GDAC_MergedClusteringPipeline Execution Log 9:03 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2904042/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
GDAC_mergedClustering1 mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/KIRP-TP/2904044/3.GDAC_selectBestcluster.Finished/KIRP-TP.bestclus.txt
GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2860905/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2906629/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile KIRP-TP
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2900730/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRP-TP/2859844/3.GDAC_selectBestcluster.Finished/KIRP-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2860158/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRP-TP/2860167/3.GDAC_selectBestcluster.Finished/KIRP-TP.bestclus.txt
Execution Times:
Submitted: 09:03:55 09-04-13
Completed:
Elapsed: 00 hrs 55 mins 53 secs

step 1. GDAC_mergedClustering [id: 375051] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2904042/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/KIRP-TP/2904044/3.GDAC_selectBestcluster.Finished/KIRP-TP.bestclus.txt
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2860905/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2906629/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
mergedfile KIRP-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2900730/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRP-TP/2859844/3.GDAC_selectBestcluster.Finished/KIRP-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRP-TP/2860158/3.GDAC_CNMFselectcluster.Finished/KIRP-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRP-TP/2860167/3.GDAC_selectBestcluster.Finished/KIRP-TP.bestclus.txt
Output Files:
 KIRP-TP.mergedcluster.txt
 .lsf.out
 KIRP-TP.transferedmergedcluster.txt
 stdout.txt
Execution Times:
Submitted: 09:03:55 09-04-13
Completed: 09:04:13 09-04-13
Elapsed: 00 hrs 00 mins 17 secs

step 2. GDAC_mergedReport [id: 375052]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster KIRP-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 09:03:55 09-04-13
Completed: 09:59:47 09-04-13
Elapsed: 00 hrs 55 mins 51 secs