
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/373057/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/KIRP-TP/2843150/1.GDAC_clinicalDataPicker.Finished/KIRP-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRP-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRP-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=104, in cluster file=127, common to both=104
[1] "Reduce the number of clustering variables from 34 to 33."
[1]  33 104
[1] "Amp Peak 1(2q32.1) mutation analysis"
[1] 3
  AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE 
                          20                           84 
  AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE 
                          20                           84 
[1] "Amp Peak 2(3p14.1) mutation analysis"
[1] 3
  AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE 
                          27                           77 
  AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE 
                          27                           77 
[1] "Amp Peak 3(3q26.31) mutation analysis"
[1] 3
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                           32                            72 
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                           32                            72 
[1] "Amp Peak 4(5q35.2) mutation analysis"
[1] 3
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                          14                           90 
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                          14                           90 
[1] "Amp Peak 5(6p12.3) mutation analysis"
[1] 3
  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                           4                          100 
  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                           4                          100 
[1] "Amp Peak 6(7q22.1) mutation analysis"
[1] 3
  AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE 
                          59                           45 
  AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE 
                          59                           45 
[1] "Amp Peak 7(17q25.2) mutation analysis"
[1] 3
  AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE 
                           70                            34 
  AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE 
                           70                            34 
[1] "Amp Peak 8(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE 
                           13                            91 
  AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE 
                           13                            91 
[1] "Amp Peak 9(19q13.11) mutation analysis"
[1] 3
  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                             4                            100 
  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                             4                            100 
[1] "Del Peak  1(1p36.31) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            22                             82 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            22                             82 
[1] "Del Peak  2(2p11.2) mutation analysis"
[1] 3
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            3                           101 
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            3                           101 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            5                            99 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            5                            99 
[1] "Del Peak  4(3p22.1) mutation analysis"
[1] 3
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            7                            97 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            7                            97 
[1] "Del Peak  5(4q33) mutation analysis"
[1] 3
  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                         13                          91 
  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                         13                          91 
[1] "Del Peak  6(5p15.2) mutation analysis"
[1] 3
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                            6                            98 
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                            6                            98 
[1] "Del Peak  7(5q15) mutation analysis"
[1] 3
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          8                          96 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          8                          96 
[1] "Del Peak  8(5q35.2) mutation analysis"
[1] 3
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            8                            96 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            8                            96 
[1] "Del Peak  9(6p12.3) mutation analysis"
[1] 3
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           11                            93 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           11                            93 
[1] "Del Peak 10(6q22.31) mutation analysis"
[1] 3
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            12                             92 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            12                             92 
[1] "Del Peak 11(6q26) mutation analysis"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         12                          92 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         12                          92 
[1] "Del Peak 12(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           17                            87 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           17                            87 
[1] "Del Peak 13(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                             5                             99 
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                             5                             99 
[1] "Del Peak 14(11q22.3) mutation analysis"
[1] 3
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                            11                             93 
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                            11                             93 
[1] "Del Peak 16(14q11.2) mutation analysis"
[1] 3
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                            24                             80 
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                            24                             80 
[1] "Del Peak 17(14q23.3) mutation analysis"
[1] 3
  DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE 
                            23                             81 
  DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE 
                            23                             81 
[1] "Del Peak 18(14q32.2) mutation analysis"
[1] 3
  DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE 
                            23                             81 
  DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE 
                            23                             81 
[1] "Del Peak 19(15q14) mutation analysis"
[1] 3
  DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE 
                          14                           90 
  DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE 
                          14                           90 
[1] "Del Peak 20(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                             8                             96 
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                             8                             96 
[1] "Del Peak 21(19q13.2) mutation analysis"
[1] 3
  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                             7                             97 
  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                             7                             97 
[1] "Del Peak 22(19q13.42) mutation analysis"
[1] 3
  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                              8                              96 
  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                              8                              96 
[1] "Del Peak 23(22q12.2) mutation analysis"
[1] 3
  DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE 
                            29                             75 
  DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE 
                            29                             75 
[1] "Del Peak 24(Xq21.31) mutation analysis"
[1] 3
  DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE 
                            16                             88 
  DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE 
                            16                             88 
[1] "Del Peak 25(Xq28) mutation analysis"
[1] 3
  DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE 
                         15                          89 
  DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE 
                         15                          89 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 104 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7584 TCGA-A4-7585 
           1           21          485            3           NA           NA 
TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7828 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 
           1           27           NA            7           49          140 
TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
         293         1778         1636          412          922          763 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 
        1357          336          223          109          125          179 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
         135          147         1536           21          329           92 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 
          14           33           19          196           36         2638 
TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 
         585          269         1938          697         1313         1454 
TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
         658         1242          792          921          792          771 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
         403          329          232           29          364          240 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
          84         3759           NA         2948         2839           NA 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
        1864         1532         1516          799          612           NA 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
         232          213          217          115          353          414 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
        3950         1093         1142          744          418          114 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
         445           92         2428         2459         1556         1856 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 
        1669          471          178          160          208          977 
TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 
        1257           NA          928         1059          387          445 
TCGA-G7-7502 TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 TCGA-HE-7128 TCGA-HE-7129 
         428         5558           NA          112           NA           NA 
TCGA-HE-7130 TCGA-J7-6720 
          NA           NA 
Variable 1:'AGE':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=86,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE" "PATHOLOGY.T"                
[5] "PATHOLOGY.N"                 "PATHOLOGICSPREAD(M)"        
[7] "TUMOR.STAGE"                
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
53  7 24  9 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 104 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=39, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=4, binary=FALSE, numeric=TRUE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
58 13 32  1 
[1] "table(vv)"
vv
   T1    T2 T3+T4 
   58    13    33 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
58 13 32  1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   T1    T2 T3+T4 
   58    13    33 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
20 12  4 
[1] "table(vv)"
vv
N0 N1 N2 
20 12  4 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 
20 12  4 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
20 12  4 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 53   7  24   9 
[1] "table(vv)"
vv
  I  II III  IV 
 53   7  24   9 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 53   7  24   9 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 53   7  24   9 

Clustering(1) Variable = Amp Peak 1(2q32.1) mutation analysis
D1V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 1(2Q32.1) MUTATED   16  4
  AMP PEAK 1(2Q32.1) WILD-TYPE 67 10
  AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE 
                          20                           77 
  AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE 
                           4                           10 
$`AMP PEAK 1(2Q32.1) MUTATED`
TCGA-A4-7585 TCGA-AL-3466 TCGA-AL-3471 TCGA-AL-7173 TCGA-B1-7332 TCGA-B9-4117 
       35.18         9.63        13.55        44.61         7.33         0.46 
TCGA-BQ-5878 TCGA-BQ-5885 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7046 
       63.72        30.28        11.97         7.89         2.76        96.92 
TCGA-DW-5561 TCGA-DZ-6131 TCGA-DZ-6133 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6795 
       13.61        79.82        51.16         6.84        32.12        30.51 
TCGA-G7-7502 TCGA-GL-7966 
       14.07         3.68 

$`AMP PEAK 1(2Q32.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7732 TCGA-A4-7734 
        0.03         0.69        15.95         0.10         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3472 
        0.23         1.61         4.60        58.45        53.79        30.31 
TCGA-AL-3473 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 
       25.08        11.05         3.58         4.11         5.88         4.44 
TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4617 
        4.83        50.50         0.69        10.82         3.02         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 
        0.62         6.44         1.18        86.73        19.23         8.84 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       22.92        43.17        47.80        21.63        40.83        26.04 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 
       26.04        25.35        13.25        10.82         7.63         0.95 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
      123.58        48.26        93.34        44.84        61.28        50.37 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       49.84        26.27        20.12        11.28         7.63         7.00 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        7.13         3.78        11.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 
       24.46        13.74         3.75        14.63         3.02        80.84 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6792 
       61.02        54.87        15.48         5.85         5.26        41.33 
TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-GL-6846 
       11.05        34.82        12.72        14.63       182.73 

  AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE 
                        0.46                         0.03 
  AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE 
                       96.92                       182.73 
  AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE 
                       13.84                        13.74 
[1] "0.5 - 96.9 (13.8)"  "0.0 - 182.7 (13.7)"
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 1(2Q32.1) MUTATED"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 1(2Q32.1) MUTATED"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-GL-7966 
  "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 1(2Q32.1) MUTATED"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 1(2Q32.1) MUTATED"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-GL-7966 
  "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 1(2Q32.1) MUTATED"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 1(2Q32.1) WILD-TYPE"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 1(2Q32.1) MUTATED"   "AMP PEAK 1(2Q32.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 1(2Q32.1) WILD-TYPE" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "AMP PEAK 1(2Q32.1) MUTATED" "AMP PEAK 1(2Q32.1) WILD-TYPE" 
                  TCGA-GL-7966 
  "AMP PEAK 1(2Q32.1) MUTATED" 
[1] "hr=" "1.4"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 1(2Q32.1) MUTATED      7   13
  AMP PEAK 1(2Q32.1) WILD-TYPE   27   57
        clus
vv       AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE
  FEMALE                          7                           27
  MALE                           13                           57
D1V4, continuous
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 1(2Q32.1) MUTATED    8  2    10
  AMP PEAK 1(2Q32.1) WILD-TYPE 50 11    23
D1V5, multiclass
       clus
vv      AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE
  T1                             8                           50
  T2                             2                           11
  T3+T4                         10                           23
                              vv
clus                           N0 N1 N2
  AMP PEAK 1(2Q32.1) MUTATED    5  5  2
  AMP PEAK 1(2Q32.1) WILD-TYPE 15  7  2
D1V6, multiclass
    clus
vv   AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE
  N0                          5                           15
  N1                          5                            7
  N2                          2                            2
                              vv
clus                           M0 M1 MX
  AMP PEAK 1(2Q32.1) MUTATED    8  3  8
  AMP PEAK 1(2Q32.1) WILD-TYPE 46  2 28
D1V7, multiclass
    clus
vv   AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE
  M0                          8                           46
  M1                          3                            2
  MX                          8                           28
                              vv
clus                            I II III IV
  AMP PEAK 1(2Q32.1) MUTATED    8  1   5  5
  AMP PEAK 1(2Q32.1) WILD-TYPE 45  6  19  4
D1V8, multiclass
     clus
vv    AMP PEAK 1(2Q32.1) MUTATED AMP PEAK 1(2Q32.1) WILD-TYPE
  I                            8                           45
  II                           1                            6
  III                          5                           19
  IV                           5                            4

Clustering(2) Variable = Amp Peak 2(3p14.1) mutation analysis
D2V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 2(3P14.1) MUTATED   21  3
  AMP PEAK 2(3P14.1) WILD-TYPE 62 11
  AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE 
                          24                           73 
  AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE 
                           3                           11 
$`AMP PEAK 2(3P14.1) MUTATED`
TCGA-A4-7287 TCGA-AL-3468 TCGA-AL-3471 TCGA-B1-7332 TCGA-B3-4103 TCGA-B9-4113 
        0.69        53.79        13.55         7.33         5.88        50.50 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5881 
        0.46         1.08         0.62         6.44         1.18        47.80 
TCGA-BQ-5886 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7060 TCGA-BQ-7062 TCGA-DW-5560 
       26.04        48.26        96.92         7.00         3.78        11.61 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DZ-6133 TCGA-G7-6790 TCGA-GL-6846 
       35.93        37.55        24.46        51.16        32.12       182.73 

$`AMP PEAK 2(3P14.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.03        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3472 
        0.23         1.61         4.60         9.63        58.45        30.31 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4104 
       25.08        44.61        11.05         3.58         4.11         4.44 
TCGA-B3-8121 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-BQ-5875 TCGA-BQ-5876 
        4.83         0.69        10.82         3.02        86.73        19.23 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5882 TCGA-BQ-5883 
        8.84        63.72        22.92        43.17        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 
       26.04        30.28        25.35        13.25        10.82         7.63 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7048 
        0.95        11.97         7.89         2.76       123.58        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.37        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7061 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7839 
       11.28         7.63         7.13        13.61       129.86        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6134 
        3.75        14.63         3.02        79.82        80.84        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6792 
       54.87        15.48         5.85         5.26         6.84        41.33 
TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 
       11.05        30.51        34.82        12.72        14.63        14.07 
TCGA-GL-7966 
        3.68 

  AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE 
                        0.46                         0.03 
  AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE 
                      182.73                       129.86 
  AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE 
                      19.005                       13.740 
[1] "0.5 - 182.7 (19.0)" "0.0 - 129.9 (13.7)"
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-5560                   TCGA-DW-5561 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-7837                   TCGA-DW-7838 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-GL-7966 
"AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-5560                   TCGA-DW-5561 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-7837                   TCGA-DW-7838 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-GL-7966 
"AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-5560                   TCGA-DW-5561 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-7837                   TCGA-DW-7838 
  "AMP PEAK 2(3P14.1) MUTATED"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 2(3P14.1) MUTATED" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 2(3P14.1) WILD-TYPE" "AMP PEAK 2(3P14.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 2(3P14.1) WILD-TYPE"   "AMP PEAK 2(3P14.1) MUTATED" 
                  TCGA-GL-7966 
"AMP PEAK 2(3P14.1) WILD-TYPE" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 2(3P14.1) MUTATED      6   21
  AMP PEAK 2(3P14.1) WILD-TYPE   28   49
        clus
vv       AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE
  FEMALE                          6                           28
  MALE                           21                           49
D2V4, continuous
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 2(3P14.1) MUTATED   18  5     4
  AMP PEAK 2(3P14.1) WILD-TYPE 40  8    29
D2V5, multiclass
       clus
vv      AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE
  T1                            18                           40
  T2                             5                            8
  T3+T4                          4                           29
                              vv
clus                           N0 N1 N2
  AMP PEAK 2(3P14.1) MUTATED    2  1  0
  AMP PEAK 2(3P14.1) WILD-TYPE 18 11  4
D2V6, multiclass
    clus
vv   AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE
  N0                          2                           18
  N1                          1                           11
  N2                          0                            4
                              vv
clus                           M0 M1 MX
  AMP PEAK 2(3P14.1) MUTATED   13  0  9
  AMP PEAK 2(3P14.1) WILD-TYPE 41  5 27
D2V7, multiclass
    clus
vv   AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE
  M0                         13                           41
  M1                          0                            5
  MX                          9                           27
                              vv
clus                            I II III IV
  AMP PEAK 2(3P14.1) MUTATED   17  2   3  1
  AMP PEAK 2(3P14.1) WILD-TYPE 36  5  21  8
D2V8, multiclass
     clus
vv    AMP PEAK 2(3P14.1) MUTATED AMP PEAK 2(3P14.1) WILD-TYPE
  I                           17                           36
  II                           2                            5
  III                          3                           21
  IV                           1                            8

Clustering(3) Variable = Amp Peak 3(3q26.31) mutation analysis
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 3(3Q26.31) MUTATED   26  3
  AMP PEAK 3(3Q26.31) WILD-TYPE 57 11
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                           29                            68 
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                            3                            11 
$`AMP PEAK 3(3Q26.31) MUTATED`
TCGA-A4-7287 TCGA-AL-3468 TCGA-AL-3471 TCGA-B1-7332 TCGA-B3-4103 TCGA-B9-4114 
        0.69        53.79        13.55         7.33         5.88         0.69 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5881 
        0.46         1.08         0.62         6.44         1.18        47.80 
TCGA-BQ-5886 TCGA-BQ-5890 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7060 TCGA-BQ-7062 
       26.04         7.63        48.26        96.92         7.00         3.78 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       35.93        37.55        24.46        79.82        80.84        51.16 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-G7-6790 TCGA-G7-6793 TCGA-GL-6846 
       54.87        15.48        32.12        11.05       182.73 

$`AMP PEAK 3(3Q26.31) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.03        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3472 
        0.23         1.61         4.60         9.63        58.45        30.31 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4104 
       25.08        44.61        11.05         3.58         4.11         4.44 
TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4115 TCGA-B9-4116 TCGA-BQ-5875 TCGA-BQ-5876 
        4.83        50.50        10.82         3.02        86.73        19.23 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5882 TCGA-BQ-5883 
        8.84        63.72        22.92        43.17        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5891 
       26.04        30.28        25.35        13.25        10.82         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7048 TCGA-BQ-7049 
       11.97         7.89         2.76       123.58        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7061 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7839 
        7.63         7.13        11.61        13.61       129.86        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6134 TCGA-EV-5902 TCGA-EV-5903 
        3.75        14.63         3.02        61.02         5.85         5.26 
TCGA-G7-6789 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 
        6.84        41.33        30.51        34.82        12.72        14.63 
TCGA-G7-7502 TCGA-GL-7966 
       14.07         3.68 

  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                         0.46                          0.03 
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                       182.73                        129.86 
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                       15.480                        13.675 
[1] "0.5 - 182.7 (15.5)" "0.0 - 129.9 (13.7)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-7837                    TCGA-DW-7838 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-GL-7966 
"AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-7837                    TCGA-DW-7838 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-GL-7966 
"AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-7837                    TCGA-DW-7838 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 3(3Q26.31) MUTATED" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
  "AMP PEAK 3(3Q26.31) MUTATED"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 3(3Q26.31) WILD-TYPE" "AMP PEAK 3(3Q26.31) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 3(3Q26.31) WILD-TYPE"   "AMP PEAK 3(3Q26.31) MUTATED" 
                   TCGA-GL-7966 
"AMP PEAK 3(3Q26.31) WILD-TYPE" 
[1] "hr=" "2"  
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 3(3Q26.31) MUTATED      7   25
  AMP PEAK 3(3Q26.31) WILD-TYPE   27   45
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  FEMALE                           7                            27
  MALE                            25                            45
D3V4, continuous
                               vv
clus                            T1 T2 T3+T4
  AMP PEAK 3(3Q26.31) MUTATED   19  6     7
  AMP PEAK 3(3Q26.31) WILD-TYPE 39  7    26
D3V5, multiclass
       clus
vv      AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  T1                             19                            39
  T2                              6                             7
  T3+T4                           7                            26
                               vv
clus                            N0 N1 N2
  AMP PEAK 3(3Q26.31) MUTATED    4  1  1
  AMP PEAK 3(3Q26.31) WILD-TYPE 16 11  3
D3V6, multiclass
    clus
vv   AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  N0                           4                            16
  N1                           1                            11
  N2                           1                             3
                               vv
clus                            M0 M1 MX
  AMP PEAK 3(3Q26.31) MUTATED   14  0 13
  AMP PEAK 3(3Q26.31) WILD-TYPE 40  5 23
D3V7, multiclass
    clus
vv   AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  M0                          14                            40
  M1                           0                             5
  MX                          13                            23
                               vv
clus                             I II III IV
  AMP PEAK 3(3Q26.31) MUTATED   18  2   5  2
  AMP PEAK 3(3Q26.31) WILD-TYPE 35  5  19  7
D3V8, multiclass
     clus
vv    AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  I                            18                            35
  II                            2                             5
  III                           5                            19
  IV                            2                             7

Clustering(4) Variable = Amp Peak 4(5q35.2) mutation analysis
D4V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 4(5Q35.2) MUTATED   12  1
  AMP PEAK 4(5Q35.2) WILD-TYPE 71 13
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                          13                           84 
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                           1                           13 
$`AMP PEAK 4(5Q35.2) MUTATED`
TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3473 TCGA-B1-5398 TCGA-B9-4117 TCGA-BQ-5878 
        4.60         9.63        25.08        11.05         0.46        63.72 
TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-DW-7838 TCGA-EV-5902 
       25.35         7.63         0.95        11.97        24.46         5.85 
TCGA-G7-6789 
        6.84 

$`AMP PEAK 4(5Q35.2) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
        0.03         0.69        15.95         0.10        35.18         0.03 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 
        0.89         0.23         1.61        58.45        53.79        13.55 
TCGA-AL-3472 TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 
       30.31        44.61         7.33         3.58         4.11         5.88 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
        4.44         4.83        50.50         0.69        10.82         3.02 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 
        1.08         0.62         6.44         1.18        86.73        19.23 
TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
        8.84        22.92        43.17        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5893 
       26.04        30.28        26.04        13.25        10.82         7.89 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        2.76       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.00         7.13         3.78        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
      129.86        35.93        37.55        13.74         3.75        14.63 
TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
        3.02        79.82        80.84        51.16        61.02        54.87 
TCGA-EV-5901 TCGA-EV-5903 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 
       15.48         5.26        32.12        41.33        11.05        30.51 
TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-6846 TCGA-GL-7966 
       34.82        12.72        14.63        14.07       182.73         3.68 

  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                        0.46                         0.03 
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                       63.72                       182.73 
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                        9.63                        14.63 
[1] "0.5 - 63.7 (9.6)"   "0.0 - 182.7 (14.6)"
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
  "AMP PEAK 4(5Q35.2) MUTATED"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-GL-7966 
"AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
  "AMP PEAK 4(5Q35.2) MUTATED"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-GL-7966 
"AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
  "AMP PEAK 4(5Q35.2) MUTATED"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 4(5Q35.2) WILD-TYPE"   "AMP PEAK 4(5Q35.2) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 4(5Q35.2) MUTATED" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 4(5Q35.2) WILD-TYPE" "AMP PEAK 4(5Q35.2) WILD-TYPE" 
                  TCGA-GL-7966 
"AMP PEAK 4(5Q35.2) WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 4(5Q35.2) MUTATED      4   10
  AMP PEAK 4(5Q35.2) WILD-TYPE   30   60
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  FEMALE                          4                           30
  MALE                           10                           60
D4V4, continuous
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 4(5Q35.2) MUTATED    5  2     7
  AMP PEAK 4(5Q35.2) WILD-TYPE 53 11    26
D4V5, multiclass
       clus
vv      AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  T1                             5                           53
  T2                             2                           11
  T3+T4                          7                           26
                              vv
clus                           N0 N1 N2
  AMP PEAK 4(5Q35.2) MUTATED    5  3  1
  AMP PEAK 4(5Q35.2) WILD-TYPE 15  9  3
D4V6, multiclass
    clus
vv   AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  N0                          5                           15
  N1                          3                            9
  N2                          1                            3
                              vv
clus                           M0 M1 MX
  AMP PEAK 4(5Q35.2) MUTATED    8  1  4
  AMP PEAK 4(5Q35.2) WILD-TYPE 46  4 32
D4V7, multiclass
    clus
vv   AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  M0                          8                           46
  M1                          1                            4
  MX                          4                           32
                              vv
clus                            I II III IV
  AMP PEAK 4(5Q35.2) MUTATED    5  1   5  2
  AMP PEAK 4(5Q35.2) WILD-TYPE 48  6  19  7
D4V8, multiclass
     clus
vv    AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  I                            5                           48
  II                           1                            6
  III                          5                           19
  IV                           2                            7

Clustering(5) Variable = Amp Peak 5(6p12.3) mutation analysis
D5V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 5(6P12.3) MUTATED    3  1
  AMP PEAK 5(6P12.3) WILD-TYPE 80 13
  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                           4                           93 
  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                           1                           13 
$`AMP PEAK 5(6P12.3) MUTATED`
TCGA-BQ-5893 TCGA-BQ-7048 TCGA-DW-5561 TCGA-GL-7966 
        7.89        93.34        13.61         3.68 

$`AMP PEAK 5(6P12.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
        0.03         0.69        15.95         0.10        35.18         0.03 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 
        0.89         0.23         1.61         4.60         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.31        25.08        44.61        11.05 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
        7.33         3.58         4.11         5.88         4.44         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50         0.69        10.82         3.02         0.46         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 
        0.62         6.44         1.18        86.73        19.23         8.84 
TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
       63.72        22.92        43.17        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       26.04        30.28        26.04        25.35        13.25        10.82 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 
        7.63         0.95        11.97         2.76       123.58        48.26 
TCGA-BQ-7046 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       96.92        44.84        61.28        50.37        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 
       20.12        11.28         7.63         7.00         7.13         3.78 
TCGA-DW-5560 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       11.61       129.86        35.93        37.55        24.46        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
        3.75        14.63         3.02        79.82        80.84        51.16 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 
       61.02        54.87        15.48         5.85         5.26         6.84 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
       32.12        41.33        11.05        30.51        34.82        12.72 
TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-6846 
       14.63        14.07       182.73 

  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                        3.68                         0.03 
  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                       93.34                       182.73 
  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                       10.75                        14.07 
[1] "3.7 - 93.3 (10.8)"  "0.0 - 182.7 (14.1)"
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"AMP PEAK 5(6P12.3) WILD-TYPE"   "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
  "AMP PEAK 5(6P12.3) MUTATED" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 5(6P12.3) WILD-TYPE"   "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-GL-7966 
  "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"AMP PEAK 5(6P12.3) WILD-TYPE"   "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
  "AMP PEAK 5(6P12.3) MUTATED" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 5(6P12.3) WILD-TYPE"   "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-GL-7966 
  "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"AMP PEAK 5(6P12.3) WILD-TYPE"   "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
  "AMP PEAK 5(6P12.3) MUTATED" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"AMP PEAK 5(6P12.3) WILD-TYPE"   "AMP PEAK 5(6P12.3) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-GL-7966 
  "AMP PEAK 5(6P12.3) MUTATED" 
[1] "hr=" "1.8"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 5(6P12.3) MUTATED      1    3
  AMP PEAK 5(6P12.3) WILD-TYPE   33   67
        clus
vv       AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE
  FEMALE                          1                           33
  MALE                            3                           67
D5V4, continuous
[1] "Remove cluster labels:"     "AMP PEAK 5(6P12.3) MUTATED"
clus
  AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE 
                           1                           21 
                  TCGA-A4-7286                   TCGA-A4-7828 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-DW-5560 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-EV-5901                   TCGA-EV-5902 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-EV-5903                   TCGA-G7-6790 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6793                   TCGA-G7-6796 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 5(6P12.3) WILD-TYPE" "AMP PEAK 5(6P12.3) WILD-TYPE" 
                  TCGA-G7-7502 
"AMP PEAK 5(6P12.3) WILD-TYPE" 
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 5(6P12.3) MUTATED    1  0     3
  AMP PEAK 5(6P12.3) WILD-TYPE 57 13    30
D5V5, multiclass
       clus
vv      AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE
  T1                             1                           57
  T2                             0                           13
  T3+T4                          3                           30
                              vv
clus                           N0 N1 N2
  AMP PEAK 5(6P12.3) MUTATED    1  2  0
  AMP PEAK 5(6P12.3) WILD-TYPE 19 10  4
D5V6, multiclass
    clus
vv   AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE
  N0                          1                           19
  N1                          2                           10
  N2                          0                            4
                              vv
clus                           M0 M1 MX
  AMP PEAK 5(6P12.3) MUTATED    2  1  1
  AMP PEAK 5(6P12.3) WILD-TYPE 52  4 35
D5V7, multiclass
    clus
vv   AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE
  M0                          2                           52
  M1                          1                            4
  MX                          1                           35
                              vv
clus                            I II III IV
  AMP PEAK 5(6P12.3) MUTATED    1  0   2  1
  AMP PEAK 5(6P12.3) WILD-TYPE 52  7  22  8
D5V8, multiclass
     clus
vv    AMP PEAK 5(6P12.3) MUTATED AMP PEAK 5(6P12.3) WILD-TYPE
  I                            1                           52
  II                           0                            7
  III                          2                           22
  IV                           1                            8

Clustering(6) Variable = Amp Peak 6(7q22.1) mutation analysis
D6V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 6(7Q22.1) MUTATED   50  4
  AMP PEAK 6(7Q22.1) WILD-TYPE 33 10
  AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE 
                          54                           43 
  AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE 
                           4                           10 
$`AMP PEAK 6(7Q22.1) MUTATED`
TCGA-A4-7288 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7996 TCGA-AL-3468 TCGA-AL-3471 
       15.95         0.03         0.89         1.61        53.79        13.55 
TCGA-AL-3472 TCGA-AL-7173 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-8121 TCGA-B9-4113 
       30.31        44.61         3.58         5.88         4.83        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
        0.69        10.82         3.02         0.46         1.08         0.62 
TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5881 TCGA-BQ-5884 TCGA-BQ-5887 TCGA-BQ-5889 
        6.44         1.18        47.80        26.04        25.35        10.82 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 
        0.95        11.97         2.76       123.58        48.26        96.92 
TCGA-BQ-7051 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       50.37         7.63         7.00         7.13         3.78        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7840 
       13.61       129.86        35.93        37.55        24.46         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-EV-5901 
       14.63         3.02        80.84        51.16        61.02        15.48 
TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6795 TCGA-G7-7502 TCGA-GL-6846 
        5.26         6.84        32.12        30.51        14.07       182.73 

$`AMP PEAK 6(7Q22.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7915 TCGA-A4-8098 
        0.03         0.69         0.10        35.18         0.23         4.60 
TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3473 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3926 
        9.63        58.45        25.08        11.05         7.33         4.11 
TCGA-B3-4104 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 
        4.44        86.73        19.23         8.84        63.72        22.92 
TCGA-BQ-5880 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5888 
       43.17        21.63        40.83        30.28        26.04        13.25 
TCGA-BQ-5890 TCGA-BQ-5893 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7053 
        7.63         7.89        93.34        44.84        61.28        49.84 
TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-DW-7839 TCGA-DZ-6131 TCGA-DZ-6135 
       26.27        20.12        11.28        13.74        79.82        54.87 
TCGA-EV-5902 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 
        5.85        41.33        11.05        34.82        12.72        14.63 
TCGA-GL-7966 
        3.68 

  AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE 
                        0.03                         0.03 
  AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE 
                      182.73                        93.34 
  AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE 
                       12.76                        19.23 
[1] "0.0 - 182.7 (12.8)" "0.0 - 93.3 (19.2)" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-A4-7734                   TCGA-A4-7915 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-5560                   TCGA-DW-5561 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7837                   TCGA-DW-7838 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7841                   TCGA-DW-7842 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-GL-7966 
"AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-A4-7734                   TCGA-A4-7915 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-5560                   TCGA-DW-5561 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7837                   TCGA-DW-7838 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7841                   TCGA-DW-7842 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-GL-7966 
"AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-A4-7734                   TCGA-A4-7915 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-AL-3472                   TCGA-AL-3473 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B3-3926                   TCGA-B3-4103 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-5560                   TCGA-DW-5561 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7834                   TCGA-DW-7836 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7837                   TCGA-DW-7838 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DW-7841                   TCGA-DW-7842 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 6(7Q22.1) WILD-TYPE"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 6(7Q22.1) MUTATED" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 6(7Q22.1) WILD-TYPE" "AMP PEAK 6(7Q22.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "AMP PEAK 6(7Q22.1) MUTATED"   "AMP PEAK 6(7Q22.1) MUTATED" 
                  TCGA-GL-7966 
"AMP PEAK 6(7Q22.1) WILD-TYPE" 
[1] "hr=" "2.8"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 6(7Q22.1) MUTATED     15   44
  AMP PEAK 6(7Q22.1) WILD-TYPE   19   26
        clus
vv       AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE
  FEMALE                         15                           19
  MALE                           44                           26
D6V4, continuous
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 6(7Q22.1) MUTATED   39  9    11
  AMP PEAK 6(7Q22.1) WILD-TYPE 19  4    22
D6V5, multiclass
       clus
vv      AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE
  T1                            39                           19
  T2                             9                            4
  T3+T4                         11                           22
                              vv
clus                           N0 N1 N2
  AMP PEAK 6(7Q22.1) MUTATED    8  3  2
  AMP PEAK 6(7Q22.1) WILD-TYPE 12  9  2
D6V6, multiclass
    clus
vv   AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE
  N0                          8                           12
  N1                          3                            9
  N2                          2                            2
                              vv
clus                           M0 M1 MX
  AMP PEAK 6(7Q22.1) MUTATED   27  2 22
  AMP PEAK 6(7Q22.1) WILD-TYPE 27  3 14
D6V7, multiclass
    clus
vv   AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE
  M0                         27                           27
  M1                          2                            3
  MX                         22                           14
                              vv
clus                            I II III IV
  AMP PEAK 6(7Q22.1) MUTATED   37  2   6  5
  AMP PEAK 6(7Q22.1) WILD-TYPE 16  5  18  4
D6V8, multiclass
     clus
vv    AMP PEAK 6(7Q22.1) MUTATED AMP PEAK 6(7Q22.1) WILD-TYPE
  I                           37                           16
  II                           2                            5
  III                          6                           18
  IV                           5                            4

Clustering(7) Variable = Amp Peak 7(17q25.2) mutation analysis
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 7(17Q25.2) MUTATED   56 10
  AMP PEAK 7(17Q25.2) WILD-TYPE 27  4
  AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE 
                           66                            31 
  AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE 
                           10                             4 
$`AMP PEAK 7(17Q25.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
        0.03        15.95        35.18         0.03         0.89         0.23 
TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 
        1.61         4.60         9.63        53.79        13.55        30.31 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 
        7.33         3.58         5.88         4.44         4.83        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
        0.69        10.82         0.46         1.08         0.62         6.44 
TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5886 
        1.18        86.73         8.84        43.17        47.80        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
       25.35        13.25         7.63         0.95        11.97         7.89 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7058 TCGA-BQ-7060 
       48.26        96.92        50.37        49.84        11.28         7.00 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        3.78        11.61        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 
       24.46        13.74         3.75        14.63         3.02        79.82 
TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-EV-5901 TCGA-EV-5903 TCGA-G7-6789 
       80.84        51.16        61.02        15.48         5.26         6.84 
TCGA-G7-6790 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-GL-6846 TCGA-GL-7966 
       32.12        11.05        30.51        34.82       182.73         3.68 

$`AMP PEAK 7(17Q25.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7583 TCGA-AL-3467 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
        0.69         0.10        58.45        25.08        44.61        11.05 
TCGA-B3-3926 TCGA-B9-4116 TCGA-BQ-5876 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5882 
        4.11         3.02        19.23        63.72        22.92        21.63 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5889 TCGA-BQ-5894 TCGA-BQ-7044 
       40.83        26.04        30.28        10.82         2.76       123.58 
TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7059 
       93.34        44.84        61.28        26.27        20.12         7.63 
TCGA-BQ-7061 TCGA-DZ-6135 TCGA-EV-5902 TCGA-G7-6792 TCGA-G7-6797 TCGA-G7-7501 
        7.13        54.87         5.85        41.33        12.72        14.63 
TCGA-G7-7502 
       14.07 

  AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE 
                         0.03                          0.10 
  AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE 
                       182.73                        123.58 
  AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE 
                        11.79                         21.63 
[1] "0.0 - 182.7 (11.8)" "0.1 - 123.6 (21.6)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7996                    TCGA-A4-8098 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-AL-3466                    TCGA-AL-3467 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-AL-3472                    TCGA-AL-3473 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-5560                    TCGA-DW-5561 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7837                    TCGA-DW-7838 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7839                    TCGA-DW-7840 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-GL-7966 
  "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7996                    TCGA-A4-8098 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-AL-3466                    TCGA-AL-3467 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-AL-3472                    TCGA-AL-3473 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-5560                    TCGA-DW-5561 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7837                    TCGA-DW-7838 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7839                    TCGA-DW-7840 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-GL-7966 
  "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-A4-7996                    TCGA-A4-8098 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-AL-3466                    TCGA-AL-3467 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-AL-3472                    TCGA-AL-3473 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
  "AMP PEAK 7(17Q25.2) MUTATED" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-5560                    TCGA-DW-5561 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7837                    TCGA-DW-7838 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7839                    TCGA-DW-7840 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 7(17Q25.2) MUTATED"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 7(17Q25.2) WILD-TYPE" "AMP PEAK 7(17Q25.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 7(17Q25.2) WILD-TYPE"   "AMP PEAK 7(17Q25.2) MUTATED" 
                   TCGA-GL-7966 
  "AMP PEAK 7(17Q25.2) MUTATED" 
[1] "hr=" "1.5"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 7(17Q25.2) MUTATED     18   52
  AMP PEAK 7(17Q25.2) WILD-TYPE   16   18
        clus
vv       AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE
  FEMALE                          18                            16
  MALE                            52                            18
D7V4, continuous
                               vv
clus                            T1 T2 T3+T4
  AMP PEAK 7(17Q25.2) MUTATED   39 11    20
  AMP PEAK 7(17Q25.2) WILD-TYPE 19  2    13
D7V5, multiclass
       clus
vv      AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE
  T1                             39                            19
  T2                             11                             2
  T3+T4                          20                            13
                               vv
clus                            N0 N1 N2
  AMP PEAK 7(17Q25.2) MUTATED   13  6  3
  AMP PEAK 7(17Q25.2) WILD-TYPE  7  6  1
D7V6, multiclass
    clus
vv   AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE
  N0                          13                             7
  N1                           6                             6
  N2                           3                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK 7(17Q25.2) MUTATED   30  3 29
  AMP PEAK 7(17Q25.2) WILD-TYPE 24  2  7
D7V7, multiclass
    clus
vv   AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE
  M0                          30                            24
  M1                           3                             2
  MX                          29                             7
                               vv
clus                             I II III IV
  AMP PEAK 7(17Q25.2) MUTATED   37  5  13  6
  AMP PEAK 7(17Q25.2) WILD-TYPE 16  2  11  3
D7V8, multiclass
     clus
vv    AMP PEAK 7(17Q25.2) MUTATED AMP PEAK 7(17Q25.2) WILD-TYPE
  I                            37                            16
  II                            5                             2
  III                          13                            11
  IV                            6                             3

Clustering(8) Variable = Amp Peak 8(19p13.2) mutation analysis
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 8(19P13.2) MUTATED   11  1
  AMP PEAK 8(19P13.2) WILD-TYPE 72 13
  AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE 
                           12                            85 
  AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE 
                            1                            13 
$`AMP PEAK 8(19P13.2) MUTATED`
TCGA-A4-7732 TCGA-AL-3472 TCGA-B9-4113 TCGA-B9-4116 TCGA-B9-4617 TCGA-BQ-5891 
        0.03        30.31        50.50         3.02         1.08         0.95 
TCGA-BQ-5892 TCGA-DW-5561 TCGA-DW-7840 TCGA-EV-5901 TCGA-G7-6795 TCGA-GL-7966 
       11.97        13.61         3.75        15.48        30.51         3.68 

$`AMP PEAK 8(19P13.2) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7734 
        0.03         0.69        15.95         0.10        35.18         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.23         1.61         4.60         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 
       13.55        25.08        44.61        11.05         7.33         3.58 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4114 TCGA-B9-4115 
        4.11         5.88         4.44         4.83         0.69        10.82 
TCGA-B9-4117 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 
        0.46         0.62         6.44         1.18        86.73        19.23 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
        8.84        63.72        22.92        43.17        47.80        21.63 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 
       40.83        26.04        30.28        26.04        25.35        13.25 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 
       10.82         7.63         7.89         2.76       123.58        48.26 
TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 
       96.92        93.34        44.84        61.28        50.37        49.84 
TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 
       26.27        20.12        11.28         7.63         7.00         7.13 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 
        3.78        11.61       129.86        35.93        37.55        24.46 
TCGA-DW-7839 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       13.74        14.63         3.02        79.82        80.84        51.16 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 
       61.02        54.87         5.85         5.26         6.84        32.12 
TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 
       41.33        11.05        34.82        12.72        14.63        14.07 
TCGA-GL-6846 
      182.73 

  AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE 
                         0.03                          0.03 
  AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE 
                        50.50                        182.73 
  AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE 
                         7.86                         14.63 
[1] "0.0 - 50.5 (7.9)"   "0.0 - 182.7 (14.6)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 8(19P13.2) WILD-TYPE"   "AMP PEAK 8(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 8(19P13.2) MUTATED" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"AMP PEAK 8(19P13.2) WILD-TYPE" "AMP PEAK 8(19P13.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "AMP PEAK 8(19P13.2) MUTATED" 
[1] "hr=" "1"  
D8V2, continuous
D8V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 8(19P13.2) MUTATED      4    9
  AMP PEAK 8(19P13.2) WILD-TYPE   30   61
        clus
vv       AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE
  FEMALE                           4                            30
  MALE                             9                            61
D8V4, continuous
                               vv
clus                            T1 T2 T3+T4
  AMP PEAK 8(19P13.2) MUTATED    7  4     2
  AMP PEAK 8(19P13.2) WILD-TYPE 51  9    31
D8V5, multiclass
       clus
vv      AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE
  T1                              7                            51
  T2                              4                             9
  T3+T4                           2                            31
                               vv
clus                            N0 N1 N2
  AMP PEAK 8(19P13.2) MUTATED    3  1  0
  AMP PEAK 8(19P13.2) WILD-TYPE 17 11  4
D8V6, multiclass
    clus
vv   AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE
  N0                           3                            17
  N1                           1                            11
  N2                           0                             4
                               vv
clus                            M0 M1 MX
  AMP PEAK 8(19P13.2) MUTATED    6  0  4
  AMP PEAK 8(19P13.2) WILD-TYPE 48  5 32
D8V7, multiclass
    clus
vv   AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE
  M0                           6                            48
  M1                           0                             5
  MX                           4                            32
                               vv
clus                             I II III IV
  AMP PEAK 8(19P13.2) MUTATED    7  0   2  0
  AMP PEAK 8(19P13.2) WILD-TYPE 46  7  22  9
D8V8, multiclass
     clus
vv    AMP PEAK 8(19P13.2) MUTATED AMP PEAK 8(19P13.2) WILD-TYPE
  I                             7                            46
  II                            0                             7
  III                           2                            22
  IV                            0                             9

Clustering(9) Variable = Amp Peak 9(19q13.11) mutation analysis
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 9(19Q13.11) MUTATED    4  0
  AMP PEAK 9(19Q13.11) WILD-TYPE 79 14
  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                             4                             93 
  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                             0                             14 
$`AMP PEAK 9(19Q13.11) MUTATED`
TCGA-BQ-5892 TCGA-BQ-7048 TCGA-DW-7836 TCGA-GL-7966 
       11.97        93.34        35.93         3.68 

$`AMP PEAK 9(19Q13.11) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
        0.03         0.69        15.95         0.10        35.18         0.03 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 
        0.89         0.23         1.61         4.60         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.31        25.08        44.61        11.05 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
        7.33         3.58         4.11         5.88         4.44         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50         0.69        10.82         3.02         0.46         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 
        0.62         6.44         1.18        86.73        19.23         8.84 
TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
       63.72        22.92        43.17        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       26.04        30.28        26.04        25.35        13.25        10.82 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 
        7.63         0.95         7.89         2.76       123.58        48.26 
TCGA-BQ-7046 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       96.92        44.84        61.28        50.37        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 
       20.12        11.28         7.63         7.00         7.13         3.78 
TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       11.61        13.61       129.86        37.55        24.46        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
        3.75        14.63         3.02        79.82        80.84        51.16 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 
       61.02        54.87        15.48         5.85         5.26         6.84 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
       32.12        41.33        11.05        30.51        34.82        12.72 
TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-6846 
       14.63        14.07       182.73 

  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                          3.68                           0.03 
  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                         93.34                         182.73 
  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                         23.95                          13.74 
[1] "3.7 - 93.3 (23.9)"  "0.0 - 182.7 (13.7)"
                    TCGA-A4-7286                     TCGA-A4-7287 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
  "AMP PEAK 9(19Q13.11) MUTATED" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
  "AMP PEAK 9(19Q13.11) MUTATED" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"AMP PEAK 9(19Q13.11) WILD-TYPE"   "AMP PEAK 9(19Q13.11) MUTATED" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-GL-7966 
  "AMP PEAK 9(19Q13.11) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
  "AMP PEAK 9(19Q13.11) MUTATED" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
  "AMP PEAK 9(19Q13.11) MUTATED" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"AMP PEAK 9(19Q13.11) WILD-TYPE"   "AMP PEAK 9(19Q13.11) MUTATED" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-GL-7966 
  "AMP PEAK 9(19Q13.11) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
  "AMP PEAK 9(19Q13.11) MUTATED" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
  "AMP PEAK 9(19Q13.11) MUTATED" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"AMP PEAK 9(19Q13.11) WILD-TYPE"   "AMP PEAK 9(19Q13.11) MUTATED" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-GL-7966 
  "AMP PEAK 9(19Q13.11) MUTATED" 
[1] "hr="     "7.2e+07"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 9(19Q13.11) MUTATED      1    3
  AMP PEAK 9(19Q13.11) WILD-TYPE   33   67
        clus
vv       AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE
  FEMALE                            1                             33
  MALE                              3                             67
D9V4, continuous
[1] "Remove cluster labels:"       "AMP PEAK 9(19Q13.11) MUTATED"
clus
  AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE 
                             1                             21 
                    TCGA-A4-7286                     TCGA-A4-7828 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-DW-5560 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-EV-5901                     TCGA-EV-5902 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-EV-5903                     TCGA-G7-6790 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6793                     TCGA-G7-6796 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"AMP PEAK 9(19Q13.11) WILD-TYPE" "AMP PEAK 9(19Q13.11) WILD-TYPE" 
                    TCGA-G7-7502 
"AMP PEAK 9(19Q13.11) WILD-TYPE" 
                                vv
clus                             T1 T2 T3+T4
  AMP PEAK 9(19Q13.11) MUTATED    2  0     2
  AMP PEAK 9(19Q13.11) WILD-TYPE 56 13    31
D9V5, multiclass
       clus
vv      AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE
  T1                               2                             56
  T2                               0                             13
  T3+T4                            2                             31
                                vv
clus                             N0 N1 N2
  AMP PEAK 9(19Q13.11) MUTATED    2  1  0
  AMP PEAK 9(19Q13.11) WILD-TYPE 18 11  4
D9V6, multiclass
    clus
vv   AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE
  N0                            2                             18
  N1                            1                             11
  N2                            0                              4
                                vv
clus                             M0 M1 MX
  AMP PEAK 9(19Q13.11) MUTATED    2  0  2
  AMP PEAK 9(19Q13.11) WILD-TYPE 52  5 34
D9V7, multiclass
    clus
vv   AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE
  M0                            2                             52
  M1                            0                              5
  MX                            2                             34
                                vv
clus                              I II III IV
  AMP PEAK 9(19Q13.11) MUTATED    2  0   2  0
  AMP PEAK 9(19Q13.11) WILD-TYPE 51  7  22  9
D9V8, multiclass
     clus
vv    AMP PEAK 9(19Q13.11) MUTATED AMP PEAK 9(19Q13.11) WILD-TYPE
  I                              2                             51
  II                             0                              7
  III                            2                             22
  IV                             0                              9

Clustering(10) Variable = Del Peak  1(1p36.31) mutation analysis
D10V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.31) MUTATED   18  4
  DEL PEAK  1(1P36.31) WILD-TYPE 65 10
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            22                             75 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                             4                             10 
$`DEL PEAK  1(1P36.31) MUTATED`
TCGA-A4-7286 TCGA-A4-7583 TCGA-A4-8098 TCGA-AL-3466 TCGA-B1-7332 TCGA-B3-3926 
        0.03         0.10         4.60         9.63         7.33         4.11 
TCGA-B9-4116 TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-BQ-5885 
        3.02        86.73         8.84        22.92        21.63        30.28 
TCGA-BQ-5888 TCGA-BQ-5890 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7055 TCGA-EV-5902 
       13.25         7.63         2.76       123.58        26.27         5.85 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-7966 
       12.72        14.63        14.07         3.68 

$`DEL PEAK  1(1P36.31) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
        0.69        15.95        35.18         0.03         0.89         0.23 
TCGA-A4-7996 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
        1.61        58.45        53.79        13.55        30.31        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
       44.61        11.05         3.58         5.88         4.44         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
       50.50         0.69        10.82         0.46         1.08         0.62 
TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5876 TCGA-BQ-5878 TCGA-BQ-5880 TCGA-BQ-5881 
        6.44         1.18        19.23        63.72        43.17        47.80 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5889 TCGA-BQ-5891 
       40.83        26.04        26.04        25.35        10.82         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
       11.97         7.89        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 
       61.28        50.37        49.84        20.12        11.28         7.63 
TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 
        7.00         7.13         3.78        11.61        13.61       129.86 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
       35.93        37.55        24.46        13.74         3.75        14.63 
TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
        3.02        79.82        80.84        51.16        61.02        54.87 
TCGA-EV-5901 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 
       15.48         5.26         6.84        32.12        41.33        11.05 
TCGA-G7-6795 TCGA-G7-6796 TCGA-GL-6846 
       30.51        34.82       182.73 

  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                        123.58                         182.73 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                         9.235                         15.950 
[1] "0.0 - 123.6 (9.2)"  "0.0 - 182.7 (15.9)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK  1(1P36.31) MUTATED" 
[1] "hr=" "2.5"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.31) MUTATED      8   14
  DEL PEAK  1(1P36.31) WILD-TYPE   26   56
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  FEMALE                            8                             26
  MALE                             14                             56
D10V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK  1(1P36.31) MUTATED    8  2    12
  DEL PEAK  1(1P36.31) WILD-TYPE 50 11    21
D10V5, multiclass
       clus
vv      DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  T1                               8                             50
  T2                               2                             11
  T3+T4                           12                             21
                                vv
clus                             N0 N1 N2
  DEL PEAK  1(1P36.31) MUTATED    5  6  0
  DEL PEAK  1(1P36.31) WILD-TYPE 15  6  4
D10V6, multiclass
    clus
vv   DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  N0                            5                             15
  N1                            6                              6
  N2                            0                              4
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.31) MUTATED   11  3  6
  DEL PEAK  1(1P36.31) WILD-TYPE 43  2 30
D10V7, multiclass
    clus
vv   DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  M0                           11                             43
  M1                            3                              2
  MX                            6                             30
                                vv
clus                              I II III IV
  DEL PEAK  1(1P36.31) MUTATED    7  1   9  3
  DEL PEAK  1(1P36.31) WILD-TYPE 46  6  15  6
D10V8, multiclass
     clus
vv    DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  I                              7                             46
  II                             1                              6
  III                            9                             15
  IV                             3                              6

Clustering(11) Variable = Del Peak  2(2p11.2) mutation analysis
D11V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(2P11.2) MUTATED    3  0
  DEL PEAK  2(2P11.2) WILD-TYPE 80 14
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            3                            94 
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            0                            14 
$`DEL PEAK  2(2P11.2) MUTATED`
TCGA-BQ-5875 TCGA-BQ-5885 TCGA-G7-6792 
       86.73        30.28        41.33 

$`DEL PEAK  2(2P11.2) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
        0.03         0.69        15.95         0.10        35.18         0.03 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 
        0.89         0.23         1.61         4.60         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.31        25.08        44.61        11.05 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
        7.33         3.58         4.11         5.88         4.44         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50         0.69        10.82         3.02         0.46         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 
        0.62         6.44         1.18        19.23         8.84        63.72 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       22.92        43.17        47.80        21.63        40.83        26.04 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 
       26.04        25.35        13.25        10.82         7.63         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 
       11.97         7.89         2.76       123.58        48.26        96.92 
TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       93.34        44.84        61.28        50.37        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 
       20.12        11.28         7.63         7.00         7.13         3.78 
TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 
       11.61        13.61       129.86        35.93        37.55        24.46 
TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 
       13.74         3.75        14.63         3.02        79.82        80.84 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.16        61.02        54.87        15.48         5.85         5.26 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
        6.84        32.12        11.05        30.51        34.82        12.72 
TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-6846 TCGA-GL-7966 
       14.63        14.07       182.73         3.68 

  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                        30.28                          0.03 
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                        86.73                        182.73 
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                        41.33                         13.58 
[1] "30.3 - 86.7 (41.3)" "0.0 - 182.7 (13.6)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
  "DEL PEAK  2(2P11.2) MUTATED" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
  "DEL PEAK  2(2P11.2) MUTATED" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
  "DEL PEAK  2(2P11.2) MUTATED" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  2(2P11.2) WILD-TYPE" 
[1] "hr="     "7.2e+07"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2P11.2) MUTATED      1    2
  DEL PEAK  2(2P11.2) WILD-TYPE   33   68
        clus
vv       DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  FEMALE                           1                            33
  MALE                             2                            68
D11V4, continuous
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK  2(2P11.2) MUTATED    1  0     2
  DEL PEAK  2(2P11.2) WILD-TYPE 57 13    31
D11V5, multiclass
       clus
vv      DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  T1                              1                            57
  T2                              0                            13
  T3+T4                           2                            31
                               vv
clus                            N0 N1 N2
  DEL PEAK  2(2P11.2) MUTATED    1  0  0
  DEL PEAK  2(2P11.2) WILD-TYPE 19 12  4
D11V6, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  2(2P11.2) MUTATED"
clus
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            1                            35 
                   TCGA-A4-7583                    TCGA-A4-7585 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7915                    TCGA-AL-3466 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B9-7268 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7045 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7050 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7056 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-DZ-6131 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6793 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-7501 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-J7-6720 
"DEL PEAK  2(2P11.2) WILD-TYPE" 
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(2P11.2) MUTATED    2  0  1
  DEL PEAK  2(2P11.2) WILD-TYPE 52  5 35
D11V7, multiclass
    clus
vv   DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  M0                           2                            52
  M1                           0                             5
  MX                           1                            35
                               vv
clus                             I II III IV
  DEL PEAK  2(2P11.2) MUTATED    1  0   2  0
  DEL PEAK  2(2P11.2) WILD-TYPE 52  7  22  9
D11V8, multiclass
     clus
vv    DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  I                             1                            52
  II                            0                             7
  III                           2                            22
  IV                            0                             9

Clustering(12) Variable = Del Peak  3(2q37.3) mutation analysis
D12V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.3) MUTATED    3  1
  DEL PEAK  3(2Q37.3) WILD-TYPE 80 13
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            4                            93 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            1                            13 
$`DEL PEAK  3(2Q37.3) MUTATED`
TCGA-A4-7585 TCGA-B3-4104 TCGA-B9-4117 TCGA-BQ-5878 
       35.18         4.44         0.46        63.72 

$`DEL PEAK  3(2Q37.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7732 TCGA-A4-7734 
        0.03         0.69        15.95         0.10         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.23         1.61         4.60         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.31        25.08        44.61        11.05         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
        3.58         4.11         5.88         4.83        50.50         0.69 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
       10.82         3.02         1.08         0.62         6.44         1.18 
TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 
       86.73        19.23         8.84        22.92        43.17        47.80 
TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       21.63        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
       13.25        10.82         7.63         0.95        11.97         7.89 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        2.76       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.00         7.13         3.78        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.74         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
       14.63         3.02        79.82        80.84        51.16        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 
       54.87        15.48         5.85         5.26         6.84        32.12 
TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 
       41.33        11.05        30.51        34.82        12.72        14.63 
TCGA-G7-7502 TCGA-GL-6846 TCGA-GL-7966 
       14.07       182.73         3.68 

  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                         0.46                          0.03 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        63.72                        182.73 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        19.81                         13.74 
[1] "0.5 - 63.7 (19.8)"  "0.0 - 182.7 (13.7)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.6"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED      3    2
  DEL PEAK  3(2Q37.3) WILD-TYPE   31   68
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                           3                            31
  MALE                             2                            68
D12V4, continuous
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK  3(2Q37.3) MUTATED    0  2     3
  DEL PEAK  3(2Q37.3) WILD-TYPE 58 11    30
D12V5, multiclass
       clus
vv      DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  T1                              0                            58
  T2                              2                            11
  T3+T4                           3                            30
                               vv
clus                            N0 N1 N2
  DEL PEAK  3(2Q37.3) MUTATED    1  1  0
  DEL PEAK  3(2Q37.3) WILD-TYPE 19 11  4
D12V6, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2Q37.3) MUTATED"
clus
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            2                            34 
                   TCGA-A4-7583                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3473 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7048 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-G7-6789 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6793                    TCGA-G7-6795 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7501                    TCGA-GL-6846 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-J7-6720 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(2Q37.3) MUTATED    4  0  0
  DEL PEAK  3(2Q37.3) WILD-TYPE 50  5 36
D12V7, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  M0                           4                            50
  M1                           0                             5
  MX                           0                            36
                               vv
clus                             I II III IV
  DEL PEAK  3(2Q37.3) MUTATED    0  1   3  0
  DEL PEAK  3(2Q37.3) WILD-TYPE 53  6  21  9
D12V8, multiclass
     clus
vv    DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  I                             0                            53
  II                            1                             6
  III                           3                            21
  IV                            0                             9

Clustering(13) Variable = Del Peak  4(3p22.1) mutation analysis
D13V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(3P22.1) MUTATED    5  2
  DEL PEAK  4(3P22.1) WILD-TYPE 78 12
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            7                            90 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            2                            12 
$`DEL PEAK  4(3P22.1) MUTATED`
TCGA-AL-3473 TCGA-BQ-5877 TCGA-BQ-5882 TCGA-BQ-5892 TCGA-DZ-6131 TCGA-G7-7501 
       25.08         8.84        21.63        11.97        79.82        14.63 
TCGA-GL-7966 
        3.68 

$`DEL PEAK  4(3P22.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
        0.03         0.69        15.95         0.10        35.18         0.03 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 
        0.89         0.23         1.61         4.60         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       53.79        13.55        30.31        44.61        11.05         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 
        3.58         4.11         5.88         4.44         4.83        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
        0.69        10.82         3.02         0.46         1.08         0.62 
TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5878 TCGA-BQ-5879 
        6.44         1.18        86.73        19.23        63.72        22.92 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       43.17        47.80        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5893 
       25.35        13.25        10.82         7.63         0.95         7.89 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        2.76       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.00         7.13         3.78        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.74         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
       14.63         3.02        80.84        51.16        61.02        54.87 
TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 
       15.48         5.85         5.26         6.84        32.12        41.33 
TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7502 TCGA-GL-6846 
       11.05        30.51        34.82        12.72        14.07       182.73 

  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                         3.68                          0.03 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                        79.82                        182.73 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                       14.630                        13.675 
[1] "3.7 - 79.8 (14.6)"  "0.0 - 182.7 (13.7)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  4(3P22.1) MUTATED" 
[1] "hr=" "2.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P22.1) MUTATED      2    5
  DEL PEAK  4(3P22.1) WILD-TYPE   32   65
        clus
vv       DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  FEMALE                           2                            32
  MALE                             5                            65
D13V4, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(3P22.1) MUTATED"
clus
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            1                            21 
                   TCGA-A4-7286                    TCGA-A4-7828 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-DW-5560 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-EV-5901 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6790                    TCGA-G7-6793 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6796                    TCGA-G7-6797 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-7502 
"DEL PEAK  4(3P22.1) WILD-TYPE" 
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK  4(3P22.1) MUTATED    1  1     5
  DEL PEAK  4(3P22.1) WILD-TYPE 57 12    28
D13V5, multiclass
       clus
vv      DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  T1                              1                            57
  T2                              1                            12
  T3+T4                           5                            28
                               vv
clus                            N0 N1 N2
  DEL PEAK  4(3P22.1) MUTATED    3  4  0
  DEL PEAK  4(3P22.1) WILD-TYPE 17  8  4
D13V6, multiclass
    clus
vv   DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  N0                           3                            17
  N1                           4                             8
  N2                           0                             4
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(3P22.1) MUTATED    3  1  3
  DEL PEAK  4(3P22.1) WILD-TYPE 51  4 33
D13V7, multiclass
    clus
vv   DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  M0                           3                            51
  M1                           1                             4
  MX                           3                            33
                               vv
clus                             I II III IV
  DEL PEAK  4(3P22.1) MUTATED    1  1   4  1
  DEL PEAK  4(3P22.1) WILD-TYPE 52  6  20  8
D13V8, multiclass
     clus
vv    DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  I                             1                            52
  II                            1                             6
  III                           4                            20
  IV                            1                             8

Clustering(14) Variable = Del Peak  5(4q33) mutation analysis
D14V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  5(4Q33) MUTATED   10  2
  DEL PEAK  5(4Q33) WILD-TYPE 73 12
  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                         12                          85 
  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                          2                          12 
$`DEL PEAK  5(4Q33) MUTATED`
TCGA-A4-7287 TCGA-A4-8098 TCGA-AL-3466 TCGA-B1-7332 TCGA-B3-3926 TCGA-B3-4104 
        0.69         4.60         9.63         7.33         4.11         4.44 
TCGA-BQ-5876 TCGA-BQ-5882 TCGA-BQ-5894 TCGA-DZ-6131 TCGA-G7-7501 TCGA-GL-7966 
       19.23        21.63         2.76        79.82        14.63         3.68 

$`DEL PEAK  5(4Q33) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.03        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 
        0.23         1.61        58.45        53.79        13.55        30.31 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-8121 
       25.08        44.61        11.05         3.58         5.88         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50         0.69        10.82         3.02         0.46         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 
        0.62         6.44         1.18        86.73         8.84        63.72 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 
       22.92        43.17        47.80        40.83        26.04        30.28 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 
       26.04        25.35        13.25        10.82         7.63         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
       11.97         7.89       123.58        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.37        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.00         7.13         3.78        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
        3.75        14.63         3.02        80.84        51.16        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 
       54.87        15.48         5.85         5.26         6.84        32.12 
TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7502 
       41.33        11.05        30.51        34.82        12.72        14.07 
TCGA-GL-6846 
      182.73 

  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                       0.69                        0.03 
  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                      79.82                      182.73 
  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                      5.965                      14.630 
[1] "0.7 - 79.8 (6.0)"   "0.0 - 182.7 (14.6)"
                 TCGA-A4-7286                  TCGA-A4-7287 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-AL-3466                  TCGA-AL-3467 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-G7-7502                  TCGA-GL-6846 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-AL-3466                  TCGA-AL-3467 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-G7-7502                  TCGA-GL-6846 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-AL-3466                  TCGA-AL-3467 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  5(4Q33) MUTATED" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  5(4Q33) WILD-TYPE"   "DEL PEAK  5(4Q33) MUTATED" 
                 TCGA-G7-7502                  TCGA-GL-6846 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK  5(4Q33) MUTATED" 
[1] "hr=" "2.7"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q33) MUTATED      6    7
  DEL PEAK  5(4Q33) WILD-TYPE   28   63
        clus
vv       DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE
  FEMALE                         6                          28
  MALE                           7                          63
D14V4, continuous
[1] "Remove cluster labels:"    "DEL PEAK  5(4Q33) MUTATED"
clus
  DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE 
                          2                          20 
                 TCGA-A4-7286                  TCGA-A4-7828 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-EV-5901                  TCGA-EV-5902 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-EV-5903                  TCGA-G7-6790 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6793                  TCGA-G7-6796 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
"DEL PEAK  5(4Q33) WILD-TYPE" "DEL PEAK  5(4Q33) WILD-TYPE" 
                             vv
clus                          T1 T2 T3+T4
  DEL PEAK  5(4Q33) MUTATED    4  2     7
  DEL PEAK  5(4Q33) WILD-TYPE 54 11    26
D14V5, multiclass
       clus
vv      DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE
  T1                            4                          54
  T2                            2                          11
  T3+T4                         7                          26
                             vv
clus                          N0 N1 N2
  DEL PEAK  5(4Q33) MUTATED    2  4  0
  DEL PEAK  5(4Q33) WILD-TYPE 18  8  4
D14V6, multiclass
    clus
vv   DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE
  N0                         2                          18
  N1                         4                           8
  N2                         0                           4
                             vv
clus                          M0 M1 MX
  DEL PEAK  5(4Q33) MUTATED    5  2  6
  DEL PEAK  5(4Q33) WILD-TYPE 49  3 30
D14V7, multiclass
    clus
vv   DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE
  M0                         5                          49
  M1                         2                           3
  MX                         6                          30
                             vv
clus                           I II III IV
  DEL PEAK  5(4Q33) MUTATED    4  2   5  2
  DEL PEAK  5(4Q33) WILD-TYPE 49  5  19  7
D14V8, multiclass
     clus
vv    DEL PEAK  5(4Q33) MUTATED DEL PEAK  5(4Q33) WILD-TYPE
  I                           4                          49
  II                          2                           5
  III                         5                          19
  IV                          2                           7

Clustering(15) Variable = Del Peak  6(5p15.2) mutation analysis
D15V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(5P15.2) MUTATED    3  2
  DEL PEAK  6(5P15.2) WILD-TYPE 80 12
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                            5                            92 
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                            2                            12 
$`DEL PEAK  6(5P15.2) MUTATED`
TCGA-A4-7286 TCGA-BQ-5879 TCGA-BQ-5894 TCGA-G7-6793 TCGA-GL-7966 
        0.03        22.92         2.76        11.05         3.68 

$`DEL PEAK  6(5P15.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.23         1.61         4.60         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.31        25.08        44.61        11.05         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 
        3.58         4.11         5.88         4.44         4.83        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
        0.69        10.82         3.02         0.46         1.08         0.62 
TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 
        6.44         1.18        86.73        19.23         8.84        63.72 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 
       43.17        47.80        21.63        40.83        26.04        30.28 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 
       26.04        25.35        13.25        10.82         7.63         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
       11.97         7.89       123.58        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.37        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.00         7.13         3.78        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
        3.75        14.63         3.02        79.82        80.84        51.16 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 
       61.02        54.87        15.48         5.85         5.26         6.84 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 
       32.12        41.33        30.51        34.82        12.72        14.63 
TCGA-G7-7502 TCGA-GL-6846 
       14.07       182.73 

  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                        22.92                        182.73 
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                         3.68                         14.35 
[1] "0.0 - 22.9 (3.7)"   "0.0 - 182.7 (14.4)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  6(5P15.2) MUTATED" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  6(5P15.2) WILD-TYPE"   "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  6(5P15.2) MUTATED" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  6(5P15.2) WILD-TYPE"   "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  6(5P15.2) MUTATED" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  6(5P15.2) WILD-TYPE"   "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  6(5P15.2) MUTATED" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  6(5P15.2) WILD-TYPE"   "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  6(5P15.2) MUTATED" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  6(5P15.2) WILD-TYPE"   "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  6(5P15.2) MUTATED" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  6(5P15.2) WILD-TYPE"   "DEL PEAK  6(5P15.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  6(5P15.2) MUTATED" 
[1] "hr=" "11" 
D15V2, continuous
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5P15.2) MUTATED      3    3
  DEL PEAK  6(5P15.2) WILD-TYPE   31   67
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  FEMALE                           3                            31
  MALE                             3                            67
D15V4, continuous
[1] "Remove cluster labels:"      "DEL PEAK  6(5P15.2) MUTATED"
clus
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                            2                            20 
                   TCGA-A4-7828                    TCGA-AL-3466 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-EV-5901                    TCGA-EV-5902 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-EV-5903                    TCGA-G7-6790 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-6796                    TCGA-G7-6797 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                   TCGA-G7-7501                    TCGA-G7-7502 
"DEL PEAK  6(5P15.2) WILD-TYPE" "DEL PEAK  6(5P15.2) WILD-TYPE" 
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK  6(5P15.2) MUTATED    0  1     5
  DEL PEAK  6(5P15.2) WILD-TYPE 58 12    28
D15V5, multiclass
       clus
vv      DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  T1                              0                            58
  T2                              1                            12
  T3+T4                           5                            28
                               vv
clus                            N0 N1 N2
  DEL PEAK  6(5P15.2) MUTATED    0  3  1
  DEL PEAK  6(5P15.2) WILD-TYPE 20  9  3
D15V6, multiclass
    clus
vv   DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  N0                           0                            20
  N1                           3                             9
  N2                           1                             3
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(5P15.2) MUTATED    2  1  2
  DEL PEAK  6(5P15.2) WILD-TYPE 52  4 34
D15V7, multiclass
    clus
vv   DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  M0                           2                            52
  M1                           1                             4
  MX                           2                            34
                               vv
clus                             I II III IV
  DEL PEAK  6(5P15.2) MUTATED    1  0   2  2
  DEL PEAK  6(5P15.2) WILD-TYPE 52  7  22  7
D15V8, multiclass
     clus
vv    DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  I                             1                            52
  II                            0                             7
  III                           2                            22
  IV                            2                             7

Clustering(16) Variable = Del Peak  7(5q15) mutation analysis
D16V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  7(5Q15) MUTATED    5  1
  DEL PEAK  7(5Q15) WILD-TYPE 78 13
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          6                          91 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          1                          13 
$`DEL PEAK  7(5Q15) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-BQ-5879 TCGA-BQ-5894 TCGA-DZ-6131 TCGA-GL-7966 
        0.03         0.69        22.92         2.76        79.82         3.68 

$`DEL PEAK  7(5Q15) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       15.95         0.10        35.18         0.03         0.89         0.23 
TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 
        1.61         4.60         9.63        58.45        53.79        13.55 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 
       30.31        25.08        44.61        11.05         7.33         3.58 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
        4.11         5.88         4.44         4.83        50.50         0.69 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       10.82         3.02         0.46         1.08         0.62         6.44 
TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5880 
        1.18        86.73        19.23         8.84        63.72        43.17 
TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       47.80        21.63        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       25.35        13.25        10.82         7.63         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.89       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.00         7.13         3.78        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.74         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
       14.63         3.02        80.84        51.16        61.02        54.87 
TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 
       15.48         5.85         5.26         6.84        32.12        41.33 
TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 
       11.05        30.51        34.82        12.72        14.63        14.07 
TCGA-GL-6846 
      182.73 

  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                       0.03                        0.03 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                      79.82                      182.73 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                       3.22                       14.07 
[1] "0.0 - 79.8 (3.2)"   "0.0 - 182.7 (14.1)"
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-GL-6846 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-GL-6846 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-GL-6846 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK  7(5Q15) MUTATED" 
[1] "hr=" "1.7"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(5Q15) MUTATED      4    4
  DEL PEAK  7(5Q15) WILD-TYPE   30   66
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  FEMALE                         4                          30
  MALE                           4                          66
D16V4, continuous
[1] "Remove cluster labels:"    "DEL PEAK  7(5Q15) MUTATED"
clus
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          1                          21 
                 TCGA-A4-7828                  TCGA-AL-3466 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5901                  TCGA-EV-5902 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5903                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6793                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-7502 
"DEL PEAK  7(5Q15) WILD-TYPE" 
                             vv
clus                          T1 T2 T3+T4
  DEL PEAK  7(5Q15) MUTATED    2  0     6
  DEL PEAK  7(5Q15) WILD-TYPE 56 13    27
D16V5, multiclass
       clus
vv      DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  T1                            2                          56
  T2                            0                          13
  T3+T4                         6                          27
                             vv
clus                          N0 N1 N2
  DEL PEAK  7(5Q15) MUTATED    1  3  0
  DEL PEAK  7(5Q15) WILD-TYPE 19  9  4
D16V6, multiclass
    clus
vv   DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  N0                         1                          19
  N1                         3                           9
  N2                         0                           4
                             vv
clus                          M0 M1 MX
  DEL PEAK  7(5Q15) MUTATED    2  1  4
  DEL PEAK  7(5Q15) WILD-TYPE 52  4 32
D16V7, multiclass
    clus
vv   DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  M0                         2                          52
  M1                         1                           4
  MX                         4                          32
                             vv
clus                           I II III IV
  DEL PEAK  7(5Q15) MUTATED    2  0   4  1
  DEL PEAK  7(5Q15) WILD-TYPE 51  7  20  8
D16V8, multiclass
     clus
vv    DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  I                           2                          51
  II                          0                           7
  III                         4                          20
  IV                          1                           8

Clustering(17) Variable = Del Peak  8(5q35.2) mutation analysis
D17V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(5Q35.2) MUTATED    6  1
  DEL PEAK  8(5Q35.2) WILD-TYPE 77 13
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            7                            90 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            1                            13 
$`DEL PEAK  8(5Q35.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-B3-4104 TCGA-BQ-5879 TCGA-BQ-5894 TCGA-DZ-6131 
        0.03         0.69         4.44        22.92         2.76        79.82 
TCGA-GL-7966 
        3.68 

$`DEL PEAK  8(5Q35.2) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       15.95         0.10        35.18         0.03         0.89         0.23 
TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 
        1.61         4.60         9.63        58.45        53.79        13.55 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 
       30.31        25.08        44.61        11.05         7.33         3.58 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
        4.11         5.88         4.83        50.50         0.69        10.82 
TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
        3.02         0.46         1.08         0.62         6.44         1.18 
TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5880 TCGA-BQ-5881 
       86.73        19.23         8.84        63.72        43.17        47.80 
TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       21.63        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
       13.25        10.82         7.63         0.95        11.97         7.89 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 
      123.58        48.26        96.92        93.34        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 
       50.37        49.84        26.27        20.12        11.28         7.63 
TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 
        7.00         7.13         3.78        11.61        13.61       129.86 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
       35.93        37.55        24.46        13.74         3.75        14.63 
TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
        3.02        80.84        51.16        61.02        54.87        15.48 
TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 
        5.85         5.26         6.84        32.12        41.33        11.05 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-6846 
       30.51        34.82        12.72        14.63        14.07       182.73 

  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                        79.82                        182.73 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                         3.68                         14.35 
[1] "0.0 - 79.8 (3.7)"   "0.0 - 182.7 (14.4)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK  8(5Q35.2) MUTATED" 
[1] "hr=" "1.7"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q35.2) MUTATED      4    4
  DEL PEAK  8(5Q35.2) WILD-TYPE   30   66
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  FEMALE                           4                            30
  MALE                             4                            66
D17V4, continuous
[1] "Remove cluster labels:"      "DEL PEAK  8(5Q35.2) MUTATED"
clus
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            1                            21 
                   TCGA-A4-7828                    TCGA-AL-3466 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5901                    TCGA-EV-5902 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5903                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6793                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7502 
"DEL PEAK  8(5Q35.2) WILD-TYPE" 
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK  8(5Q35.2) MUTATED    1  1     6
  DEL PEAK  8(5Q35.2) WILD-TYPE 57 12    27
D17V5, multiclass
       clus
vv      DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  T1                              1                            57
  T2                              1                            12
  T3+T4                           6                            27
                               vv
clus                            N0 N1 N2
  DEL PEAK  8(5Q35.2) MUTATED    1  3  0
  DEL PEAK  8(5Q35.2) WILD-TYPE 19  9  4
D17V6, multiclass
    clus
vv   DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  N0                           1                            19
  N1                           3                             9
  N2                           0                             4
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(5Q35.2) MUTATED    3  1  3
  DEL PEAK  8(5Q35.2) WILD-TYPE 51  4 33
D17V7, multiclass
    clus
vv   DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  M0                           3                            51
  M1                           1                             4
  MX                           3                            33
                               vv
clus                             I II III IV
  DEL PEAK  8(5Q35.2) MUTATED    1  1   4  1
  DEL PEAK  8(5Q35.2) WILD-TYPE 52  6  20  8
D17V8, multiclass
     clus
vv    DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  I                             1                            52
  II                            1                             6
  III                           4                            20
  IV                            1                             8

Clustering(18) Variable = Del Peak  9(6p12.3) mutation analysis
D18V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(6P12.3) MUTATED    8  2
  DEL PEAK  9(6P12.3) WILD-TYPE 75 12
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           10                            87 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                            2                            12 
$`DEL PEAK  9(6P12.3) MUTATED`
TCGA-A4-7286 TCGA-B3-3926 TCGA-BQ-5882 TCGA-BQ-5890 TCGA-BQ-7048 TCGA-BQ-7056 
        0.03         4.11        21.63         7.63        93.34        20.12 
TCGA-EV-5902 TCGA-G7-6793 TCGA-G7-6797 TCGA-G7-7502 
        5.85        11.05        12.72        14.07 

$`DEL PEAK  9(6P12.3) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.23         1.61         4.60         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.31        25.08        44.61        11.05         7.33 
TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
        3.58         5.88         4.44         4.83        50.50         0.69 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       10.82         3.02         0.46         1.08         0.62         6.44 
TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 
        1.18        86.73        19.23         8.84        63.72        22.92 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       43.17        47.80        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
       25.35        13.25        10.82         0.95        11.97         7.89 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7049 TCGA-BQ-7050 
        2.76       123.58        48.26        96.92        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       50.37        49.84        26.27        11.28         7.63         7.00 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
        7.13         3.78        11.61        13.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.74         3.75        14.63         3.02 
TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       79.82        80.84        51.16        61.02        54.87        15.48 
TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 
        5.26         6.84        32.12        41.33        30.51        34.82 
TCGA-G7-7501 TCGA-GL-6846 TCGA-GL-7966 
       14.63       182.73         3.68 

  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                        93.34                        182.73 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                       11.885                        14.630 
[1] "0.0 - 93.3 (11.9)"  "0.0 - 182.7 (14.6)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  9(6P12.3) WILD-TYPE"   "DEL PEAK  9(6P12.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  9(6P12.3) WILD-TYPE"   "DEL PEAK  9(6P12.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  9(6P12.3) WILD-TYPE"   "DEL PEAK  9(6P12.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  9(6P12.3) WILD-TYPE" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-GL-6846 
  "DEL PEAK  9(6P12.3) MUTATED" "DEL PEAK  9(6P12.3) WILD-TYPE" 
                   TCGA-GL-7966 
"DEL PEAK  9(6P12.3) WILD-TYPE" 
[1] "hr=" "2.3"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P12.3) MUTATED      4    7
  DEL PEAK  9(6P12.3) WILD-TYPE   30   63
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  FEMALE                           4                            30
  MALE                             7                            63
D18V4, continuous
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK  9(6P12.3) MUTATED    4  0     7
  DEL PEAK  9(6P12.3) WILD-TYPE 54 13    26
D18V5, multiclass
       clus
vv      DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  T1                              4                            54
  T2                              0                            13
  T3+T4                           7                            26
                               vv
clus                            N0 N1 N2
  DEL PEAK  9(6P12.3) MUTATED    4  0  1
  DEL PEAK  9(6P12.3) WILD-TYPE 16 12  3
D18V6, multiclass
    clus
vv   DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  N0                           4                            16
  N1                           0                            12
  N2                           1                             3
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(6P12.3) MUTATED    7  0  3
  DEL PEAK  9(6P12.3) WILD-TYPE 47  5 33
D18V7, multiclass
    clus
vv   DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  M0                           7                            47
  M1                           0                             5
  MX                           3                            33
                               vv
clus                             I II III IV
  DEL PEAK  9(6P12.3) MUTATED    3  0   6  1
  DEL PEAK  9(6P12.3) WILD-TYPE 50  7  18  8
D18V8, multiclass
     clus
vv    DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  I                             3                            50
  II                            0                             7
  III                           6                            18
  IV                            1                             8

Clustering(19) Variable = Del Peak 10(6q22.31) mutation analysis
D19V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 10(6Q22.31) MUTATED    8  3
  DEL PEAK 10(6Q22.31) WILD-TYPE 75 11
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            11                             86 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                             3                             11 
$`DEL PEAK 10(6Q22.31) MUTATED`
TCGA-A4-7286 TCGA-B3-3926 TCGA-BQ-5875 TCGA-BQ-5882 TCGA-BQ-5888 TCGA-BQ-5889 
        0.03         4.11        86.73        21.63        13.25        10.82 
TCGA-BQ-7056 TCGA-EV-5902 TCGA-G7-6793 TCGA-G7-7502 TCGA-GL-7966 
       20.12         5.85        11.05        14.07         3.68 

$`DEL PEAK 10(6Q22.31) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.23         1.61         4.60         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.31        25.08        44.61        11.05         7.33 
TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
        3.58         5.88         4.44         4.83        50.50         0.69 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       10.82         3.02         0.46         1.08         0.62         6.44 
TCGA-B9-7268 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 
        1.18        19.23         8.84        63.72        22.92        43.17 
TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       47.80        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 
        7.63         0.95        11.97         7.89         2.76       123.58 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.37 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 
       49.84        26.27        11.28         7.63         7.00         7.13 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        3.78        11.61        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 
       24.46        13.74         3.75        14.63         3.02        79.82 
TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5903 
       80.84        51.16        61.02        54.87        15.48         5.26 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
        6.84        32.12        41.33        30.51        34.82        12.72 
TCGA-G7-7501 TCGA-GL-6846 
       14.63       182.73 

  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                         86.73                         182.73 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                         11.05                          14.63 
[1] "0.0 - 86.7 (11.1)"  "0.0 - 182.7 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 10(6Q22.31) WILD-TYPE"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 10(6Q22.31) MUTATED"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 10(6Q22.31) WILD-TYPE"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 10(6Q22.31) WILD-TYPE"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 10(6Q22.31) MUTATED"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 10(6Q22.31) WILD-TYPE"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 10(6Q22.31) WILD-TYPE"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 10(6Q22.31) MUTATED"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 10(6Q22.31) WILD-TYPE"   "DEL PEAK 10(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 10(6Q22.31) WILD-TYPE" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 10(6Q22.31) MUTATED" "DEL PEAK 10(6Q22.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 10(6Q22.31) MUTATED" 
[1] "hr=" "3.5"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(6Q22.31) MUTATED      7    5
  DEL PEAK 10(6Q22.31) WILD-TYPE   27   65
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  FEMALE                            7                             27
  MALE                              5                             65
D19V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 10(6Q22.31) MUTATED    4  0     8
  DEL PEAK 10(6Q22.31) WILD-TYPE 54 13    25
D19V5, multiclass
       clus
vv      DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  T1                               4                             54
  T2                               0                             13
  T3+T4                            8                             25
                                vv
clus                             N0 N1 N2
  DEL PEAK 10(6Q22.31) MUTATED    3  2  1
  DEL PEAK 10(6Q22.31) WILD-TYPE 17 10  3
D19V6, multiclass
    clus
vv   DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  N0                            3                             17
  N1                            2                             10
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 10(6Q22.31) MUTATED    7  1  3
  DEL PEAK 10(6Q22.31) WILD-TYPE 47  4 33
D19V7, multiclass
    clus
vv   DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  M0                            7                             47
  M1                            1                              4
  MX                            3                             33
                                vv
clus                              I II III IV
  DEL PEAK 10(6Q22.31) MUTATED    4  0   5  2
  DEL PEAK 10(6Q22.31) WILD-TYPE 49  7  19  7
D19V8, multiclass
     clus
vv    DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  I                              4                             49
  II                             0                              7
  III                            5                             19
  IV                             2                              7

Clustering(20) Variable = Del Peak 11(6q26) mutation analysis
D20V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 11(6Q26) MUTATED    9  2
  DEL PEAK 11(6Q26) WILD-TYPE 74 12
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         11                          86 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                          2                          12 
$`DEL PEAK 11(6Q26) MUTATED`
TCGA-A4-7286 TCGA-B3-3926 TCGA-BQ-5875 TCGA-BQ-5882 TCGA-BQ-5888 TCGA-BQ-5890 
        0.03         4.11        86.73        21.63        13.25         7.63 
TCGA-BQ-7056 TCGA-EV-5902 TCGA-G7-6793 TCGA-G7-7502 TCGA-GL-7966 
       20.12         5.85        11.05        14.07         3.68 

$`DEL PEAK 11(6Q26) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.23         1.61         4.60         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.31        25.08        44.61        11.05         7.33 
TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
        3.58         5.88         4.44         4.83        50.50         0.69 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       10.82         3.02         0.46         1.08         0.62         6.44 
TCGA-B9-7268 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 
        1.18        19.23         8.84        63.72        22.92        43.17 
TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       47.80        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5889 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 
       10.82         0.95        11.97         7.89         2.76       123.58 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.37 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 
       49.84        26.27        11.28         7.63         7.00         7.13 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        3.78        11.61        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 
       24.46        13.74         3.75        14.63         3.02        79.82 
TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5903 
       80.84        51.16        61.02        54.87        15.48         5.26 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
        6.84        32.12        41.33        30.51        34.82        12.72 
TCGA-G7-7501 TCGA-GL-6846 
       14.63       182.73 

  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                       0.03                        0.03 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                      86.73                      182.73 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                      11.05                       14.63 
[1] "0.0 - 86.7 (11.1)"  "0.0 - 182.7 (14.6)"
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-GL-6846 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-GL-6846 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-GL-6846 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK 11(6Q26) MUTATED" 
[1] "hr=" "2.3"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED      7    5
  DEL PEAK 11(6Q26) WILD-TYPE   27   65
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  FEMALE                         7                          27
  MALE                           5                          65
D20V4, continuous
                             vv
clus                          T1 T2 T3+T4
  DEL PEAK 11(6Q26) MUTATED    4  0     8
  DEL PEAK 11(6Q26) WILD-TYPE 54 13    25
D20V5, multiclass
       clus
vv      DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  T1                            4                          54
  T2                            0                          13
  T3+T4                         8                          25
                             vv
clus                          N0 N1 N2
  DEL PEAK 11(6Q26) MUTATED    4  1  1
  DEL PEAK 11(6Q26) WILD-TYPE 16 11  3
D20V6, multiclass
    clus
vv   DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  N0                         4                          16
  N1                         1                          11
  N2                         1                           3
                             vv
clus                          M0 M1 MX
  DEL PEAK 11(6Q26) MUTATED    8  0  3
  DEL PEAK 11(6Q26) WILD-TYPE 46  5 33
D20V7, multiclass
    clus
vv   DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  M0                         8                          46
  M1                         0                           5
  MX                         3                          33
                             vv
clus                           I II III IV
  DEL PEAK 11(6Q26) MUTATED    4  0   6  1
  DEL PEAK 11(6Q26) WILD-TYPE 49  7  18  8
D20V8, multiclass
     clus
vv    DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  I                           4                          49
  II                          0                           7
  III                         6                          18
  IV                          1                           8

Clustering(21) Variable = Del Peak 12(9p21.3) mutation analysis
D21V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(9P21.3) MUTATED   11  5
  DEL PEAK 12(9P21.3) WILD-TYPE 72  9
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           16                            81 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                            5                             9 
$`DEL PEAK 12(9P21.3) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-AL-3466 TCGA-B3-3926 TCGA-B9-4116 TCGA-BQ-5877 
        0.03         0.69         9.63         4.11         3.02         8.84 
TCGA-BQ-5879 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-7048 TCGA-BQ-7056 TCGA-DZ-6131 
       22.92        13.25        10.82        93.34        20.12        79.82 
TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-7501 TCGA-GL-7966 
       11.05        34.82        14.63         3.68 

$`DEL PEAK 12(9P21.3) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       15.95         0.10        35.18         0.03         0.89         0.23 
TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 
        1.61         4.60        58.45        53.79        13.55        30.31 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-4103 
       25.08        44.61        11.05         7.33         3.58         5.88 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 
        4.44         4.83        50.50         0.69        10.82         0.46 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 
        1.08         0.62         6.44         1.18        86.73        19.23 
TCGA-BQ-5878 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       63.72        43.17        47.80        21.63        40.83        26.04 
TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       30.28        26.04        25.35         7.63         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7049 
        7.89         2.76       123.58        48.26        96.92        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7058 TCGA-BQ-7059 
       61.28        50.37        49.84        26.27        11.28         7.63 
TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 
        7.00         7.13         3.78        11.61        13.61       129.86 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
       35.93        37.55        24.46        13.74         3.75        14.63 
TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
        3.02        80.84        51.16        61.02        54.87        15.48 
TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 
        5.85         5.26         6.84        32.12        41.33        30.51 
TCGA-G7-6797 TCGA-G7-7502 TCGA-GL-6846 
       12.72        14.07       182.73 

  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                        93.34                        182.73 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                       10.935                        14.630 
[1] "0.0 - 93.3 (10.9)"  "0.0 - 182.7 (14.6)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-8098 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3467 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3468                    TCGA-AL-3471 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-3472                    TCGA-AL-3473 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B1-7332                    TCGA-B3-3925 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B3-3926                    TCGA-B3-4103 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B3-4104                    TCGA-B3-8121 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-GL-6846 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-GL-7966 
  "DEL PEAK 12(9P21.3) MUTATED" 
[1] "hr=" "4"  
D21V2, continuous
D21V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) MUTATED     10    7
  DEL PEAK 12(9P21.3) WILD-TYPE   24   63
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  FEMALE                          10                            24
  MALE                             7                            63
D21V4, continuous
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK 12(9P21.3) MUTATED    4  1    12
  DEL PEAK 12(9P21.3) WILD-TYPE 54 12    21
D21V5, multiclass
       clus
vv      DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  T1                              4                            54
  T2                              1                            12
  T3+T4                          12                            21
                               vv
clus                            N0 N1 N2
  DEL PEAK 12(9P21.3) MUTATED    4  6  1
  DEL PEAK 12(9P21.3) WILD-TYPE 16  6  3
D21V6, multiclass
    clus
vv   DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  N0                           4                            16
  N1                           6                             6
  N2                           1                             3
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(9P21.3) MUTATED    6  3  6
  DEL PEAK 12(9P21.3) WILD-TYPE 48  2 30
D21V7, multiclass
    clus
vv   DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  M0                           6                            48
  M1                           3                             2
  MX                           6                            30
                               vv
clus                             I II III IV
  DEL PEAK 12(9P21.3) MUTATED    4  0   7  4
  DEL PEAK 12(9P21.3) WILD-TYPE 49  7  17  5
D21V8, multiclass
     clus
vv    DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  I                             4                            49
  II                            0                             7
  III                           7                            17
  IV                            4                             5

Clustering(22) Variable = Del Peak 13(10p15.3) mutation analysis
D22V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 13(10P15.3) MUTATED    5  0
  DEL PEAK 13(10P15.3) WILD-TYPE 78 14
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                             5                             92 
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                             0                             14 
$`DEL PEAK 13(10P15.3) MUTATED`
TCGA-BQ-5876 TCGA-DZ-6131 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-7966 
       19.23        79.82        14.63        14.07         3.68 

$`DEL PEAK 13(10P15.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
        0.03         0.69        15.95         0.10        35.18         0.03 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 
        0.89         0.23         1.61         4.60         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.31        25.08        44.61        11.05 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
        7.33         3.58         4.11         5.88         4.44         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50         0.69        10.82         3.02         0.46         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 
        0.62         6.44         1.18        86.73         8.84        63.72 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       22.92        43.17        47.80        21.63        40.83        26.04 
TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 
       30.28        26.04        25.35        13.25        10.82         7.63 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 
        0.95        11.97         7.89         2.76       123.58        48.26 
TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 
       96.92        93.34        44.84        61.28        50.37        49.84 
TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 
       26.27        20.12        11.28         7.63         7.00         7.13 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        3.78        11.61        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 
       24.46        13.74         3.75        14.63         3.02        80.84 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.16        61.02        54.87        15.48         5.85         5.26 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
        6.84        32.12        41.33        11.05        30.51        34.82 
TCGA-G7-6797 TCGA-GL-6846 
       12.72       182.73 

  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                          3.68                           0.03 
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                         79.82                         182.73 
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                         14.63                          13.58 
[1] "3.7 - 79.8 (14.6)"  "0.0 - 182.7 (13.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 13(10P15.3) WILD-TYPE"   "DEL PEAK 13(10P15.3) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 13(10P15.3) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 13(10P15.3) WILD-TYPE"   "DEL PEAK 13(10P15.3) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 13(10P15.3) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 13(10P15.3) WILD-TYPE"   "DEL PEAK 13(10P15.3) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 13(10P15.3) MUTATED" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 13(10P15.3) MUTATED" 
[1] "hr="     "7.2e+07"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(10P15.3) MUTATED      2    3
  DEL PEAK 13(10P15.3) WILD-TYPE   32   67
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  FEMALE                            2                             32
  MALE                              3                             67
D22V4, continuous
[1] "Remove cluster labels:"       "DEL PEAK 13(10P15.3) MUTATED"
clus
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                             2                             20 
                    TCGA-A4-7286                     TCGA-A4-7828 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-DW-5560 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-EV-5901 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6790                     TCGA-G7-6793 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                    TCGA-G7-6796                     TCGA-G7-6797 
"DEL PEAK 13(10P15.3) WILD-TYPE" "DEL PEAK 13(10P15.3) WILD-TYPE" 
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 13(10P15.3) MUTATED    2  0     3
  DEL PEAK 13(10P15.3) WILD-TYPE 56 13    30
D22V5, multiclass
       clus
vv      DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  T1                               2                             56
  T2                               0                             13
  T3+T4                            3                             30
                                vv
clus                             N0 N1 N2
  DEL PEAK 13(10P15.3) MUTATED    1  2  0
  DEL PEAK 13(10P15.3) WILD-TYPE 19 10  4
D22V6, multiclass
    clus
vv   DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  N0                            1                             19
  N1                            2                             10
  N2                            0                              4
                                vv
clus                             M0 M1 MX
  DEL PEAK 13(10P15.3) MUTATED    1  0  4
  DEL PEAK 13(10P15.3) WILD-TYPE 53  5 32
D22V7, multiclass
    clus
vv   DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  M0                            1                             53
  M1                            0                              5
  MX                            4                             32
                                vv
clus                              I II III IV
  DEL PEAK 13(10P15.3) MUTATED    2  0   3  0
  DEL PEAK 13(10P15.3) WILD-TYPE 51  7  21  9
D22V8, multiclass
     clus
vv    DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  I                              2                             51
  II                             0                              7
  III                            3                             21
  IV                             0                              9

Clustering(23) Variable = Del Peak 14(11q22.3) mutation analysis
D23V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(11Q22.3) MUTATED    6  4
  DEL PEAK 14(11Q22.3) WILD-TYPE 77 10
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                            10                             87 
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                             4                             10 
$`DEL PEAK 14(11Q22.3) MUTATED`
TCGA-B1-7332 TCGA-B3-4104 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5882 TCGA-BQ-5889 
        7.33         4.44        19.23         8.84        21.63        10.82 
TCGA-BQ-5890 TCGA-BQ-7044 TCGA-G7-6793 TCGA-G7-7502 
        7.63       123.58        11.05        14.07 

$`DEL PEAK 14(11Q22.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
        0.03         0.69        15.95         0.10        35.18         0.03 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 
        0.89         0.23         1.61         4.60         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.31        25.08        44.61        11.05 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
        3.58         4.11         5.88         4.83        50.50         0.69 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       10.82         3.02         0.46         1.08         0.62         6.44 
TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 
        1.18        86.73        63.72        22.92        43.17        47.80 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 
       40.83        26.04        30.28        26.04        25.35        13.25 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7045 TCGA-BQ-7046 
        0.95        11.97         7.89         2.76        48.26        96.92 
TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       93.34        44.84        61.28        50.37        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 
       20.12        11.28         7.63         7.00         7.13         3.78 
TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 
       11.61        13.61       129.86        35.93        37.55        24.46 
TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 
       13.74         3.75        14.63         3.02        79.82        80.84 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.16        61.02        54.87        15.48         5.85         5.26 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
        6.84        32.12        41.33        30.51        34.82        12.72 
TCGA-G7-7501 TCGA-GL-6846 TCGA-GL-7966 
       14.63       182.73         3.68 

  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                          4.44                           0.03 
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                        123.58                         182.73 
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                        10.935                         14.630 
[1] "4.4 - 123.6 (10.9)" "0.0 - 182.7 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 14(11Q22.3) MUTATED"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 14(11Q22.3) MUTATED"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 14(11Q22.3) MUTATED"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(11Q22.3) WILD-TYPE"   "DEL PEAK 14(11Q22.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 14(11Q22.3) MUTATED" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 14(11Q22.3) WILD-TYPE" 
[1] "hr=" "5.7"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11Q22.3) MUTATED      3    8
  DEL PEAK 14(11Q22.3) WILD-TYPE   31   62
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  FEMALE                            3                             31
  MALE                              8                             62
D23V4, continuous
[1] "Remove cluster labels:"       "DEL PEAK 14(11Q22.3) MUTATED"
clus
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                             2                             20 
                    TCGA-A4-7286                     TCGA-A4-7828 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-DW-5560 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-EV-5901 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6790                     TCGA-G7-6796 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 14(11Q22.3) WILD-TYPE" "DEL PEAK 14(11Q22.3) WILD-TYPE" 
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 14(11Q22.3) MUTATED    2  2     7
  DEL PEAK 14(11Q22.3) WILD-TYPE 56 11    26
D23V5, multiclass
       clus
vv      DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  T1                               2                             56
  T2                               2                             11
  T3+T4                            7                             26
                                vv
clus                             N0 N1 N2
  DEL PEAK 14(11Q22.3) MUTATED    2  2  1
  DEL PEAK 14(11Q22.3) WILD-TYPE 18 10  3
D23V6, multiclass
    clus
vv   DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  N0                            2                             18
  N1                            2                             10
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 14(11Q22.3) MUTATED    6  2  3
  DEL PEAK 14(11Q22.3) WILD-TYPE 48  3 33
D23V7, multiclass
    clus
vv   DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  M0                            6                             48
  M1                            2                              3
  MX                            3                             33
                                vv
clus                              I II III IV
  DEL PEAK 14(11Q22.3) MUTATED    2  2   4  3
  DEL PEAK 14(11Q22.3) WILD-TYPE 51  5  20  6
D23V8, multiclass
     clus
vv    DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  I                              2                             51
  II                             2                              5
  III                            4                             20
  IV                             3                              6

Clustering(24) Variable = Del Peak 16(14q11.2) mutation analysis
D24V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(14Q11.2) MUTATED   19  4
  DEL PEAK 16(14Q11.2) WILD-TYPE 64 10
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                            23                             74 
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                             4                             10 
$`DEL PEAK 16(14Q11.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3473 
        0.03         0.10        35.18         4.60         9.63        25.08 
TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3926 TCGA-B3-4103 TCGA-B9-4116 TCGA-BQ-5876 
       44.61         7.33         4.11         5.88         3.02        19.23 
TCGA-BQ-5885 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5894 TCGA-DW-5560 TCGA-DZ-6131 
       30.28        13.25        10.82         2.76        11.61        79.82 
TCGA-DZ-6132 TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-7501 TCGA-G7-7502 
       80.84        11.05        34.82        14.63        14.07 

$`DEL PEAK 16(14Q11.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
        0.69        15.95         0.03         0.89         0.23         1.61 
TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-B1-5398 TCGA-B3-3925 
       58.45        53.79        13.55        30.31        11.05         3.58 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 
        4.44         4.83        50.50         0.69        10.82         0.46 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5877 
        1.08         0.62         6.44         1.18        86.73         8.84 
TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
       63.72        22.92        43.17        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       26.04        26.04        25.35         7.63         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.89       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5561 TCGA-DW-7834 
        7.63         7.00         7.13         3.78        13.61       129.86 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
       35.93        37.55        24.46        13.74         3.75        14.63 
TCGA-DW-7842 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 
        3.02        51.16        61.02        54.87        15.48         5.85 
TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6797 
        5.26         6.84        32.12        41.33        30.51        12.72 
TCGA-GL-6846 TCGA-GL-7966 
      182.73         3.68 

  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                         80.84                         182.73 
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                        11.610                         15.055 
[1] "0.0 - 80.8 (11.6)"  "0.0 - 182.7 (15.1)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 16(14Q11.2) MUTATED"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 16(14Q11.2) WILD-TYPE" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 16(14Q11.2) WILD-TYPE"   "DEL PEAK 16(14Q11.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 16(14Q11.2) MUTATED" "DEL PEAK 16(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 16(14Q11.2) WILD-TYPE" 
[1] "hr=" "1.9"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(14Q11.2) MUTATED      9   15
  DEL PEAK 16(14Q11.2) WILD-TYPE   25   55
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  FEMALE                            9                             25
  MALE                             15                             55
D24V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 16(14Q11.2) MUTATED   10  3    11
  DEL PEAK 16(14Q11.2) WILD-TYPE 48 10    22
D24V5, multiclass
       clus
vv      DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  T1                              10                             48
  T2                               3                             10
  T3+T4                           11                             22
                                vv
clus                             N0 N1 N2
  DEL PEAK 16(14Q11.2) MUTATED    5  5  2
  DEL PEAK 16(14Q11.2) WILD-TYPE 15  7  2
D24V6, multiclass
    clus
vv   DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  N0                            5                             15
  N1                            5                              7
  N2                            2                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 16(14Q11.2) MUTATED   11  3  8
  DEL PEAK 16(14Q11.2) WILD-TYPE 43  2 28
D24V7, multiclass
    clus
vv   DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  M0                           11                             43
  M1                            3                              2
  MX                            8                             28
                                vv
clus                              I II III IV
  DEL PEAK 16(14Q11.2) MUTATED   10  2   5  5
  DEL PEAK 16(14Q11.2) WILD-TYPE 43  5  19  4
D24V8, multiclass
     clus
vv    DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  I                             10                             43
  II                             2                              5
  III                            5                             19
  IV                             5                              4

Clustering(25) Variable = Del Peak 17(14q23.3) mutation analysis
D25V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(14Q23.3) MUTATED   18  4
  DEL PEAK 17(14Q23.3) WILD-TYPE 65 10
  DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE 
                            22                             75 
  DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE 
                             4                             10 
$`DEL PEAK 17(14Q23.3) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3473 
        0.03         0.69         0.10         4.60         9.63        25.08 
TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3926 TCGA-B9-4116 TCGA-BQ-5876 TCGA-BQ-5880 
       44.61         7.33         4.11         3.02        19.23        43.17 
TCGA-BQ-5885 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5894 TCGA-DZ-6131 TCGA-DZ-6132 
       30.28        13.25        10.82         2.76        79.82        80.84 
TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-7501 TCGA-G7-7502 
       11.05        34.82        14.63        14.07 

$`DEL PEAK 17(14Q23.3) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
       15.95        35.18         0.03         0.89         0.23         1.61 
TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-B1-5398 TCGA-B3-3925 
       58.45        53.79        13.55        30.31        11.05         3.58 
TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
        5.88         4.44         4.83        50.50         0.69        10.82 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 
        0.46         1.08         0.62         6.44         1.18        86.73 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
        8.84        63.72        22.92        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       26.04        26.04        25.35         7.63         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.89       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.00         7.13         3.78        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.74         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       14.63         3.02        51.16        61.02        54.87        15.48 
TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 
        5.85         5.26         6.84        32.12        41.33        30.51 
TCGA-G7-6797 TCGA-GL-6846 TCGA-GL-7966 
       12.72       182.73         3.68 

  DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE 
                         80.84                         182.73 
  DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE 
                         12.15                          14.63 
[1] "0.0 - 80.8 (12.2)"  "0.0 - 182.7 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 17(14Q23.3) MUTATED"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 17(14Q23.3) WILD-TYPE" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 17(14Q23.3) WILD-TYPE"   "DEL PEAK 17(14Q23.3) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 17(14Q23.3) MUTATED" "DEL PEAK 17(14Q23.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 17(14Q23.3) WILD-TYPE" 
[1] "hr=" "1.9"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(14Q23.3) MUTATED      9   14
  DEL PEAK 17(14Q23.3) WILD-TYPE   25   56
        clus
vv       DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE
  FEMALE                            9                             25
  MALE                             14                             56
D25V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 17(14Q23.3) MUTATED    9  3    11
  DEL PEAK 17(14Q23.3) WILD-TYPE 49 10    22
D25V5, multiclass
       clus
vv      DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE
  T1                               9                             49
  T2                               3                             10
  T3+T4                           11                             22
                                vv
clus                             N0 N1 N2
  DEL PEAK 17(14Q23.3) MUTATED    4  6  2
  DEL PEAK 17(14Q23.3) WILD-TYPE 16  6  2
D25V6, multiclass
    clus
vv   DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE
  N0                            4                             16
  N1                            6                              6
  N2                            2                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(14Q23.3) MUTATED    9  3  9
  DEL PEAK 17(14Q23.3) WILD-TYPE 45  2 27
D25V7, multiclass
    clus
vv   DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE
  M0                            9                             45
  M1                            3                              2
  MX                            9                             27
                                vv
clus                              I II III IV
  DEL PEAK 17(14Q23.3) MUTATED    9  2   5  5
  DEL PEAK 17(14Q23.3) WILD-TYPE 44  5  19  4
D25V8, multiclass
     clus
vv    DEL PEAK 17(14Q23.3) MUTATED DEL PEAK 17(14Q23.3) WILD-TYPE
  I                              9                             44
  II                             2                              5
  III                            5                             19
  IV                             5                              4

Clustering(26) Variable = Del Peak 18(14q32.2) mutation analysis
D26V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(14Q32.2) MUTATED   18  4
  DEL PEAK 18(14Q32.2) WILD-TYPE 65 10
  DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE 
                            22                             75 
  DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE 
                             4                             10 
$`DEL PEAK 18(14Q32.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3473 
        0.03         0.69         0.10         4.60         9.63        25.08 
TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3926 TCGA-B9-4116 TCGA-BQ-5876 TCGA-BQ-5880 
       44.61         7.33         4.11         3.02        19.23        43.17 
TCGA-BQ-5885 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5894 TCGA-DZ-6131 TCGA-DZ-6132 
       30.28        13.25        10.82         2.76        79.82        80.84 
TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-7501 TCGA-G7-7502 
       11.05        34.82        14.63        14.07 

$`DEL PEAK 18(14Q32.2) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
       15.95        35.18         0.03         0.89         0.23         1.61 
TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-B1-5398 TCGA-B3-3925 
       58.45        53.79        13.55        30.31        11.05         3.58 
TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
        5.88         4.44         4.83        50.50         0.69        10.82 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 
        0.46         1.08         0.62         6.44         1.18        86.73 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
        8.84        63.72        22.92        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       26.04        26.04        25.35         7.63         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.89       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.00         7.13         3.78        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.74         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       14.63         3.02        51.16        61.02        54.87        15.48 
TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 
        5.85         5.26         6.84        32.12        41.33        30.51 
TCGA-G7-6797 TCGA-GL-6846 TCGA-GL-7966 
       12.72       182.73         3.68 

  DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE 
                         80.84                         182.73 
  DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE 
                         12.15                          14.63 
[1] "0.0 - 80.8 (12.2)"  "0.0 - 182.7 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-AL-7173                     TCGA-B1-5398 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 18(14Q32.2) MUTATED"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 18(14Q32.2) WILD-TYPE" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 18(14Q32.2) WILD-TYPE"   "DEL PEAK 18(14Q32.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 18(14Q32.2) MUTATED" "DEL PEAK 18(14Q32.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 18(14Q32.2) WILD-TYPE" 
[1] "hr=" "1.9"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(14Q32.2) MUTATED      8   15
  DEL PEAK 18(14Q32.2) WILD-TYPE   26   55
        clus
vv       DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE
  FEMALE                            8                             26
  MALE                             15                             55
D26V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 18(14Q32.2) MUTATED   10  3    10
  DEL PEAK 18(14Q32.2) WILD-TYPE 48 10    23
D26V5, multiclass
       clus
vv      DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE
  T1                              10                             48
  T2                               3                             10
  T3+T4                           10                             23
                                vv
clus                             N0 N1 N2
  DEL PEAK 18(14Q32.2) MUTATED    4  6  2
  DEL PEAK 18(14Q32.2) WILD-TYPE 16  6  2
D26V6, multiclass
    clus
vv   DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE
  N0                            4                             16
  N1                            6                              6
  N2                            2                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 18(14Q32.2) MUTATED    8  3 10
  DEL PEAK 18(14Q32.2) WILD-TYPE 46  2 26
D26V7, multiclass
    clus
vv   DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE
  M0                            8                             46
  M1                            3                              2
  MX                           10                             26
                                vv
clus                              I II III IV
  DEL PEAK 18(14Q32.2) MUTATED   10  2   4  5
  DEL PEAK 18(14Q32.2) WILD-TYPE 43  5  20  4
D26V8, multiclass
     clus
vv    DEL PEAK 18(14Q32.2) MUTATED DEL PEAK 18(14Q32.2) WILD-TYPE
  I                             10                             43
  II                             2                              5
  III                            4                             20
  IV                             5                              4

Clustering(27) Variable = Del Peak 19(15q14) mutation analysis
D27V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 19(15Q14) MUTATED    9  4
  DEL PEAK 19(15Q14) WILD-TYPE 74 10
  DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE 
                          13                           84 
  DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE 
                           4                           10 
$`DEL PEAK 19(15Q14) MUTATED`
TCGA-A4-7286 TCGA-A4-7583 TCGA-AL-3466 TCGA-B1-5398 TCGA-B3-3926 TCGA-BQ-5879 
        0.03         0.10         9.63        11.05         4.11        22.92 
TCGA-BQ-5882 TCGA-BQ-5889 TCGA-BQ-5894 TCGA-G7-6796 TCGA-G7-7502 TCGA-GL-6846 
       21.63        10.82         2.76        34.82        14.07       182.73 
TCGA-GL-7966 
        3.68 

$`DEL PEAK 19(15Q14) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
        0.69        15.95        35.18         0.03         0.89         0.23 
TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 
        1.61         4.60        58.45        53.79        13.55        30.31 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 
       25.08        44.61         7.33         3.58         5.88         4.44 
TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 
        4.83        50.50         0.69        10.82         3.02         0.46 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 
        1.08         0.62         6.44         1.18        86.73        19.23 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 
        8.84        63.72        43.17        47.80        40.83        26.04 
TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5890 TCGA-BQ-5891 
       30.28        26.04        25.35        13.25         7.63         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
       11.97         7.89       123.58        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.37        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.00         7.13         3.78        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
        3.75        14.63         3.02        79.82        80.84        51.16 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 
       61.02        54.87        15.48         5.85         5.26         6.84 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6797 TCGA-G7-7501 
       32.12        41.33        11.05        30.51        12.72        14.63 

  DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE 
                        0.03                         0.03 
  DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE 
                      182.73                       129.86 
  DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE 
                       10.82                        14.63 
[1] "0.0 - 182.7 (10.8)" "0.0 - 129.9 (14.6)"
                  TCGA-A4-7286                   TCGA-A4-7287 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "DEL PEAK 19(15Q14) MUTATED"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-GL-7966 
  "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "DEL PEAK 19(15Q14) MUTATED"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-GL-7966 
  "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-8098 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3466                   TCGA-AL-3467 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3468                   TCGA-AL-3471 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-3472                   TCGA-AL-3473 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-AL-7173                   TCGA-B1-5398 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-B1-7332                   TCGA-B3-3925 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B3-3926                   TCGA-B3-4103 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B3-4104                   TCGA-B3-8121 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-BQ-5875 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5876                   TCGA-BQ-5877 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5878                   TCGA-BQ-5879 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-BQ-5880                   TCGA-BQ-5881 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5882                   TCGA-BQ-5883 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5884                   TCGA-BQ-5885 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5886                   TCGA-BQ-5887 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5888                   TCGA-BQ-5889 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-BQ-5890                   TCGA-BQ-5891 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5892                   TCGA-BQ-5893 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-5894                   TCGA-BQ-7044 
  "DEL PEAK 19(15Q14) MUTATED" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7045                   TCGA-BQ-7046 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7048                   TCGA-BQ-7049 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7050                   TCGA-BQ-7051 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7053                   TCGA-BQ-7055 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7056                   TCGA-BQ-7058 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7059                   TCGA-BQ-7060 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-BQ-7061                   TCGA-BQ-7062 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-5560                   TCGA-DW-5561 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7834                   TCGA-DW-7836 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7837                   TCGA-DW-7838 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7839                   TCGA-DW-7840 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DW-7841                   TCGA-DW-7842 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"DEL PEAK 19(15Q14) WILD-TYPE"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"DEL PEAK 19(15Q14) WILD-TYPE" "DEL PEAK 19(15Q14) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-GL-6846 
  "DEL PEAK 19(15Q14) MUTATED"   "DEL PEAK 19(15Q14) MUTATED" 
                  TCGA-GL-7966 
  "DEL PEAK 19(15Q14) MUTATED" 
[1] "hr=" "4.5"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 19(15Q14) MUTATED      4   10
  DEL PEAK 19(15Q14) WILD-TYPE   30   60
        clus
vv       DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE
  FEMALE                          4                           30
  MALE                           10                           60
D27V4, continuous
                              vv
clus                           T1 T2 T3+T4
  DEL PEAK 19(15Q14) MUTATED    4  0    10
  DEL PEAK 19(15Q14) WILD-TYPE 54 13    23
D27V5, multiclass
       clus
vv      DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE
  T1                             4                           54
  T2                             0                           13
  T3+T4                         10                           23
                              vv
clus                           N0 N1 N2
  DEL PEAK 19(15Q14) MUTATED    3  6  0
  DEL PEAK 19(15Q14) WILD-TYPE 17  6  4
D27V6, multiclass
    clus
vv   DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE
  N0                          3                           17
  N1                          6                            6
  N2                          0                            4
                              vv
clus                           M0 M1 MX
  DEL PEAK 19(15Q14) MUTATED    6  3  4
  DEL PEAK 19(15Q14) WILD-TYPE 48  2 32
D27V7, multiclass
    clus
vv   DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE
  M0                          6                           48
  M1                          3                            2
  MX                          4                           32
                              vv
clus                            I II III IV
  DEL PEAK 19(15Q14) MUTATED    4  0   5  4
  DEL PEAK 19(15Q14) WILD-TYPE 49  7  19  5
D27V8, multiclass
     clus
vv    DEL PEAK 19(15Q14) MUTATED DEL PEAK 19(15Q14) WILD-TYPE
  I                            4                           49
  II                           0                            7
  III                          5                           19
  IV                           4                            5

Clustering(28) Variable = Del Peak 20(19p13.3) mutation analysis
D28V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(19P13.3) MUTATED    6  1
  DEL PEAK 20(19P13.3) WILD-TYPE 77 13
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                             7                             90 
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                             1                             13 
$`DEL PEAK 20(19P13.3) MUTATED`
TCGA-A4-7286 TCGA-AL-3466 TCGA-B1-7332 TCGA-BQ-5876 TCGA-BQ-5890 TCGA-BQ-5891 
        0.03         9.63         7.33        19.23         7.63         0.95 
TCGA-G7-7502 
       14.07 

$`DEL PEAK 20(19P13.3) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 
        0.23         1.61         4.60        58.45        53.79        13.55 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 
       30.31        25.08        44.61        11.05         3.58         4.11 
TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
        5.88         4.44         4.83        50.50         0.69        10.82 
TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
        3.02         0.46         1.08         0.62         6.44         1.18 
TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 
       86.73         8.84        63.72        22.92        43.17        47.80 
TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       21.63        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 
       13.25        10.82        11.97         7.89         2.76       123.58 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.37 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       49.84        26.27        20.12        11.28         7.63         7.00 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
        7.13         3.78        11.61        13.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.74         3.75        14.63         3.02 
TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       79.82        80.84        51.16        61.02        54.87        15.48 
TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 
        5.85         5.26         6.84        32.12        41.33        11.05 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-GL-6846 TCGA-GL-7966 
       30.51        34.82        12.72        14.63       182.73         3.68 

  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                         19.23                         182.73 
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                          7.63                          14.63 
[1] "0.0 - 19.2 (7.6)"   "0.0 - 182.7 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 20(19P13.3) MUTATED"   "DEL PEAK 20(19P13.3) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 20(19P13.3) MUTATED"   "DEL PEAK 20(19P13.3) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 20(19P13.3) MUTATED"   "DEL PEAK 20(19P13.3) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 20(19P13.3) WILD-TYPE" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 20(19P13.3) MUTATED" "DEL PEAK 20(19P13.3) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 20(19P13.3) WILD-TYPE" 
[1] "hr=" "4.6"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(19P13.3) MUTATED      3    5
  DEL PEAK 20(19P13.3) WILD-TYPE   31   65
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  FEMALE                            3                             31
  MALE                              5                             65
D28V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 20(19P13.3) MUTATED    2  1     5
  DEL PEAK 20(19P13.3) WILD-TYPE 56 12    28
D28V5, multiclass
       clus
vv      DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  T1                               2                             56
  T2                               1                             12
  T3+T4                            5                             28
                                vv
clus                             N0 N1 N2
  DEL PEAK 20(19P13.3) MUTATED    2  1  0
  DEL PEAK 20(19P13.3) WILD-TYPE 18 11  4
D28V6, multiclass
    clus
vv   DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  N0                            2                             18
  N1                            1                             11
  N2                            0                              4
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(19P13.3) MUTATED    4  1  2
  DEL PEAK 20(19P13.3) WILD-TYPE 50  4 34
D28V7, multiclass
    clus
vv   DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  M0                            4                             50
  M1                            1                              4
  MX                            2                             34
                                vv
clus                              I II III IV
  DEL PEAK 20(19P13.3) MUTATED    2  1   3  1
  DEL PEAK 20(19P13.3) WILD-TYPE 51  6  21  8
D28V8, multiclass
     clus
vv    DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  I                              2                             51
  II                             1                              6
  III                            3                             21
  IV                             1                              8

Clustering(29) Variable = Del Peak 21(19q13.2) mutation analysis
D29V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(19Q13.2) MUTATED    7  0
  DEL PEAK 21(19Q13.2) WILD-TYPE 76 14
  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                             7                             90 
  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                             0                             14 
$`DEL PEAK 21(19Q13.2) MUTATED`
TCGA-A4-7286 TCGA-B1-7332 TCGA-BQ-5885 TCGA-BQ-5891 TCGA-BQ-7044 TCGA-BQ-7048 
        0.03         7.33        30.28         0.95       123.58        93.34 
TCGA-G7-7502 
       14.07 

$`DEL PEAK 21(19Q13.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.23         1.61         4.60         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 
       13.55        30.31        25.08        44.61        11.05         3.58 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
        4.11         5.88         4.44         4.83        50.50         0.69 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       10.82         3.02         0.46         1.08         0.62         6.44 
TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 
        1.18        86.73        19.23         8.84        63.72        22.92 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 
       43.17        47.80        21.63        40.83        26.04        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5892 TCGA-BQ-5893 
       25.35        13.25        10.82         7.63        11.97         7.89 
TCGA-BQ-5894 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
        2.76        48.26        96.92        44.84        61.28        50.37 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       49.84        26.27        20.12        11.28         7.63         7.00 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
        7.13         3.78        11.61        13.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.74         3.75        14.63         3.02 
TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       79.82        80.84        51.16        61.02        54.87        15.48 
TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 
        5.85         5.26         6.84        32.12        41.33        11.05 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-GL-6846 TCGA-GL-7966 
       30.51        34.82        12.72        14.63       182.73         3.68 

  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                        123.58                         182.73 
  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                        14.070                         13.675 
[1] "0.0 - 123.6 (14.1)" "0.0 - 182.7 (13.7)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 21(19Q13.2) WILD-TYPE"   "DEL PEAK 21(19Q13.2) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 21(19Q13.2) MUTATED" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-GL-7966 
"DEL PEAK 21(19Q13.2) WILD-TYPE" 
[1] "hr="     "7.6e+07"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(19Q13.2) MUTATED      2    5
  DEL PEAK 21(19Q13.2) WILD-TYPE   32   65
        clus
vv       DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE
  FEMALE                            2                             32
  MALE                              5                             65
D29V4, continuous
[1] "Remove cluster labels:"       "DEL PEAK 21(19Q13.2) MUTATED"
clus
  DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE 
                             2                             20 
                    TCGA-A4-7828                     TCGA-AL-3466 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-EV-5901                     TCGA-EV-5902 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-EV-5903                     TCGA-G7-6790 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6793                     TCGA-G7-6796 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 21(19Q13.2) WILD-TYPE" "DEL PEAK 21(19Q13.2) WILD-TYPE" 
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 21(19Q13.2) MUTATED    1  1     5
  DEL PEAK 21(19Q13.2) WILD-TYPE 57 12    28
D29V5, multiclass
       clus
vv      DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE
  T1                               1                             57
  T2                               1                             12
  T3+T4                            5                             28
                                vv
clus                             N0 N1 N2
  DEL PEAK 21(19Q13.2) MUTATED    3  0  0
  DEL PEAK 21(19Q13.2) WILD-TYPE 17 12  4
D29V6, multiclass
    clus
vv   DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE
  N0                            3                             17
  N1                            0                             12
  N2                            0                              4
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(19Q13.2) MUTATED    4  0  2
  DEL PEAK 21(19Q13.2) WILD-TYPE 50  5 34
D29V7, multiclass
    clus
vv   DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE
  M0                            4                             50
  M1                            0                              5
  MX                            2                             34
                                vv
clus                              I II III IV
  DEL PEAK 21(19Q13.2) MUTATED    1  1   4  0
  DEL PEAK 21(19Q13.2) WILD-TYPE 52  6  20  9
D29V8, multiclass
     clus
vv    DEL PEAK 21(19Q13.2) MUTATED DEL PEAK 21(19Q13.2) WILD-TYPE
  I                              1                             52
  II                             1                              6
  III                            4                             20
  IV                             0                              9

Clustering(30) Variable = Del Peak 22(19q13.42) mutation analysis
D30V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 22(19Q13.42) MUTATED    8  0
  DEL PEAK 22(19Q13.42) WILD-TYPE 75 14
  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                              8                              89 
  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                              0                              14 
$`DEL PEAK 22(19Q13.42) MUTATED`
TCGA-A4-7286 TCGA-A4-8098 TCGA-B1-7332 TCGA-BQ-5885 TCGA-BQ-5891 TCGA-BQ-7048 
        0.03         4.60         7.33        30.28         0.95        93.34 
TCGA-BQ-7060 TCGA-G7-7502 
        7.00        14.07 

$`DEL PEAK 22(19Q13.42) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        15.95         0.10        35.18         0.03         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 
        0.23         1.61         9.63        58.45        53.79        13.55 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 
       30.31        25.08        44.61        11.05         3.58         4.11 
TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
        5.88         4.44         4.83        50.50         0.69        10.82 
TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
        3.02         0.46         1.08         0.62         6.44         1.18 
TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 
       86.73        19.23         8.84        63.72        22.92        43.17 
TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 
       47.80        21.63        40.83        26.04        26.04        25.35 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 
       13.25        10.82         7.63        11.97         7.89         2.76 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
      123.58        48.26        96.92        44.84        61.28        50.37 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7061 
       49.84        26.27        20.12        11.28         7.63         7.13 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        3.78        11.61        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 
       24.46        13.74         3.75        14.63         3.02        79.82 
TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 
       80.84        51.16        61.02        54.87        15.48         5.85 
TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 
        5.26         6.84        32.12        41.33        11.05        30.51 
TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-GL-6846 TCGA-GL-7966 
       34.82        12.72        14.63       182.73         3.68 

  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                           0.03                            0.03 
  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                          93.34                          182.73 
  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                          7.165                          14.630 
[1] "0.0 - 93.3 (7.2)"   "0.0 - 182.7 (14.6)"
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-8098 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-AL-3466                      TCGA-AL-3467 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3468                      TCGA-AL-3471 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3472                      TCGA-AL-3473 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-7173                      TCGA-B1-5398 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B1-7332                      TCGA-B3-3925 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B3-3926                      TCGA-B3-4103 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4104                      TCGA-B3-8121 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-BQ-5875 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5876                      TCGA-BQ-5877 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5878                      TCGA-BQ-5879 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5880                      TCGA-BQ-5881 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5882                      TCGA-BQ-5883 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5884                      TCGA-BQ-5885 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-5886                      TCGA-BQ-5887 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5888                      TCGA-BQ-5889 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5890                      TCGA-BQ-5891 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-5892                      TCGA-BQ-5893 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5894                      TCGA-BQ-7044 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7045                      TCGA-BQ-7046 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7048                      TCGA-BQ-7049 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7050                      TCGA-BQ-7051 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7053                      TCGA-BQ-7055 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7056                      TCGA-BQ-7058 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7059                      TCGA-BQ-7060 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-7061                      TCGA-BQ-7062 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-7502                      TCGA-GL-6846 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7966 
"DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-8098 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-AL-3466                      TCGA-AL-3467 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3468                      TCGA-AL-3471 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3472                      TCGA-AL-3473 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-7173                      TCGA-B1-5398 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B1-7332                      TCGA-B3-3925 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B3-3926                      TCGA-B3-4103 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4104                      TCGA-B3-8121 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-BQ-5875 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5876                      TCGA-BQ-5877 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5878                      TCGA-BQ-5879 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5880                      TCGA-BQ-5881 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5882                      TCGA-BQ-5883 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5884                      TCGA-BQ-5885 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-5886                      TCGA-BQ-5887 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5888                      TCGA-BQ-5889 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5890                      TCGA-BQ-5891 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-5892                      TCGA-BQ-5893 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5894                      TCGA-BQ-7044 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7045                      TCGA-BQ-7046 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7048                      TCGA-BQ-7049 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7050                      TCGA-BQ-7051 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7053                      TCGA-BQ-7055 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7056                      TCGA-BQ-7058 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7059                      TCGA-BQ-7060 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-7061                      TCGA-BQ-7062 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-7502                      TCGA-GL-6846 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7966 
"DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-8098 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-AL-3466                      TCGA-AL-3467 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3468                      TCGA-AL-3471 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3472                      TCGA-AL-3473 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-AL-7173                      TCGA-B1-5398 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B1-7332                      TCGA-B3-3925 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B3-3926                      TCGA-B3-4103 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4104                      TCGA-B3-8121 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-BQ-5875 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5876                      TCGA-BQ-5877 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5878                      TCGA-BQ-5879 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5880                      TCGA-BQ-5881 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5882                      TCGA-BQ-5883 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5884                      TCGA-BQ-5885 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-5886                      TCGA-BQ-5887 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5888                      TCGA-BQ-5889 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5890                      TCGA-BQ-5891 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-5892                      TCGA-BQ-5893 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5894                      TCGA-BQ-7044 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7045                      TCGA-BQ-7046 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7048                      TCGA-BQ-7049 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7050                      TCGA-BQ-7051 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7053                      TCGA-BQ-7055 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7056                      TCGA-BQ-7058 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7059                      TCGA-BQ-7060 
"DEL PEAK 22(19Q13.42) WILD-TYPE"   "DEL PEAK 22(19Q13.42) MUTATED" 
                     TCGA-BQ-7061                      TCGA-BQ-7062 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-7502                      TCGA-GL-6846 
  "DEL PEAK 22(19Q13.42) MUTATED" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7966 
"DEL PEAK 22(19Q13.42) WILD-TYPE" 
[1] "hr="     "2.6e+07"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(19Q13.42) MUTATED      2    6
  DEL PEAK 22(19Q13.42) WILD-TYPE   32   64
        clus
vv       DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE
  FEMALE                             2                              32
  MALE                               6                              64
D30V4, continuous
[1] "Remove cluster labels:"        "DEL PEAK 22(19Q13.42) MUTATED"
clus
  DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE 
                              2                              20 
                     TCGA-A4-7828                      TCGA-AL-3466 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5901                      TCGA-EV-5902 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5903                      TCGA-G7-6790 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6793                      TCGA-G7-6796 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 22(19Q13.42) WILD-TYPE" "DEL PEAK 22(19Q13.42) WILD-TYPE" 
                                 vv
clus                              T1 T2 T3+T4
  DEL PEAK 22(19Q13.42) MUTATED    3  1     4
  DEL PEAK 22(19Q13.42) WILD-TYPE 55 12    29
D30V5, multiclass
       clus
vv      DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE
  T1                                3                              55
  T2                                1                              12
  T3+T4                             4                              29
                                 vv
clus                              N0 N1 N2
  DEL PEAK 22(19Q13.42) MUTATED    3  0  0
  DEL PEAK 22(19Q13.42) WILD-TYPE 17 12  4
D30V6, multiclass
    clus
vv   DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE
  N0                             3                              17
  N1                             0                              12
  N2                             0                               4
                                 vv
clus                              M0 M1 MX
  DEL PEAK 22(19Q13.42) MUTATED    4  0  3
  DEL PEAK 22(19Q13.42) WILD-TYPE 50  5 33
D30V7, multiclass
    clus
vv   DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE
  M0                             4                              50
  M1                             0                               5
  MX                             3                              33
                                 vv
clus                               I II III IV
  DEL PEAK 22(19Q13.42) MUTATED    3  1   3  0
  DEL PEAK 22(19Q13.42) WILD-TYPE 50  6  21  9
D30V8, multiclass
     clus
vv    DEL PEAK 22(19Q13.42) MUTATED DEL PEAK 22(19Q13.42) WILD-TYPE
  I                               3                              50
  II                              1                               6
  III                             3                              21
  IV                              0                               9

Clustering(31) Variable = Del Peak 23(22q12.2) mutation analysis
D31V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(22Q12.2) MUTATED   24  4
  DEL PEAK 23(22Q12.2) WILD-TYPE 59 10
  DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE 
                            28                             69 
  DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE 
                             4                             10 
$`DEL PEAK 23(22Q12.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-8098 TCGA-AL-3466 TCGA-B1-7332 TCGA-B3-3925 
        0.03        15.95         4.60         9.63         7.33         3.58 
TCGA-B3-3926 TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5884 TCGA-BQ-5885 
        4.11        86.73         8.84        22.92        26.04        30.28 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7050 TCGA-BQ-7051 
        7.63         0.95         2.76       123.58        61.28        50.37 
TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7061 TCGA-DZ-6131 TCGA-EV-5902 TCGA-G7-6793 
       26.27        20.12         7.13        79.82         5.85        11.05 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-7966 
       12.72        14.63        14.07         3.68 

$`DEL PEAK 23(22Q12.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
        0.69         0.10        35.18         0.03         0.89         0.23 
TCGA-A4-7996 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
        1.61        58.45        53.79        13.55        30.31        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 
       44.61        11.05         5.88         4.44         4.83        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
        0.69        10.82         3.02         0.46         1.08         0.62 
TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5876 TCGA-BQ-5878 TCGA-BQ-5880 TCGA-BQ-5881 
        6.44         1.18        19.23        63.72        43.17        47.80 
TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       21.63        40.83        26.04        25.35        13.25        10.82 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
       11.97         7.89        48.26        96.92        93.34        44.84 
TCGA-BQ-7053 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7062 TCGA-DW-5560 
       49.84        11.28         7.63         7.00         3.78        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
        3.75        14.63         3.02        80.84        51.16        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 
       54.87        15.48         5.26         6.84        32.12        41.33 
TCGA-G7-6795 TCGA-G7-6796 TCGA-GL-6846 
       30.51        34.82       182.73 

  DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE 
                        123.58                         182.73 
  DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE 
                        11.885                         14.630 
[1] "0.0 - 123.6 (11.9)" "0.0 - 182.7 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 23(22Q12.2) WILD-TYPE"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 23(22Q12.2) WILD-TYPE" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK 23(22Q12.2) MUTATED"   "DEL PEAK 23(22Q12.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 23(22Q12.2) MUTATED" "DEL PEAK 23(22Q12.2) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 23(22Q12.2) MUTATED" 
[1] "hr=" "1.2"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(22Q12.2) MUTATED     13   16
  DEL PEAK 23(22Q12.2) WILD-TYPE   21   54
        clus
vv       DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE
  FEMALE                           13                             21
  MALE                             16                             54
D31V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 23(22Q12.2) MUTATED   10  3    16
  DEL PEAK 23(22Q12.2) WILD-TYPE 48 10    17
D31V5, multiclass
       clus
vv      DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE
  T1                              10                             48
  T2                               3                             10
  T3+T4                           16                             17
                                vv
clus                             N0 N1 N2
  DEL PEAK 23(22Q12.2) MUTATED    7  6  1
  DEL PEAK 23(22Q12.2) WILD-TYPE 13  6  3
D31V6, multiclass
    clus
vv   DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE
  N0                            7                             13
  N1                            6                              6
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(22Q12.2) MUTATED   16  3  9
  DEL PEAK 23(22Q12.2) WILD-TYPE 38  2 27
D31V7, multiclass
    clus
vv   DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE
  M0                           16                             38
  M1                            3                              2
  MX                            9                             27
                                vv
clus                              I II III IV
  DEL PEAK 23(22Q12.2) MUTATED    9  2  12  4
  DEL PEAK 23(22Q12.2) WILD-TYPE 44  5  12  5
D31V8, multiclass
     clus
vv    DEL PEAK 23(22Q12.2) MUTATED DEL PEAK 23(22Q12.2) WILD-TYPE
  I                              9                             44
  II                             2                              5
  III                           12                             12
  IV                             4                              5

Clustering(32) Variable = Del Peak 24(Xq21.31) mutation analysis
D32V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(XQ21.31) MUTATED   10  5
  DEL PEAK 24(XQ21.31) WILD-TYPE 73  9
  DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE 
                            15                             82 
  DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE 
                             5                              9 
$`DEL PEAK 24(XQ21.31) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-AL-3466 TCGA-B1-7332 TCGA-B3-3926 
        0.03         0.69         0.10         9.63         7.33         4.11 
TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-DZ-6131 TCGA-G7-6793 
       19.23         8.84        22.92        21.63        79.82        11.05 
TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-7966 
       14.63        14.07         3.68 

$`DEL PEAK 24(XQ21.31) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
       15.95        35.18         0.03         0.89         0.23         1.61 
TCGA-A4-8098 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
        4.60        58.45        53.79        13.55        30.31        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
       44.61        11.05         3.58         5.88         4.44         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50         0.69        10.82         3.02         0.46         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5878 TCGA-BQ-5880 
        0.62         6.44         1.18        86.73        63.72        43.17 
TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       47.80        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
       13.25        10.82         7.63         0.95        11.97         7.89 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        2.76       123.58        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.37        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.00         7.13         3.78        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.74         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
       14.63         3.02        80.84        51.16        61.02        54.87 
TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 
       15.48         5.85         5.26         6.84        32.12        41.33 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-GL-6846 
       30.51        34.82        12.72       182.73 

  DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE 
                         79.82                         182.73 
  DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE 
                         9.630                         15.055 
[1] "0.0 - 79.8 (9.6)"   "0.0 - 182.7 (15.1)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 24(XQ21.31) MUTATED"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 24(XQ21.31) MUTATED"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 24(XQ21.31) MUTATED"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 24(XQ21.31) MUTATED"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 24(XQ21.31) MUTATED"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-8098 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-AL-3467 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3468                     TCGA-AL-3471 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3472                     TCGA-AL-3473 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-AL-7173                     TCGA-B1-5398 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B1-7332                     TCGA-B3-3925 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B3-3926                     TCGA-B3-4103 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B3-4104                     TCGA-B3-8121 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 24(XQ21.31) MUTATED"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 24(XQ21.31) WILD-TYPE" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 24(XQ21.31) WILD-TYPE"   "DEL PEAK 24(XQ21.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-GL-6846 
  "DEL PEAK 24(XQ21.31) MUTATED" "DEL PEAK 24(XQ21.31) WILD-TYPE" 
                    TCGA-GL-7966 
  "DEL PEAK 24(XQ21.31) MUTATED" 
[1] "hr=" "6.4"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(XQ21.31) MUTATED      8    8
  DEL PEAK 24(XQ21.31) WILD-TYPE   26   62
        clus
vv       DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE
  FEMALE                            8                             26
  MALE                              8                             62
D32V4, continuous
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 24(XQ21.31) MUTATED    5  1    10
  DEL PEAK 24(XQ21.31) WILD-TYPE 53 12    23
D32V5, multiclass
       clus
vv      DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE
  T1                               5                             53
  T2                               1                             12
  T3+T4                           10                             23
                                vv
clus                             N0 N1 N2
  DEL PEAK 24(XQ21.31) MUTATED    3  5  1
  DEL PEAK 24(XQ21.31) WILD-TYPE 17  7  3
D32V6, multiclass
    clus
vv   DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE
  N0                            3                             17
  N1                            5                              7
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(XQ21.31) MUTATED    6  2  7
  DEL PEAK 24(XQ21.31) WILD-TYPE 48  3 29
D32V7, multiclass
    clus
vv   DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE
  M0                            6                             48
  M1                            2                              3
  MX                            7                             29
                                vv
clus                              I II III IV
  DEL PEAK 24(XQ21.31) MUTATED    5  1   6  3
  DEL PEAK 24(XQ21.31) WILD-TYPE 48  6  18  6
D32V8, multiclass
     clus
vv    DEL PEAK 24(XQ21.31) MUTATED DEL PEAK 24(XQ21.31) WILD-TYPE
  I                              5                             48
  II                             1                              6
  III                            6                             18
  IV                             3                              6

Clustering(33) Variable = Del Peak 25(Xq28) mutation analysis
D33V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 25(XQ28) MUTATED   10  4
  DEL PEAK 25(XQ28) WILD-TYPE 73 10
  DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE 
                         14                          83 
  DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE 
                          4                          10 
$`DEL PEAK 25(XQ28) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-AL-3466 TCGA-B1-7332 TCGA-B3-3926 
        0.03         0.69         0.10         9.63         7.33         4.11 
TCGA-BQ-5876 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-G7-6793 TCGA-G7-6797 TCGA-G7-7501 
       19.23        22.92        21.63        11.05        12.72        14.63 
TCGA-G7-7502 TCGA-GL-7966 
       14.07         3.68 

$`DEL PEAK 25(XQ28) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
       15.95        35.18         0.03         0.89         0.23         1.61 
TCGA-A4-8098 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
        4.60        58.45        53.79        13.55        30.31        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
       44.61        11.05         3.58         5.88         4.44         4.83 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50         0.69        10.82         3.02         0.46         1.08 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 
        0.62         6.44         1.18        86.73         8.84        63.72 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       43.17        47.80        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       25.35        13.25        10.82         7.63         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
        7.89         2.76       123.58        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.37        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.00         7.13         3.78        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.74 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
        3.75        14.63         3.02        79.82        80.84        51.16 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 
       61.02        54.87        15.48         5.85         5.26         6.84 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-GL-6846 
       32.12        41.33        30.51        34.82       182.73 

  DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE 
                       0.03                        0.03 
  DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE 
                      22.92                      182.73 
  DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE 
                      10.34                       15.48 
[1] "0.0 - 22.9 (10.3)"  "0.0 - 182.7 (15.5)"
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 25(XQ28) MUTATED"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
  "DEL PEAK 25(XQ28) MUTATED"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-G7-7502                  TCGA-GL-6846 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 25(XQ28) MUTATED"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
  "DEL PEAK 25(XQ28) MUTATED"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-G7-7502                  TCGA-GL-6846 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 25(XQ28) MUTATED"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-8098 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3466                  TCGA-AL-3467 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3468                  TCGA-AL-3471 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-3472                  TCGA-AL-3473 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-AL-7173                  TCGA-B1-5398 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B1-7332                  TCGA-B3-3925 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B3-3926                  TCGA-B3-4103 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B3-4104                  TCGA-B3-8121 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 25(XQ28) WILD-TYPE"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 25(XQ28) WILD-TYPE" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
  "DEL PEAK 25(XQ28) MUTATED"   "DEL PEAK 25(XQ28) MUTATED" 
                 TCGA-G7-7502                  TCGA-GL-6846 
  "DEL PEAK 25(XQ28) MUTATED" "DEL PEAK 25(XQ28) WILD-TYPE" 
                 TCGA-GL-7966 
  "DEL PEAK 25(XQ28) MUTATED" 
[1] "hr=" "9.9"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 25(XQ28) MUTATED      8    7
  DEL PEAK 25(XQ28) WILD-TYPE   26   63
        clus
vv       DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE
  FEMALE                         8                          26
  MALE                           7                          63
D33V4, continuous
                             vv
clus                          T1 T2 T3+T4
  DEL PEAK 25(XQ28) MUTATED    6  1     8
  DEL PEAK 25(XQ28) WILD-TYPE 52 12    25
D33V5, multiclass
       clus
vv      DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE
  T1                            6                          52
  T2                            1                          12
  T3+T4                         8                          25
                             vv
clus                          N0 N1 N2
  DEL PEAK 25(XQ28) MUTATED    2  4  1
  DEL PEAK 25(XQ28) WILD-TYPE 18  8  3
D33V6, multiclass
    clus
vv   DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE
  N0                         2                          18
  N1                         4                           8
  N2                         1                           3
                             vv
clus                          M0 M1 MX
  DEL PEAK 25(XQ28) MUTATED    6  1  7
  DEL PEAK 25(XQ28) WILD-TYPE 48  4 29
D33V7, multiclass
    clus
vv   DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE
  M0                         6                          48
  M1                         1                           4
  MX                         7                          29
                             vv
clus                           I II III IV
  DEL PEAK 25(XQ28) MUTATED    5  1   6  2
  DEL PEAK 25(XQ28) WILD-TYPE 48  6  18  7
D33V8, multiclass
     clus
vv    DEL PEAK 25(XQ28) MUTATED DEL PEAK 25(XQ28) WILD-TYPE
  I                           5                          48
  II                          1                           6
  III                         6                          18
  IV                          2                           7
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
                           V5                            V6 
                "PATHOLOGY.T"                 "PATHOLOGY.N" 
                           V7                            V8 
        "PATHOLOGICSPREAD(M)"                 "TUMOR.STAGE" 
> q(save="no")
