   21
  18P LOSS WILD-TYPE   68  224
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 8                 68
  YES               21                224
D71V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P LOSS MUTATED                                             9
  18P LOSS WILD-TYPE                                          75
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P LOSS MUTATED                                        3              9
  18P LOSS WILD-TYPE                                     54             94
                    vv
clus                 LIFELONG NON-SMOKER
  18P LOSS MUTATED                     7
  18P LOSS WILD-TYPE                  59
D71V10, multiclass
                                             clus
vv                                            18P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        7
                                             clus
vv                                            18P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 75
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              94
  LIFELONG NON-SMOKER                                         59
D71V11, continuous
D71V12, continuous

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    50  39
  18Q LOSS WILD-TYPE 146  82
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                89                228 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                39                 82 
$`18Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6870 TCGA-BB-4224 TCGA-BB-7862 
       15.16         9.30         5.00        14.79         9.04        17.59 
TCGA-BB-7872 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33        20.52        13.55        10.19         4.67         6.38 
TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-5364 
       11.28        12.13         7.89         9.17         8.28        16.21 
TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6988 TCGA-CN-6995 
       11.57         8.52        13.58         7.50         1.38         3.68 
TCGA-CN-6996 TCGA-CQ-5326 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 
        3.75         2.93        28.60        34.75        13.25        14.96 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7373 
       45.27        33.07        16.70         9.27        39.12        29.23 
TCGA-CR-7374 TCGA-CR-7386 TCGA-CR-7399 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5441 
        0.99        47.01         5.92        47.28        17.95        87.55 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 
       17.06        13.35        57.07        48.59        33.11        43.23 
TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 
       40.96         5.88        90.08        26.43        12.03        42.35 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
       53.92        65.82        28.31       126.12       111.12        12.66 
TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        5.23        12.89        31.33        26.20        18.97        17.10 
TCGA-CV-7253 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7430 
       11.87        35.54        17.82       100.54         3.48        16.27 
TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 
        7.13         6.38        21.99         7.76        27.22        10.68 
TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-8568 TCGA-DQ-5629 TCGA-DQ-7595 TCGA-F7-7848 
        7.82         5.00         3.45        16.96        10.65         1.15 
TCGA-HD-7229 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 TCGA-IQ-7630 
        0.07         1.02         1.81         0.99         5.26 

$`18Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        37.28         9.07         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
        8.02         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
       95.05         4.60         4.37        18.31        10.19        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-CN-4722 
       23.61        20.98        37.87        14.04        71.05         6.31 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 
       10.68         5.46        12.59        17.16        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 
       11.44        26.63        28.77        13.05         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5374 
       12.39        28.47        11.54        11.84        12.49         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         2.73         3.91         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 
       10.42        11.21         4.21        32.35        32.88        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
        4.21        26.76        48.03        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       11.51        15.75        47.18        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.42         3.06        24.95        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        32.78        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
      129.21       108.33        19.20        89.82        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 
       64.73        17.75         7.07        13.32        24.43         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 
      126.08        19.79        15.06        30.05         6.08        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7095 
        7.13         8.38         2.50         4.14        64.80        18.81 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01         1.84        52.31        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       58.06       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94         0.07        34.09        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 
      156.49        54.90        84.49        19.73       142.49        16.60 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 
       10.39        10.55        13.25         8.22         2.53         5.03 
TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18         4.18        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7753 
       12.10         0.46         0.43         0.99         1.87         0.16 
TCGA-HD-7754 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         1.45         0.99        22.75         4.01         3.72 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            126.12             210.94 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            13.550             14.595 
[1] "0.1 - 126.1 (13.6)" "0.1 - 210.9 (14.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
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        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     21   69
  18Q LOSS WILD-TYPE   69  162
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               21                 69
  MALE                 69                162
                    vv
clus                 T1 T2 T3 T4
  18Q LOSS MUTATED    9 21 22 33
  18Q LOSS WILD-TYPE 19 60 43 71
D72V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1                9                 19
  T2               21                 60
  T3               22                 43
  T4               33                 71
                    vv
clus                 N0 N1 N2 N3
  18Q LOSS MUTATED   30 14 30  3
  18Q LOSS WILD-TYPE 77 22 69  2
D72V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               30                 77
  N1               14                 22
  N2               30                 69
  N3                3                  2
D72V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     12    3
  18Q LOSS WILD-TYPE   47    3
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               12                 47
  MX                3                  3
                    vv
clus                   I  II III  IV
  18Q LOSS MUTATED     7  13  16  49
  18Q LOSS WILD-TYPE  13  38  29 108
D72V7, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                  7                 13
  II                13                 38
  III               16                 29
  IV                49                108
D72V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     21   69
  18Q LOSS WILD-TYPE   55  176
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                21                 55
  YES               69                176
D72V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q LOSS MUTATED                                            30
  18Q LOSS WILD-TYPE                                          54
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q LOSS MUTATED                                        8             27
  18Q LOSS WILD-TYPE                                     49             76
                    vv
clus                 LIFELONG NON-SMOKER
  18Q LOSS MUTATED                    20
  18Q LOSS WILD-TYPE                  46
D72V10, multiclass
                                             clus
vv                                            18Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               30
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            27
  LIFELONG NON-SMOKER                                       20
                                             clus
vv                                            18Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      49
  CURRENT SMOKER                                              76
  LIFELONG NON-SMOKER                                         46
D72V11, continuous
D72V12, continuous

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    12  15
  19P LOSS WILD-TYPE 184 106
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                27                290 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                15                106 
$`19P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5153 TCGA-BA-6868 TCGA-CN-4725 TCGA-CN-5363 TCGA-CN-5370 
        8.15        57.90         5.00        10.19         8.28         8.52 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-7364 
        2.73         3.68        32.35        34.75        13.25        47.18 
TCGA-CR-7365 TCGA-CR-7370 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6945 
       39.12         3.42         5.88        90.08        11.24        12.03 
TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7415 TCGA-CV-7430 TCGA-CV-7440 TCGA-D6-6825 
        7.13        18.81        22.85        16.27        21.99         5.00 
TCGA-D6-8569 TCGA-DQ-7592 TCGA-F7-7848 
        4.18         9.83         1.15 

$`19P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.91         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 
       10.42        11.21         4.21        28.60        32.88        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
        9.27        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
       43.23        40.96        13.32        24.43         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
        5.46        20.52         4.70        21.86        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12       111.12        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.03         4.18         3.45        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 
       11.84        12.13        12.10        10.65         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              1.15               0.07 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             90.08             210.94 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            10.190             14.825 
[1] "1.1 - 90.1 (10.2)"  "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      2   25
  19P LOSS WILD-TYPE   88  206
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                2                 88
  MALE                 25                206
                    vv
clus                 T1 T2 T3 T4
  19P LOSS MUTATED    1  6 10  7
  19P LOSS WILD-TYPE 27 75 55 97
D73V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1                1                 27
  T2                6                 75
  T3               10                 55
  T4                7                 97
                    vv
clus                 N0 N1 N2 N3
  19P LOSS MUTATED   12  4  4  1
  19P LOSS WILD-TYPE 95 32 95  4
D73V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               12                 95
  N1                4                 32
  N2                4                 95
  N3                1                  4
D73V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5    0
  19P LOSS WILD-TYPE   54    6
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0                5                 54
  MX                0                  6
                    vv
clus                   I  II III  IV
  19P LOSS MUTATED     1   5   8   9
  19P LOSS WILD-TYPE  19  46  37 148
D73V7, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                  1                 19
  II                 5                 46
  III                8                 37
  IV                 9                148
D73V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5   22
  19P LOSS WILD-TYPE   71  223
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 5                 71
  YES               22                223
D73V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P LOSS MUTATED                                             8
  19P LOSS WILD-TYPE                                          76
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P LOSS MUTATED                                        3             12
  19P LOSS WILD-TYPE                                     54             91
                    vv
clus                 LIFELONG NON-SMOKER
  19P LOSS MUTATED                     3
  19P LOSS WILD-TYPE                  63
D73V10, multiclass
                                             clus
vv                                            19P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                            12
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            19P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              91
  LIFELONG NON-SMOKER                                         63
D73V11, continuous
D73V12, continuous

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    10  10
  19Q LOSS WILD-TYPE 186 111
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                20                297 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                10                111 
$`19Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-CN-4725 TCGA-CN-5363 TCGA-CN-6992 
        5.00        14.79         2.07        10.19         8.28         2.73 
TCGA-CN-6997 TCGA-CQ-6220 TCGA-CR-7365 TCGA-CR-7370 TCGA-CV-6441 TCGA-CV-6933 
        3.29        32.35        39.12         3.42         5.88        90.08 
TCGA-CV-6941 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7430 
       11.24         7.13        28.31        36.13        22.85        16.27 
TCGA-D6-6517 TCGA-D6-8569 
        8.22         4.18 

$`19Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       53.75        57.44         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         3.91         3.68         3.75         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       33.80        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 
       12.46        11.51        15.75         9.27        47.18        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       13.32        24.43         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
       10.98         8.38         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97         2.10        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90         3.48        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25        10.68         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.03         4.18         3.45        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              2.07               0.07 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             90.08             210.94 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             9.235             14.330 
[1] "2.1 - 90.1 (9.2)"   "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      2   18
  19Q LOSS WILD-TYPE   88  213
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                2                 88
  MALE                 18                213
                    vv
clus                 T1 T2 T3 T4
  19Q LOSS MUTATED    0  2  9  5
  19Q LOSS WILD-TYPE 28 79 56 99
D74V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                0                 28
  T2                2                 79
  T3                9                 56
  T4                5                 99
                    vv
clus                 N0 N1 N2 N3
  19Q LOSS MUTATED   10  2  3  1
  19Q LOSS WILD-TYPE 97 34 96  4
D74V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               10                 97
  N1                2                 34
  N2                3                 96
  N3                1                  4
D74V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      3    0
  19Q LOSS WILD-TYPE   56    6
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0                3                 56
  MX                0                  6
                    vv
clus                   I  II III  IV
  19Q LOSS MUTATED     0   2   7   7
  19Q LOSS WILD-TYPE  20  49  38 150
D74V7, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                  0                 20
  II                 2                 49
  III                7                 38
  IV                 7                150
D74V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      5   15
  19Q LOSS WILD-TYPE   71  230
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 5                 71
  YES               15                230
D74V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q LOSS MUTATED                                            10
  19Q LOSS WILD-TYPE                                          74
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q LOSS MUTATED                                        0              6
  19Q LOSS WILD-TYPE                                     57             97
                    vv
clus                 LIFELONG NON-SMOKER
  19Q LOSS MUTATED                     2
  19Q LOSS WILD-TYPE                  64
D74V10, multiclass
                                             clus
vv                                            19Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     0
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            19Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      57
  CURRENT SMOKER                                              97
  LIFELONG NON-SMOKER                                         64
D74V11, continuous
D74V12, continuous

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    14   7
  20P LOSS WILD-TYPE 182 114
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                21                296 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                114 
$`20P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5555 TCGA-BA-6871 TCGA-BA-6873 
       15.16        13.64        37.28         6.12         2.07         3.72 
TCGA-BB-4227 TCGA-BB-7866 TCGA-BB-8601 TCGA-CN-6011 TCGA-CN-6992 TCGA-CN-6995 
        4.37        20.98        20.52         7.50         2.73         3.68 
TCGA-CR-6473 TCGA-CR-7364 TCGA-CR-7374 TCGA-CV-5440 TCGA-CV-7104 TCGA-CV-7247 
       36.99        47.18         0.99        89.82        12.89        18.97 
TCGA-CV-7418 TCGA-D6-6823 TCGA-DQ-7590 
       25.94         7.82        21.73 

$`20P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30         9.07         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
        5.88         7.96        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       14.79        12.99         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.60        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 
       37.87        14.04        14.33        71.05         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         3.91         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
        7.66        12.46        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       29.23        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.02         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25        10.68         8.22         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        18.02        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.99               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             89.82             210.94 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            13.640             14.185 
[1] "1.0 - 89.8 (13.6)"  "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   18
  20P LOSS WILD-TYPE   87  213
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                3                 87
  MALE                 18                213
                    vv
clus                 T1 T2 T3 T4
  20P LOSS MUTATED    0  3  5  7
  20P LOSS WILD-TYPE 28 78 60 97
D75V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                0                 28
  T2                3                 78
  T3                5                 60
  T4                7                 97
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED     6   1   8   0
  20P LOSS WILD-TYPE 101  35  91   5
D75V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                6                101
  N1                1                 35
  N2                8                 91
  N3                0                  5
D75V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3    1
  20P LOSS WILD-TYPE   56    5
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0                3                 56
  MX                1                  5
                    vv
clus                   I  II III  IV
  20P LOSS MUTATED     0   1   3  11
  20P LOSS WILD-TYPE  20  50  42 146
D75V7, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                  0                 20
  II                 1                 50
  III                3                 42
  IV                11                146
D75V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      4   17
  20P LOSS WILD-TYPE   72  228
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 4                 72
  YES               17                228
D75V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P LOSS MUTATED                                             8
  20P LOSS WILD-TYPE                                          76
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P LOSS MUTATED                                        2              9
  20P LOSS WILD-TYPE                                     55             94
                    vv
clus                 LIFELONG NON-SMOKER
  20P LOSS MUTATED                     2
  20P LOSS WILD-TYPE                  64
D75V10, multiclass
                                             clus
vv                                            20P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            20P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              94
  LIFELONG NON-SMOKER                                         64
D75V11, continuous
D75V12, continuous

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     8   2
  20Q LOSS WILD-TYPE 188 119
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                10                307 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                119 
$`20Q LOSS MUTATED`
TCGA-BA-6871 TCGA-BB-7866 TCGA-BB-8601 TCGA-CN-5360 TCGA-CR-6473 TCGA-CR-7402 
        2.07        20.98        20.52        28.47        36.99        29.92 
TCGA-CV-5440 TCGA-CV-7247 TCGA-CV-7418 TCGA-DQ-7590 
       89.82        18.97        25.94        21.73 

$`20Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 
       37.87        14.04        14.33        71.05         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.02         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.45         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        18.90        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              2.07               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             89.82             210.94 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            23.835             13.580 
[1] "2.1 - 89.8 (23.8)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "2.6"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   10
  20Q LOSS WILD-TYPE   90  221
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                0                 90
  MALE                 10                221
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     0   0   2   3
  20Q LOSS WILD-TYPE  28  81  63 101
D76V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                0                 28
  T2                0                 81
  T3                2                 63
  T4                3                101
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED     2   1   2   0
  20Q LOSS WILD-TYPE 105  35  97   5
D76V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                2                105
  N1                1                 35
  N2                2                 97
  N3                0                  5
D76V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      1    1
  20Q LOSS WILD-TYPE   58    5
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0                1                 58
  MX                1                  5
                    vv
clus                   I  II III  IV
  20Q LOSS MUTATED     0   0   2   3
  20Q LOSS WILD-TYPE  20  51  43 154
D76V7, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                  0                 20
  II                 0                 51
  III                2                 43
  IV                 3                154
D76V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      2    8
  20Q LOSS WILD-TYPE   74  237
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 2                 74
  YES                8                237
D76V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q LOSS MUTATED                                             5
  20Q LOSS WILD-TYPE                                          79
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q LOSS MUTATED                                        1              3
  20Q LOSS WILD-TYPE                                     56            100
                    vv
clus                 LIFELONG NON-SMOKER
  20Q LOSS MUTATED                     1
  20Q LOSS WILD-TYPE                  65
D76V10, multiclass
                                             clus
vv                                            20Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            20Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                             100
  LIFELONG NON-SMOKER                                         65
D76V11, continuous
D76V12, continuous

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    35  21
  21Q LOSS WILD-TYPE 161 100
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                56                261 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                21                100 
$`21Q LOSS MUTATED`
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6871 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-8601 
       53.75         5.00         2.07        17.59        23.61        20.52 
TCGA-CN-4737 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-6010 TCGA-CN-6994 TCGA-CN-6997 
        7.89         8.28        11.54         6.81         3.91         3.29 
TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6220 TCGA-CQ-6223 
       48.16         2.93        29.46        10.42        32.35        34.75 
TCGA-CQ-6225 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6491 
       13.25        45.27        33.07        29.59        11.77        11.51 
TCGA-CR-7365 TCGA-CR-7369 TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5439 TCGA-CV-5440 
       39.12        35.84        27.02         5.92        17.95        89.82 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6941 
       33.11         7.07        43.23        40.96         2.14        11.24 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 
        7.13         8.38         2.50         4.14       126.12        12.66 
TCGA-CV-7103 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7254 TCGA-CV-7261 
       52.31        10.75        36.00        26.20        47.97        36.13 
TCGA-CV-7409 TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 
       17.82       142.49        10.39         7.76        10.68        16.96 
TCGA-HD-7229 TCGA-HD-7753 
        0.07         0.16 

$`21Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       10.19        13.87        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       71.05         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
        9.17         9.50         5.69        12.39        28.47        16.21 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
        1.38         5.82         2.73         3.68         3.75         1.51 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 
       39.68        21.50        38.89        27.65        33.80        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
        4.21        28.60        32.88        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       26.76        48.03        16.70        22.78        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64         7.66        12.46        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.18        47.34        40.90         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
      108.33        47.28        19.20        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88        90.08         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
       65.82        10.98        28.31        64.80       111.12        18.81 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23         1.84        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       71.21       114.94        56.68         4.73        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        58.06        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       21.99        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 
        1.15         0.46         0.43         0.99         1.87         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            142.49             210.94 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            15.105             14.040 
[1] "0.1 - 142.5 (15.1)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     11   46
  21Q LOSS WILD-TYPE   79  185
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               11                 79
  MALE                 46                185
                    vv
clus                 T1 T2 T3 T4
  21Q LOSS MUTATED    3 16 17 15
  21Q LOSS WILD-TYPE 25 65 48 89
D77V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1                3                 25
  T2               16                 65
  T3               17                 48
  T4               15                 89
                    vv
clus                 N0 N1 N2 N3
  21Q LOSS MUTATED   18  5 19  4
  21Q LOSS WILD-TYPE 89 31 80  1
D77V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               18                 89
  N1                5                 31
  N2               19                 80
  N3                4                  1
D77V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      6    2
  21Q LOSS WILD-TYPE   53    4
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0                6                 53
  MX                2                  4
                    vv
clus                   I  II III  IV
  21Q LOSS MUTATED     3   9  10  29
  21Q LOSS WILD-TYPE  17  42  35 128
D77V7, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                  3                 17
  II                 9                 42
  III               10                 35
  IV                29                128
D77V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     13   44
  21Q LOSS WILD-TYPE   63  201
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                13                 63
  YES               44                201
D77V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q LOSS MUTATED                                            15
  21Q LOSS WILD-TYPE                                          69
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q LOSS MUTATED                                       10             19
  21Q LOSS WILD-TYPE                                     47             84
                    vv
clus                 LIFELONG NON-SMOKER
  21Q LOSS MUTATED                    11
  21Q LOSS WILD-TYPE                  55
D77V10, multiclass
                                             clus
vv                                            21Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               15
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    10
  CURRENT SMOKER                                            19
  LIFELONG NON-SMOKER                                       11
                                             clus
vv                                            21Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 69
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      47
  CURRENT SMOKER                                              84
  LIFELONG NON-SMOKER                                         55
D77V11, continuous
D77V12, continuous

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    17   8
  22Q LOSS WILD-TYPE 179 113
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                25                292 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                113 
$`22Q LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6871 TCGA-BB-4224 TCGA-BB-7861 TCGA-CN-4725 
        8.15        53.75         2.07         9.04        10.19        10.19 
TCGA-CN-4730 TCGA-CN-5370 TCGA-CN-6995 TCGA-CQ-7065 TCGA-CR-6493 TCGA-CR-7373 
       11.28         8.52         3.68        33.07         9.27        29.23 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5973 TCGA-CV-6441 TCGA-CV-6962 TCGA-CV-7413 
        5.13         5.92        57.07         5.88         4.14         9.67 
TCGA-CV-7421 TCGA-CX-7086 TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7593 
        0.07         7.76         4.18        18.02         9.83        12.13 
TCGA-IQ-7630 
        5.26 

$`22Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 
       27.78        57.90         6.12         5.88         7.96        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        6.12        95.05         4.60         4.37        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       71.05        20.52         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68         5.46        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
       16.21        11.54        11.84        11.57        12.49        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       45.27        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.42         3.06        24.95         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       30.54         7.10        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       40.96        13.32        24.43        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         0.46        22.85        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.39        10.55        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.45        37.78        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7594 TCGA-DQ-7595 
       14.04        18.90        21.73        11.84        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99        22.75         4.01         3.72 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.07               0.07 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             57.07             210.94 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              9.04              15.42 
[1] "0.1 - 57.1 (9.0)"   "0.1 - 210.9 (15.4)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-DQ-5624 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5625         TCGA-DQ-5629         TCGA-DQ-5630 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-DQ-7592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DQ-7593         TCGA-DQ-7594         TCGA-DQ-7595 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H7-7774         TCGA-H7-8501         TCGA-HD-7229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HL-7533         TCGA-IQ-7630 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      4   21
  22Q LOSS WILD-TYPE   86  210
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE                4                 86
  MALE                 21                210
                    vv
clus                 T1 T2 T3 T4
  22Q LOSS MUTATED    1  7  7  5
  22Q LOSS WILD-TYPE 27 74 58 99
D78V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1                1                 27
  T2                7                 74
  T3                7                 58
  T4                5                 99
                    vv
clus                 N0 N1 N2 N3
  22Q LOSS MUTATED   10  5  4  0
  22Q LOSS WILD-TYPE 97 31 95  5
D78V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               10                 97
  N1                5                 31
  N2                4                 95
  N3                0                  5
D78V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      4    0
  22Q LOSS WILD-TYPE   55    6
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0                4                 55
  MX                0                  6
                    vv
clus                   I  II III  IV
  22Q LOSS MUTATED     0   6   5   9
  22Q LOSS WILD-TYPE  20  45  40 148
D78V7, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                  0                 20
  II                 6                 45
  III                5                 40
  IV                 9                148
D78V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      5   20
  22Q LOSS WILD-TYPE   71  225
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 5                 71
  YES               20                225
D78V9, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q LOSS MUTATED                                             6
  22Q LOSS WILD-TYPE                                          78
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q LOSS MUTATED                                        3              9
  22Q LOSS WILD-TYPE                                     54             94
                    vv
clus                 LIFELONG NON-SMOKER
  22Q LOSS MUTATED                     7
  22Q LOSS WILD-TYPE                  59
D78V10, multiclass
                                             clus
vv                                            22Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        7
                                             clus
vv                                            22Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              94
  LIFELONG NON-SMOKER                                         59
D78V11, continuous
D78V12, continuous

Clustering(79) Variable = Xq loss mutation analysis
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     4   3
  XQ LOSS WILD-TYPE 192 118
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                7               310 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3               118 
$`XQ LOSS MUTATED`
TCGA-BA-4078 TCGA-CN-4725 TCGA-CQ-6218 TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7398 
        9.07        10.19        28.60        17.13        29.82         5.13 
TCGA-CV-7255 
        2.10 

$`XQ LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
        0.99        31.96        34.06        19.92        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             2.10              0.07 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            29.82            210.94 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           10.190            14.185 
[1] "2.1 - 29.8 (10.2)"  "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-DQ-5624 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-H7-7774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314        TCGA-HD-8634 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8635        TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      4    3
  XQ LOSS WILD-TYPE   86  228
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               4                86
  MALE                 3               228
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED     1   2   1   2
  XQ LOSS WILD-TYPE  27  79  64 102
D79V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               1                27
  T2               2                79
  T3               1                64
  T4               2               102
                   vv
clus                 N0  N1  N2  N3
  XQ LOSS MUTATED     5   0   1   0
  XQ LOSS WILD-TYPE 102  36  98   5
D79V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0               5               102
  N1               0                36
  N2               1                98
  N3               0                 5
D79V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    0
  XQ LOSS WILD-TYPE   57    6
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0               2                57
  MX               0                 6
                   vv
clus                  I  II III  IV
  XQ LOSS MUTATED     1   2   0   3
  XQ LOSS WILD-TYPE  19  49  45 154
D79V7, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 1                19
  II                2                49
  III               0                45
  IV                3               154
D79V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    5
  XQ LOSS WILD-TYPE   74  240
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                2                74
  YES               5               240
D79V9, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ LOSS MUTATED                                             2
  XQ LOSS WILD-TYPE                                          82
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ LOSS MUTATED                                        0              3
  XQ LOSS WILD-TYPE                                     57            100
                   vv
clus                LIFELONG NON-SMOKER
  XQ LOSS MUTATED                     2
  XQ LOSS WILD-TYPE                  64
D79V10, multiclass
                                             clus
vv                                            XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                57
  CURRENT SMOKER                                            3               100
  LIFELONG NON-SMOKER                                       2                64
D79V11, continuous
D79V12, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                           "PATHOLOGY.T" 
                                      V5 
                           "PATHOLOGY.N" 
                                      V6 
                   "PATHOLOGICSPREAD(M)" 
                                      V7 
                           "TUMOR.STAGE" 
                                      V8 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V9 
                 "NUMBERPACKYEARSSMOKED" 
                                     V10 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V11 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V12 
                 "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
