mutsig2cluster_new1 sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/LAML-TB/2910342/LAML-TB.sample_sig_gene_table.txt |
Correlate_Clinical_Clusters_onlysig2 clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LAML-TB/2843136/1.GDAC_clinicalDataPicker.Finished/LAML-TB.clin.merged.picked.txt |
Correlate_Clinical_Clusters_onlysig2 filter cluster smaller than | 3 |
Correlate_Clinical_Clusters_onlysig2 figure height | 5 |
Correlate_Clinical_Clusters_onlysig2 figure width | 9 |
Correlate_Clinical_Clusters_onlysig2 survival legend position | OUT |
Correlate_Clinical_Clusters_onlysig2 pvalue cutoff | 1 |
Correlate_Clinical_Clusters_onlysig2 qvalue cutoff | 0.25 |
Correlate_Clinical_Clusters_onlysig2 make figure | ONLYSIG |
Correlate_Clinical_Clusters_onlysig2 nozzle ver | Nozzle.R1 |
Execution Times: | |
Submitted: | 06:57:46 10-04-13 |
Completed: | |
Elapsed: | 07 hrs 13 mins 12 secs |
step 1. mutsig2cluster_new [id: 377382] Convert mutsig results to cluster files
urn:lsid:broadinstitute.org:cancer.genome.analysis:00336:4
sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/LAML-TB/2910342/LAML-TB.sample_sig_gene_table.txt |
maf file | |
sig gene file | |
sig gene q cutoff | 0.01 |
output name |
Output Files: | |
LAML-TB.mutsig.cluster.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 06:57:47 10-04-13 |
Completed: | 14:09:35 10-04-13 |
Elapsed: | 07 hrs 11 mins 47 secs |
step 2. Correlate_Clinical_Clusters_onlysig [id: 377383]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00335:81
cluster label file | LAML-TB.mutsig.cluster.txt |
clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LAML-TB/2843136/1.GDAC_clinicalDataPicker.Finished/LAML-TB.clin.merged.picked.txt |
features used | ALL |
filter cluster smaller than | 3 |
output name | |
figure height | 5 |
figure width | 9 |
survival legend position | OUT |
pvalue cutoff | 1 |
qvalue cutoff | 0.25 |
make figure | ONLYSIG |
nozzle ver | Nozzle.R1 |
options | MUTSIG |
report title | |
job description |
Output Files: | |
D4V1.pdf | |
D7V2.pdf | |
D4V1.png | |
D7V2.png | |
D10V1.pdf | |
D10V2.png | |
D9V2.pdf | |
D10V1.png | |
D9V2.png | |
D10V2.pdf | |
table.1.txt | |
nozzle.RData | |
nozzle.html | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 06:57:47 10-04-13 |
Completed: | 14:10:57 10-04-13 |
Elapsed: | 07 hrs 13 mins 09 secs |