ClinicalAnalysisAllGenes_new1 data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/KIRP-TP/2900732/0.GDAC_mRNA_Preprocess_Median.Finished/KIRP-TP.medianexp.txt |
ClinicalAnalysisAllGenes_new1 clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/KIRP-TP/2843150/1.GDAC_clinicalDataPicker.Finished/KIRP-TP.clin.merged.picked.txt |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff p | 1 |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff fdr | 0.05 |
ClinicalAnalysisAllGenesReport_nozzle2 max table rows | 10 |
ClinicalAnalysisAllGenesReport_nozzle2 nozzle ver | Nozzle.R1 |
ClinicalAnalysisAllGenesReport_nozzle2 options | MRNA_EXPR |
Execution Times: | |
Submitted: | 22:14:21 08-04-13 |
Completed: | |
Elapsed: | 02 hrs 19 mins 40 secs |
step 1. ClinicalAnalysisAllGenes_new [id: 373503] Associate individual gene expression profiles to clinical parameters by survival test, t-test, correlation test, or ANOVA test
urn:lsid:broadinstitute.org:cancer.genome.analysis:00333:13
data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/KIRP-TP/2900732/0.GDAC_mRNA_Preprocess_Median.Finished/KIRP-TP.medianexp.txt |
clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/KIRP-TP/2843150/1.GDAC_clinicalDataPicker.Finished/KIRP-TP.clin.merged.picked.txt |
genes filtered by list | |
genes filtered by variance | ALL |
samples filtered by list | |
features used | ALL |
output name | |
job description |
Output Files: | |
KIRP-TP.clin.merged.picked.clindata.txt | |
KIRP-TP.medianexp.exprdata.gct | |
KIRP-TP.medianexp.analysis.results.RData | |
KIRP-TP.medianexp.clinical.results.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 22:14:21 08-04-13 |
Completed: | 00:23:20 09-04-13 |
Elapsed: | 02 hrs 08 mins 59 secs |
step 2. ClinicalAnalysisAllGenesReport_nozzle [id: 373504] Generate a report to summarize the results from ClinicalAnalysisAllGenes module
urn:lsid:broadinstitute.org:cancer.genome.analysis:00334:29
all result file | KIRP-TP.medianexp.clinical.results.txt |
RData file | KIRP-TP.medianexp.analysis.results.RData |
expression file | KIRP-TP.medianexp.exprdata.gct |
clinical file | KIRP-TP.clin.merged.picked.clindata.txt |
cutoff p | 1 |
cutoff fdr | 0.05 |
max table rows | 10 |
nozzle ver | Nozzle.R1 |
options | MRNA_EXPR |
report title | |
job description |
Output Files: | |
table1.txt | |
supp.table1.txt | |
V2ex.pdf | |
table4.txt | |
V2ex.png | |
nozzle.html | |
V3ex.png | |
table6.txt | |
.lsf.out | |
nozzle.RData | |
V3ex.pdf | |
stdout.txt |
Execution Times: | |
Submitted: | 22:14:21 08-04-13 |
Completed: | 00:34:00 09-04-13 |
Elapsed: | 02 hrs 19 mins 38 secs |