GDAC_MergedClusteringPipeline Execution Log 2:54 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2861029/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2902651/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 mergedfile LAML-TB
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2900759/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/2859856/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2860168/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/2860169/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
Execution Times:
Submitted: 02:54:45 09-04-13
Completed:
Elapsed: 06 hrs 53 mins 38 secs

step 1. GDAC_mergedClustering [id: 374823] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2861029/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2902651/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
mergedfile LAML-TB
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2900759/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/2859856/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/2860168/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/2860169/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
Output Files:
 LAML-TB.transferedmergedcluster.txt
 .lsf.out
 LAML-TB.mergedcluster.txt
 stdout.txt
Execution Times:
Submitted: 02:54:46 09-04-13
Completed: 02:55:06 09-04-13
Elapsed: 00 hrs 00 mins 20 secs

step 2. GDAC_mergedReport [id: 374824]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster LAML-TB.transferedmergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:54:46 09-04-13
Completed: 09:48:21 09-04-13
Elapsed: 06 hrs 53 mins 35 secs