Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D40V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D13V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D1V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D13V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D11V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D28V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D28V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D28V7.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D29V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D4V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D17V7.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D17V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D16V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D3V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LGG-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D40V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D13V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D1V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D13V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D11V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D28V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D28V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D28V7.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D29V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D4V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D17V7.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D17V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D16V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	D3V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:17	Correlate_Clinical_vs_CopyNumber_Focal_2013032600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2013032600.0.0	yes
