
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/LUSC-TP/2861396/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2843850/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=327, in cluster file=397, common to both=325
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 325
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               23               302 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               23               302 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               69               256 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               69               256 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               76               249 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               76               249 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               36               289 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               36               289 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               34               291 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               34               291 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              147               178 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              147               178 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               14               311 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               14               311 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                6               319 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                6               319 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              152               173 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              152               173 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               34               291 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               34               291 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               31               294 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               31               294 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               18               307 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               18               307 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               90               235 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               90               235 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               85               240 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               85               240 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               45               280 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               45               280 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               95               230 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               95               230 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               19               306 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               19               306 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               297 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               297 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                17                308 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                17                308 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 7                318 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 7                318 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                20                305 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                20                305 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                22                303 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                22                303 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                90                235 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                90                235 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                41                284 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                41                284 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 8                317 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 8                317 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                31                294 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                31                294 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                30                295 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                30                295 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                15                310 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                15                310 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                19                306 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                19                306 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                316 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                316 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                35                290 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                35                290 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                54                271 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                54                271 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                39                286 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                39                286 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                33                292 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                33                292 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                46                279 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                46                279 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                91                234 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                91                234 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                80                245 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                80                245 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                307 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                307 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                77                248 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                77                248 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9               316 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9               316 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               48               277 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               48               277 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               318 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               318 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               317 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               317 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              141               184 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              141               184 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               24               301 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               24               301 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              138               187 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              138               187 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              119               206 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              119               206 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               22               303 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               22               303 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              117               208 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              117               208 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               33               292 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               33               292 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               34               291 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               34               291 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               20               305 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               20               305 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               10               315 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               10               315 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               95               230 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               95               230 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9               316 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9               316 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              134               191 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              134               191 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               84               241 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               84               241 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                71                254 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                71                254 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                70                255 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                70                255 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                278 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                278 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                28                297 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                28                297 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 4                321 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 4                321 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                321 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                321 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               122                203 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               122                203 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                60                265 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                60                265 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                38                287 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                38                287 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                48                277 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                48                277 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                60                265 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                60                265 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               115                210 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               115                210 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                306 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                306 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                33                292 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                33                292 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                63                262 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                63                262 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                53                272 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                53                272 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                36                289 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                36                289 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                16                309 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                16                309 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                17                308 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                17                308 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                99                226 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                99                226 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                33                292 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                33                292 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               13               312 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               13               312 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 325 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3516         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
         962           NA          908          656          329          608 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
         223          454          131         1953           53          429 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
         822         1485          622         1067         1470          734 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
          17         1161         1057          399           NA          587 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
          NA          358          964         1974         1932          444 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
        1345           24         1651         2170           NA          357 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         573          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
         428           NA          334           NA          821           80 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        1874          958          881          999          950         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
         698          168           NA           NA          120           13 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
          12          199          246          227          238          207 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
          12          103         1454         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
         832         1107          474         1084           24          544 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
         556          550          399          352          573          258 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
         549          213          183           85           NA           NA 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3765 
         212           48         2023          202          193           NA 
TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 TCGA-46-6025 TCGA-46-6026 
          NA           NA           NA           NA           29           18 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
          12           12           63          541          178          922 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
          NA           NA          880            3           NA           62 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
          31           30           13           30           44           40 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
          26            6            1          473          109           NA 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
         311           NA           NA         2500          660         2082 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
        1505         1685          888          274         1456          512 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        1075         1181          931           96          793          733 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 
         693           37          719          358           NA           NA 
TCGA-63-6202 TCGA-63-7020 TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 TCGA-66-2727 
          NA           NA           NA           NA           NA          516 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
        1311           61          641           30           31           61 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
          28           30           30          638          761           30 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
          61           31           61           61          215          700 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
         578           92           61          578          366          121 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
         365          759           59          790         1217          699 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
         123          699          153          913          306         1645 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
         122         1492           83          202          211          244 
TCGA-68-8251 TCGA-70-6722 TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
          95           NA           NA           NA           NA           NA 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
          NA           NA         2736           NA           15         1285 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
          NA           NA           NA           NA          479           NA 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
          NA         1641           NA         2522           NA           NA 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
          NA           NA         3166           NA           NA          833 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-79-5596 
          NA          293           NA         1092           10           NA 
TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
          NA           11           24           34           18           10 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7710 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
          49            1           NA           35           38           60 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
          26           60           16           43           14           36 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
          13           11           44           54           41           47 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
          89           18          100           82          106          122 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
         160           69           87           NA          143         1213 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        1777          188          210          115          413          223 
TCGA-98-8023 
         308 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=118,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=225,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=155,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=88,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=49,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "TOBACCOSMOKINGHISTORYINDICATOR"        
[12] "YEAROFTOBACCOSMOKINGONSET"             
[13] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
165  90  62   4 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 325 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 78 196  33  18 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 78 196  33  18 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 78 196  33  18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 78 196  33  18 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
201  91  26   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
201  91  26   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
201  91  26   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
201  91  26   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
165  90  62   4 
[1] "table(vv)"
vv
  I  II III  IV 
165  90  62   4 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
165  90  62   4 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
165  90  62   4 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=88, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=49, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    15   8
  1P GAIN WILD-TYPE 173 112
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               23               285 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                8               112 
$`1P GAIN MUTATED`
TCGA-18-3414 TCGA-18-3417 TCGA-21-1081 TCGA-22-1012 TCGA-22-1016 TCGA-22-5481 
       13.02        24.92         9.30        14.10        27.02        79.20 
TCGA-33-4533 TCGA-33-4587 TCGA-34-5240 TCGA-37-3783 TCGA-43-2576 TCGA-43-3920 
      114.05        54.44         7.73         3.95        18.28        18.84 
TCGA-43-6143 TCGA-52-7809 TCGA-60-2695 TCGA-60-2723 TCGA-66-2763 TCGA-77-7140 
        7.00         5.85        15.55        22.78         0.99        20.78 
TCGA-77-7141 TCGA-77-7338 TCGA-85-8049 TCGA-85-8072 TCGA-90-7964 
        0.49         0.16         1.97         1.18         3.29 

$`1P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       11.34        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 
       14.60        44.22         0.79        54.28        71.34        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.08         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
        0.79        17.88        18.08        13.12        11.57         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 
        0.59         0.39         0.39         2.07        17.79        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.20         0.03         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 
       11.18        89.95        42.25        70.09       106.95        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        0.53         1.41         0.46         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.78         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.16              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           114.05            173.79 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            13.02             13.12 
[1] "0.2 - 114.0 (13.0)" "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     10   13
  1P GAIN WILD-TYPE   73  229
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              10                73
  MALE                13               229
D1V4, continuous
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                52 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5787        TCGA-22-1017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-52-7810        TCGA-56-7222        TCGA-56-7822        TCGA-60-2696 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723        TCGA-85-7843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-92-7340        TCGA-92-7341        TCGA-98-7454 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                       4
  1P GAIN WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                        0
  1P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P GAIN MUTATED                                        0
  1P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                         1
  1P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P GAIN MUTATED                                                            18
  1P GAIN WILD-TYPE                                                         297
D1V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED     1  20   1   1
  1P GAIN WILD-TYPE  77 176  32  17
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1               1                77
  T2              20               176
  T3               1                32
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  1P GAIN MUTATED    15   6   2   0
  1P GAIN WILD-TYPE 186  85  24   5
D1V7, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              15               186
  N1               6                85
  N2               2                24
  N3               0                 5
                   vv
clus                 M0  M1  MX
  1P GAIN MUTATED    19   2   2
  1P GAIN WILD-TYPE 266   2  28
D1V8, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              19               266
  M1               2                 2
  MX               2                28
                   vv
clus                  I  II III  IV
  1P GAIN MUTATED    15   4   2   2
  1P GAIN WILD-TYPE 150  86  60   2
D1V9, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                15               150
  II                4                86
  III               2                60
  IV                2                 2
D1V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1   22
  1P GAIN WILD-TYPE   10  292
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                1                10
  YES              22               292
D1V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P GAIN MUTATED                                            13
  1P GAIN WILD-TYPE                                         145
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P GAIN MUTATED                                        3              4
  1P GAIN WILD-TYPE                                     71             68
                   vv
clus                LIFELONG NON-SMOKER
  1P GAIN MUTATED                     2
  1P GAIN WILD-TYPE                  12
D1V12, multiclass
                                             clus
vv                                            1P GAIN MUTATED 1P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              13               145
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                71
  CURRENT SMOKER                                            4                68
  LIFELONG NON-SMOKER                                       2                12
D1V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1P GAIN MUTATED    19   1   0   1
  1P GAIN WILD-TYPE 234   5   4  15
D1V14, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  R0              19               234
  R1               1                 5
  R2               0                 4
  RX               1                15

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    42  26
  1Q GAIN WILD-TYPE 146  94
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               68               240 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               26                94 
$`1Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3414 TCGA-18-3417 TCGA-18-5592 TCGA-21-1072 
       81.07        46.52        13.02        24.92         3.02        99.16 
TCGA-21-1077 TCGA-21-1081 TCGA-21-5784 TCGA-22-1012 TCGA-22-1016 TCGA-22-4599 
       34.78         9.30        29.85        14.10        27.02        38.17 
TCGA-22-4607 TCGA-22-5474 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 
       19.30        14.60        71.34        79.20        30.08        62.86 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
      114.05        97.94       173.79       141.34        14.07        54.44 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 
        2.63        61.61        50.24        10.82         7.73         5.52 
TCGA-37-3783 TCGA-37-4133 TCGA-39-5037 TCGA-43-2576 TCGA-43-3920 TCGA-43-6143 
        3.95         7.82         0.79        18.28        18.84         7.00 
TCGA-51-4080 TCGA-52-7809 TCGA-56-7223 TCGA-56-7582 TCGA-60-2695 TCGA-60-2722 
        0.39         5.85         0.99         0.85        15.55        24.10 
TCGA-60-2723 TCGA-66-2737 TCGA-66-2755 TCGA-66-2756 TCGA-66-2763 TCGA-66-2770 
       22.78         2.01         0.92         0.99         0.99        23.01 
TCGA-66-2777 TCGA-66-2785 TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 
        2.01         1.94        73.08        23.28        89.95        20.78 
TCGA-77-7141 TCGA-77-7338 TCGA-77-7463 TCGA-77-8009 TCGA-77-8145 TCGA-77-8148 
        0.49         0.16        46.78        53.95         6.97         9.63 
TCGA-85-7696 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-90-7767 TCGA-90-7964 
        0.59         1.97         0.53         1.18         2.93         3.29 
TCGA-94-7557 TCGA-94-7943 
        0.16         4.70 

$`1Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        79.46         4.80        11.34        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 
       27.16       115.59        46.88        70.13        60.89        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
       24.13         0.56        34.75        13.12        32.02         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        64.90        63.52        44.22         0.79 
TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       54.28        11.74        18.84        56.32        16.60        82.98 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 
       43.10       103.53        10.98        19.76        26.99        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       28.96        32.84        31.23        51.78        32.68         9.04 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 
       14.07        22.95         4.96         1.08         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         8.09         7.46         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       15.58        35.64        17.88        18.08        13.12        11.57 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 
        0.95         0.59         0.39         2.07        17.79        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 
        0.99         0.43         1.45         1.32         0.20         0.03 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       26.07         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         1.02         2.01         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7465 
       75.09        11.18        42.25        70.09       106.95        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
        6.51        86.76        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        0.85         1.41         0.46         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 
        1.78         1.35         1.55         0.59         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 
        4.01         5.26         2.27         2.86        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.16              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           173.79            122.43 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           14.085            12.855 
[1] "0.2 - 173.8 (14.1)" "0.0 - 122.4 (12.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     18   51
  1Q GAIN WILD-TYPE   65  191
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              18                65
  MALE                51               191
D2V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                       5
  1Q GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                        0
  1Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q GAIN MUTATED                                        0
  1Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                         1
  1Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q GAIN MUTATED                                                            63
  1Q GAIN WILD-TYPE                                                         252
D2V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q GAIN MUTATED    11  46   6   6
  1Q GAIN WILD-TYPE  67 150  27  12
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              11                67
  T2              46               150
  T3               6                27
  T4               6                12
                   vv
clus                 N0  N1  N2  N3
  1Q GAIN MUTATED    42  21   5   0
  1Q GAIN WILD-TYPE 159  70  21   5
D2V7, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0              42               159
  N1              21                70
  N2               5                21
  N3               0                 5
                   vv
clus                 M0  M1  MX
  1Q GAIN MUTATED    61   2   5
  1Q GAIN WILD-TYPE 224   2  25
D2V8, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              61               224
  M1               2                 2
  MX               5                25
                   vv
clus                  I  II III  IV
  1Q GAIN MUTATED    37  17  13   2
  1Q GAIN WILD-TYPE 128  73  49   2
D2V9, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                37               128
  II               17                73
  III              13                49
  IV                2                 2
D2V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      2   67
  1Q GAIN WILD-TYPE    9  247
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                2                 9
  YES              67               247
D2V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1Q GAIN MUTATED                                            33
  1Q GAIN WILD-TYPE                                         125
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1Q GAIN MUTATED                                       16             15
  1Q GAIN WILD-TYPE                                     58             57
                   vv
clus                LIFELONG NON-SMOKER
  1Q GAIN MUTATED                     3
  1Q GAIN WILD-TYPE                  11
D2V12, multiclass
                                             clus
vv                                            1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              33               125
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   16                58
  CURRENT SMOKER                                           15                57
  LIFELONG NON-SMOKER                                       3                11
D2V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q GAIN MUTATED    57   2   0   2
  1Q GAIN WILD-TYPE 196   4   4  14
D2V14, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  R0              57               196
  R1               2                 4
  R2               0                 4
  RX               2                14

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    46  26
  2P GAIN WILD-TYPE 142  94
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               72               236 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               26                94 
$`2P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-21-1072 
       11.34        13.02        59.51        24.92         1.61        99.16 
TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 
       31.69         9.30        88.08        20.45        24.13        38.17 
TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 TCGA-22-5478 TCGA-22-5480 TCGA-22-5483 
       13.12        31.69        63.52         0.79        71.34        18.84 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4566 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       62.86        82.98       173.79        26.99         2.63        31.50 
TCGA-34-5231 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-4130 TCGA-37-4133 
       50.24         7.73         5.52         1.08         8.09         7.82 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-3394 
       74.07        44.71        35.64         0.79        18.28        11.57 
TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 
       18.05         7.00        66.51         6.64         9.96         0.95 
TCGA-51-4080 TCGA-52-7809 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-60-2711 
        0.39         5.85         1.45         0.85         0.20        29.19 
TCGA-60-2723 TCGA-66-2771 TCGA-66-2777 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
       22.78        19.00         2.01         4.04        30.02        10.06 
TCGA-66-2795 TCGA-68-7755 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        4.01         2.73        29.56        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-8009 TCGA-77-8148 TCGA-85-6560 
        0.49        42.25        70.09        53.95         9.63         0.36 
TCGA-85-6798 TCGA-85-7696 TCGA-85-8052 TCGA-85-8072 TCGA-90-7769 TCGA-94-7943 
        1.12         0.59         0.53         1.18         0.59         4.70 

$`2P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3416 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       27.16       115.59        46.88        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
       15.55       122.43       119.80         8.78        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       48.33         0.56        34.75        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5481 
       11.77        64.90        14.60        44.22        54.28        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 
       11.74        30.08        56.32        16.60       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       19.76        61.61        28.96        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       32.68         9.04        10.82        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 
        3.95         0.43         0.39         6.54         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        47.80        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       15.58        17.88        18.08        13.12        18.84         8.48 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-8116 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 
        6.35         0.59         0.39         2.07        17.79        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7822 TCGA-60-2695 
        0.99         0.43         0.99         1.32         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        49.48        55.40         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        1.02         2.01         2.01         7.07        23.01         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
       25.97        40.01        22.98        22.98         5.03        54.08 
TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 
       49.05         6.64         6.94         8.02         3.12        73.08 
TCGA-77-6844 TCGA-77-7140 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       75.09        20.78       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
        6.51        86.76        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-7697 
        6.97        54.41        35.90         0.33         0.79         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.97         1.41         0.46         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 
        1.78         1.35         1.55         2.93         3.29         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 
       39.88        58.42         6.18         6.90         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.20              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           173.79            141.34 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           12.295            13.825 
[1] "0.2 - 173.8 (12.3)" "0.0 - 141.3 (13.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     13   63
  2P GAIN WILD-TYPE   70  179
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              13                70
  MALE                63               179
D3V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                       5
  2P GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                        1
  2P GAIN WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2P GAIN MUTATED                                        0
  2P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                         0
  2P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P GAIN MUTATED                                                            70
  2P GAIN WILD-TYPE                                                         245
D3V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN MUTATED    14  44  11   7
  2P GAIN WILD-TYPE  64 152  22  11
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1              14                64
  T2              44               152
  T3              11                22
  T4               7                11
                   vv
clus                 N0  N1  N2  N3
  2P GAIN MUTATED    40  29   5   1
  2P GAIN WILD-TYPE 161  62  21   4
D3V7, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              40               161
  N1              29                62
  N2               5                21
  N3               1                 4
                   vv
clus                 M0  M1  MX
  2P GAIN MUTATED    68   2   4
  2P GAIN WILD-TYPE 217   2  26
D3V8, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              68               217
  M1               2                 2
  MX               4                26
                   vv
clus                  I  II III  IV
  2P GAIN MUTATED    31  26  17   2
  2P GAIN WILD-TYPE 134  64  45   2
D3V9, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                31               134
  II               26                64
  III              17                45
  IV                2                 2
D3V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      5   71
  2P GAIN WILD-TYPE    6  243
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                5                 6
  YES              71               243
D3V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2P GAIN MUTATED                                            39
  2P GAIN WILD-TYPE                                         119
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2P GAIN MUTATED                                       20             15
  2P GAIN WILD-TYPE                                     54             57
                   vv
clus                LIFELONG NON-SMOKER
  2P GAIN MUTATED                     2
  2P GAIN WILD-TYPE                  12
D3V12, multiclass
                                             clus
vv                                            2P GAIN MUTATED 2P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              39               119
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   20                54
  CURRENT SMOKER                                           15                57
  LIFELONG NON-SMOKER                                       2                12
D3V13, continuous
                   vv
clus                 R0  R1  R2  RX
  2P GAIN MUTATED    62   1   1   2
  2P GAIN WILD-TYPE 191   5   3  14
D3V14, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  R0              62               191
  R1               1                 5
  R2               1                 3
  RX               2                14

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    22  12
  2Q GAIN WILD-TYPE 166 108
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               34               274 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               12               108 
$`2Q GAIN MUTATED`
TCGA-18-3414 TCGA-21-1072 TCGA-21-1081 TCGA-22-4595 TCGA-22-4604 TCGA-22-5480 
       13.02        99.16         9.30        24.13        13.12        71.34 
TCGA-22-5483 TCGA-33-4566 TCGA-34-2596 TCGA-34-2604 TCGA-34-5240 TCGA-34-7107 
       18.84       173.79         2.63        31.50         7.73         1.08 
TCGA-37-4130 TCGA-37-4133 TCGA-39-5016 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 
        8.09         7.82        74.07        35.64         0.79        18.28 
TCGA-43-3394 TCGA-43-5670 TCGA-43-6143 TCGA-52-7809 TCGA-56-7582 TCGA-56-7730 
       11.57        18.05         7.00         5.85         0.85         0.20 
TCGA-60-2711 TCGA-60-2723 TCGA-66-2792 TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 
       29.19        22.78        30.02        29.56        23.28        89.95 
TCGA-77-7142 TCGA-77-8009 TCGA-77-8130 TCGA-90-7769 
       42.25        53.95        82.92         0.59 

$`2Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 
       35.08        48.33         0.56        38.17        34.75        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22         0.79        54.28        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       97.94        43.10       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       10.98        19.76        26.99        61.61        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        0.39         6.54         7.46         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        13.12        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       68.45        49.48        55.40         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 
        6.64         6.94         8.02         3.12        73.08        75.09 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       11.18        20.78         0.49        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8131 
       46.78        15.75         6.51        86.76        37.81        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.03         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        1.45         1.78         1.35         1.55         2.93         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.20              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           173.79            141.34 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           18.560            12.195 
[1] "0.2 - 173.8 (18.6)" "0.0 - 141.3 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      7   29
  2Q GAIN WILD-TYPE   76  213
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               7                76
  MALE                29               213
D4V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                       4
  2Q GAIN WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                        1
  2Q GAIN WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q GAIN MUTATED                                        0
  2Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                         0
  2Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q GAIN MUTATED                                                            31
  2Q GAIN WILD-TYPE                                                         284
D4V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN MUTATED     4  27   3   2
  2Q GAIN WILD-TYPE  74 169  30  16
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               4                74
  T2              27               169
  T3               3                30
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  2Q GAIN MUTATED    20  14   2   0
  2Q GAIN WILD-TYPE 181  77  24   5
D4V7, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              20               181
  N1              14                77
  N2               2                24
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2Q GAIN MUTATED    33   1   1
  2Q GAIN WILD-TYPE 252   3  29
D4V8, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              33               252
  M1               1                 3
  MX               1                29
                   vv
clus                  I  II III  IV
  2Q GAIN MUTATED    13  19   3   1
  2Q GAIN WILD-TYPE 152  71  59   3
D4V9, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                13               152
  II               19                71
  III               3                59
  IV                1                 3
D4V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      3   33
  2Q GAIN WILD-TYPE    8  281
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                3                 8
  YES              33               281
D4V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q GAIN MUTATED                                            19
  2Q GAIN WILD-TYPE                                         139
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q GAIN MUTATED                                        7              9
  2Q GAIN WILD-TYPE                                     67             63
                   vv
clus                LIFELONG NON-SMOKER
  2Q GAIN MUTATED                     1
  2Q GAIN WILD-TYPE                  13
D4V12, multiclass
                                             clus
vv                                            2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              19               139
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    7                67
  CURRENT SMOKER                                            9                63
  LIFELONG NON-SMOKER                                       1                13
D4V13, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q GAIN MUTATED    29   0   0   2
  2Q GAIN WILD-TYPE 224   6   4  14
D4V14, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  R0              29               224
  R1               0                 6
  R2               0                 4
  RX               2                14

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    17  16
  3P GAIN WILD-TYPE 171 104
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               33               275 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               16               104 
$`3P GAIN MUTATED`
TCGA-18-3414 TCGA-21-1081 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-5477 
       13.02         9.30        35.08        24.13        34.75        44.22 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4582 TCGA-33-4586 TCGA-34-5240 
       30.08        62.86        56.32       103.53        14.07         7.73 
TCGA-37-4133 TCGA-39-5019 TCGA-39-5021 TCGA-39-5029 TCGA-39-5037 TCGA-43-3394 
        7.82        44.71        68.58        24.33         0.79        11.57 
TCGA-43-5670 TCGA-46-6025 TCGA-56-7223 TCGA-56-7730 TCGA-60-2706 TCGA-60-2713 
       18.05         0.95         0.99         0.20        82.19        47.87 
TCGA-60-2715 TCGA-66-2727 TCGA-66-2756 TCGA-66-2773 TCGA-66-2777 TCGA-85-6561 
       35.34        16.96         0.99         3.02         2.01         0.79 
TCGA-85-6798 TCGA-94-7943 TCGA-96-7545 
        1.12         4.70        58.42 

$`3P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 
       20.45        48.33         0.56        38.17        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       18.84        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      173.79       141.34        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       50.24        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         8.09         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        3.39        47.80        74.07        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        18.28        18.08        13.12        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 
        1.58        66.51         6.64         6.35         9.96         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        0.99         0.43         1.45         1.32         0.85         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       16.83        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       22.78         1.22        23.64        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 
        2.01         7.07        23.01        19.00        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-7696 
        9.63        54.41        35.90         0.33         0.36         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        2.93         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 
        5.26         2.27         2.86         0.16        39.88         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78        13.58         7.33        10.13 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.20              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           103.53            173.79 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            16.96             12.59 
[1] "0.2 - 103.5 (17.0)" "0.0 - 173.8 (12.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      4   30
  3P GAIN WILD-TYPE   79  212
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               4                79
  MALE                30               212
D5V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                       1
  3P GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                        0
  3P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P GAIN MUTATED                                        0
  3P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                         0
  3P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P GAIN MUTATED                                                            33
  3P GAIN WILD-TYPE                                                         282
D5V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN MUTATED    11  15   3   5
  3P GAIN WILD-TYPE  67 181  30  13
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1              11                67
  T2              15               181
  T3               3                30
  T4               5                13
                   vv
clus                 N0  N1  N2  N3
  3P GAIN MUTATED    23   7   3   0
  3P GAIN WILD-TYPE 178  84  23   5
D5V7, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              23               178
  N1               7                84
  N2               3                23
  N3               0                 5
                   vv
clus                 M0  M1  MX
  3P GAIN MUTATED    29   1   3
  3P GAIN WILD-TYPE 256   3  27
D5V8, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              29               256
  M1               1                 3
  MX               3                27
                   vv
clus                  I  II III  IV
  3P GAIN MUTATED    16   9   8   1
  3P GAIN WILD-TYPE 149  81  54   3
D5V9, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                16               149
  II                9                81
  III               8                54
  IV                1                 3
D5V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      1   33
  3P GAIN WILD-TYPE   10  281
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                1                10
  YES              33               281
D5V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P GAIN MUTATED                                            12
  3P GAIN WILD-TYPE                                         146
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P GAIN MUTATED                                        9             13
  3P GAIN WILD-TYPE                                     65             59
                   vv
clus                LIFELONG NON-SMOKER
  3P GAIN MUTATED                     0
  3P GAIN WILD-TYPE                  14
D5V12, multiclass
                                             clus
vv                                            3P GAIN MUTATED 3P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              12               146
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                65
  CURRENT SMOKER                                           13                59
  LIFELONG NON-SMOKER                                       0                14
D5V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3P GAIN MUTATED    26   1   0   1
  3P GAIN WILD-TYPE 227   5   4  15
D5V14, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  R0              26               227
  R1               1                 5
  R2               0                 4
  RX               1                15

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    87  53
  3Q GAIN WILD-TYPE 101  67
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              140               168 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               53                67 
$`3Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
        4.80        13.02        24.92         1.61        43.76         2.79 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       46.88        60.89       122.43         9.30         8.78        31.63 
TCGA-21-5783 TCGA-22-0940 TCGA-22-1002 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
       88.08        19.99         4.31        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        32.02         9.53        11.77        64.90 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       44.22        54.28        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 
       82.98        43.10       173.79       103.53        14.07        10.98 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
        2.63        61.61        51.78         9.04         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4132 TCGA-37-4133 
       22.95         5.52         1.08         3.95         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39         3.39        44.71        68.58        55.17 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2578 TCGA-43-3394 
       24.33        27.35        15.58         0.79        18.08        11.57 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 
       18.84        18.05         7.00        66.51         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-56-5897 TCGA-56-7223 
        0.59         0.39         2.07         5.85         0.10         0.99 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2706 TCGA-60-2708 TCGA-60-2710 
        0.20         0.03        15.55        82.19        68.45        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2721 TCGA-60-2723 TCGA-60-2726 
        9.01        47.87        35.34        26.07        22.78        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2756 TCGA-66-2759 TCGA-66-2765 
       16.96        43.10         0.99         0.99        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2787 TCGA-66-2789 TCGA-68-8250 
       12.03         3.98        24.95        40.01         4.04         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 
        3.12        29.56        23.28        11.18        89.95         0.49 
TCGA-77-7335 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8133 TCGA-77-8140 
       70.09        15.75        86.76        53.95        53.92        11.54 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        6.97         9.63        54.41         0.36         0.79         1.12 
TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8072 
        0.33         1.15         1.25         1.97         0.53         1.18 
TCGA-85-8276 TCGA-85-8288 TCGA-90-7766 TCGA-90-7767 TCGA-92-8063 TCGA-92-8064 
        0.43         1.78         1.55         2.93         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 
        2.27         2.86         4.70        39.88        58.42         6.90 
TCGA-98-8021 TCGA-98-8022 
       13.58         7.33 

$`3Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         6.15        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
      115.59        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1082 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 
      119.80        29.85        21.57        10.82         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
       64.21         1.74        14.10        27.02        48.82        48.33 
TCGA-22-4596 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
        0.56        13.12        19.30        31.69        63.52        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-33-4533 
        0.79        71.34        79.20        11.74        18.84       114.05 
TCGA-33-4538 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 
       97.94       141.34        54.44        19.76        26.99        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 
       28.96        32.84        31.23        50.24        32.68        10.82 
TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-39-5011 
        4.96         0.43         0.39         6.54         8.09        47.80 
TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 
       74.07        70.03        60.76         1.71         1.94        36.39 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-5668 TCGA-43-6647 
       35.64        17.88        18.28        13.12         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 
        2.79         5.42         3.78         6.97         1.58         6.64 
TCGA-43-8116 TCGA-51-4079 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        6.35         0.39        17.79        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
       28.93         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        1.32         0.85         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2711 TCGA-60-2714 TCGA-60-2716 
       37.94        21.70        49.48        29.19        16.83        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-66-2737 
       30.61         3.16        24.10         1.22        23.64         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         1.02         2.01         0.92         0.99        20.98 
TCGA-66-2763 TCGA-66-2768 TCGA-66-2769 TCGA-66-2778 TCGA-66-2782 TCGA-66-2785 
        0.99         2.01         7.07        19.00        12.00         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 
       73.08        75.09        20.78        42.25       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 
       46.78         6.51        37.81        82.92        12.59        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8154 TCGA-77-8156 
       17.69       104.09        26.40        27.39        35.90         0.33 
TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-8048 TCGA-85-8049 TCGA-85-8070 
        0.59         1.61         0.03         0.85         1.97         1.41 
TCGA-85-8071 TCGA-85-8277 TCGA-85-8287 TCGA-90-6837 TCGA-90-7769 TCGA-90-7964 
        0.46         0.36         1.45         1.35         0.59         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-94-7557 TCGA-96-8169 TCGA-98-7454 TCGA-98-8023 
        2.70         3.48         0.16         6.18         3.78        10.13 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.03              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           173.79            141.34 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           11.770            14.765 
[1] "0.0 - 173.8 (11.8)" "0.0 - 141.3 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     37  110
  3Q GAIN WILD-TYPE   46  132
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              37                46
  MALE               110               132
D6V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                       5
  3Q GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                        0
  3Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q GAIN MUTATED                                        0
  3Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                         0
  3Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q GAIN MUTATED                                                           142
  3Q GAIN WILD-TYPE                                                         173
D6V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q GAIN MUTATED    42  83  14   8
  3Q GAIN WILD-TYPE  36 113  19  10
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              42                36
  T2              83               113
  T3              14                19
  T4               8                10
                   vv
clus                 N0  N1  N2  N3
  3Q GAIN MUTATED    89  43  11   3
  3Q GAIN WILD-TYPE 112  48  15   2
D6V7, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              89               112
  N1              43                48
  N2              11                15
  N3               3                 2
                   vv
clus                 M0  M1  MX
  3Q GAIN MUTATED   130   3  12
  3Q GAIN WILD-TYPE 155   1  18
D6V8, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0             130               155
  M1               3                 1
  MX              12                18
                   vv
clus                 I II III IV
  3Q GAIN MUTATED   73 43  28  3
  3Q GAIN WILD-TYPE 92 47  34  1
D6V9, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                73                92
  II               43                47
  III              28                34
  IV                3                 1
D6V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      6  141
  3Q GAIN WILD-TYPE    5  173
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                6                 5
  YES             141               173
D6V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q GAIN MUTATED                                            68
  3Q GAIN WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q GAIN MUTATED                                       34             39
  3Q GAIN WILD-TYPE                                     40             33
                   vv
clus                LIFELONG NON-SMOKER
  3Q GAIN MUTATED                     2
  3Q GAIN WILD-TYPE                  12
D6V12, multiclass
                                             clus
vv                                            3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              68                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   34                40
  CURRENT SMOKER                                           39                33
  LIFELONG NON-SMOKER                                       2                12
D6V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q GAIN MUTATED   113   2   2   6
  3Q GAIN WILD-TYPE 140   4   2  10
D6V14, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  R0             113               140
  R1               2                 4
  R2               2                 2
  RX               6                10

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     6   5
  4P GAIN WILD-TYPE 182 115
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               11               297 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                5               115 
$`4P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-1017 TCGA-22-4591 TCGA-34-2596 TCGA-37-4130 
       79.46         4.80        48.82        20.45         2.63         8.09 
TCGA-43-3920 TCGA-43-8116 TCGA-68-8250 TCGA-77-8007 TCGA-90-7767 
       18.84         6.35         8.02         6.51         2.93 

$`4P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
        4.31        64.21         1.74        14.10        27.02        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         0.39         6.54         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 
       18.28        18.08        13.12        11.57         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        1.58        66.51         6.64         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.20         0.03        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.78         1.35         1.55         0.59         3.29         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             2.63              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            79.46            173.79 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             8.02             13.58 
[1] "2.6 - 79.5 (8.0)"   "0.0 - 173.8 (13.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0   14
  4P GAIN WILD-TYPE   83  228
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               0                83
  MALE                14               228
D7V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                       1
  4P GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                        0
  4P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P GAIN MUTATED                                        0
  4P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                         0
  4P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P GAIN MUTATED                                                            13
  4P GAIN WILD-TYPE                                                         302
D7V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     5   5   3   1
  4P GAIN WILD-TYPE  73 191  30  17
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               5                73
  T2               5               191
  T3               3                30
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED     9   4   1   0
  4P GAIN WILD-TYPE 192  87  25   5
D7V7, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0               9               192
  N1               4                87
  N2               1                25
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4P GAIN MUTATED    12   0   2
  4P GAIN WILD-TYPE 273   4  28
D7V8, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              12               273
  M1               0                 4
  MX               2                28
                   vv
clus                  I  II III  IV
  4P GAIN MUTATED     5   5   3   0
  4P GAIN WILD-TYPE 160  85  59   4
D7V9, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                 5               160
  II                5                85
  III               3                59
  IV                0                 4
D7V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0   14
  4P GAIN WILD-TYPE   11  300
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                0                11
  YES              14               300
D7V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P GAIN MUTATED                                             6
  4P GAIN WILD-TYPE                                         152
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P GAIN MUTATED                                        4              3
  4P GAIN WILD-TYPE                                     70             69
                   vv
clus                LIFELONG NON-SMOKER
  4P GAIN MUTATED                     1
  4P GAIN WILD-TYPE                  13
D7V12, multiclass
                                             clus
vv                                            4P GAIN MUTATED 4P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6               152
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                70
  CURRENT SMOKER                                            3                69
  LIFELONG NON-SMOKER                                       1                13
D7V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4P GAIN MUTATED     9   1   0   1
  4P GAIN WILD-TYPE 244   5   4  15
D7V14, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  R0               9               244
  R1               1                 5
  R2               0                 4
  RX               1                15

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     4   2
  4Q GAIN WILD-TYPE 184 118
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                6               302 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2               118 
$`4Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 TCGA-34-2596 TCGA-43-3920 TCGA-56-7579 
       79.46         4.80        28.34         2.63        18.84         1.45 

$`4Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       19.76        26.99        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.85        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        1.32         0.85         0.20         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        1.55         2.93         0.59         3.29         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16         4.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 
       39.88        58.42         6.18         6.90         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             1.45              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            79.46            173.79 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            11.82             13.12 
[1] "1.4 - 79.5 (11.8)"  "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    6
  4Q GAIN WILD-TYPE   83  236
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               0                83
  MALE                 6               236
D8V4, continuous
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                1                53 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3414        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5787        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-52-7810        TCGA-56-7222        TCGA-56-7822 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2698        TCGA-60-2712        TCGA-60-2715 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-92-7340        TCGA-92-7341 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454 
"4Q GAIN WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                       1
  4Q GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                        0
  4Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q GAIN MUTATED                                        0
  4Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                         0
  4Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q GAIN MUTATED                                                             5
  4Q GAIN WILD-TYPE                                                         310
D8V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     1   3   2   0
  4Q GAIN WILD-TYPE  77 193  31  18
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               1                77
  T2               3               193
  T3               2                31
  T4               0                18
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED     3   3   0   0
  4Q GAIN WILD-TYPE 198  88  26   5
D8V7, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               3               198
  N1               3                88
  N2               0                26
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4Q GAIN MUTATED     6   0   0
  4Q GAIN WILD-TYPE 279   4  30
D8V8, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               6               279
  M1               0                 4
  MX               0                30
                   vv
clus                  I  II III  IV
  4Q GAIN MUTATED     1   2   2   0
  4Q GAIN WILD-TYPE 164  88  60   4
D8V9, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 1               164
  II                2                88
  III               2                60
  IV                0                 4
D8V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    6
  4Q GAIN WILD-TYPE   11  308
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                11
  YES               6               308
D8V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q GAIN MUTATED                                             2
  4Q GAIN WILD-TYPE                                         156
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q GAIN MUTATED                                        4              0
  4Q GAIN WILD-TYPE                                     70             72
                   vv
clus                LIFELONG NON-SMOKER
  4Q GAIN MUTATED                     0
  4Q GAIN WILD-TYPE                  14
D8V12, multiclass
                                             clus
vv                                            4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2               156
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                70
  CURRENT SMOKER                                            0                72
  LIFELONG NON-SMOKER                                       0                14
D8V13, continuous
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2               215 
       TCGA-18-3406        TCGA-18-3417        TCGA-21-1078        TCGA-21-5782 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0940        TCGA-22-0944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1000        TCGA-22-1002        TCGA-22-1005        TCGA-22-1011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1012        TCGA-22-1016        TCGA-22-1017        TCGA-22-4591 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4596        TCGA-22-4605        TCGA-22-4607 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5479        TCGA-22-5480        TCGA-22-5481        TCGA-22-5482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4533        TCGA-33-4547        TCGA-33-4582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4583        TCGA-33-4586        TCGA-33-4587        TCGA-33-4589 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2604        TCGA-34-2605        TCGA-34-2609        TCGA-34-5240 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-37-4129        TCGA-37-4130        TCGA-37-4133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-5819        TCGA-39-5021        TCGA-39-5022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2576 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2578        TCGA-43-2581        TCGA-43-3394        TCGA-43-5670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5898 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7222        TCGA-56-7580 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-66-2727        TCGA-66-2734 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2769        TCGA-66-2770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8144        TCGA-77-8145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7710        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-92-7340        TCGA-92-7341 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-8169        TCGA-96-8170        TCGA-98-7454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  4Q GAIN MUTATED     6   0   0   0
  4Q GAIN WILD-TYPE 247   6   4  16
D8V14, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  R0               6               247
  R1               0                 6
  R2               0                 4
  RX               0                16

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED   96 50
  5P GAIN WILD-TYPE 92 70
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              146               162 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               50                70 
$`5P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3421 TCGA-18-5592 
       11.34        13.02        59.51        24.92        43.76         3.02 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 
       99.16        70.13        34.78       122.43         9.30        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-1011 
       88.08        29.85        21.57        10.82        19.99         1.74 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4609 TCGA-22-4613 
       14.10        35.08        48.33        24.13         9.53        11.77 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 
       63.52        44.22         0.79        11.74        18.84        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 
      114.05        43.10       173.79        54.44        26.99         2.63 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       32.84        31.23         9.04        10.82         7.73        14.07 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4133 
        5.52         4.96         1.08         3.95         0.39         7.82 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        74.07        68.58        55.17        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-7656 
       11.57        18.84        18.05         7.00         6.02         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-52-7809 
        1.58        66.51         6.35         0.95         0.59         5.85 
TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 
        8.75        28.93         2.04         1.02         0.43         1.32 
TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 TCGA-60-2703 TCGA-60-2711 TCGA-60-2713 
        0.85         0.03        15.55        96.82        29.19        47.87 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       16.83        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.64        11.77        16.96        21.07         0.99         1.02 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2769 
        0.99         0.99        20.98        25.02         1.02         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 TCGA-66-2785 TCGA-66-2786 TCGA-66-2792 
       23.01        19.00        19.00         1.94        25.97        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7756 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 
       54.08         4.01         6.64        29.56        75.09        23.28 
TCGA-77-7138 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 
       11.18       106.95        46.78        15.75         6.51        53.95 
TCGA-77-8130 TCGA-77-8143 TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       82.92        26.40         6.97        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.36         1.12         0.59         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8071 TCGA-85-8287 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.85         0.46         1.45         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-7341 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.70         3.48        39.88        58.42         6.18         6.90 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

$`5P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       28.34         1.61         6.15         2.79        90.51        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1082 
      115.59        46.88        60.89        15.55        31.69       119.80 
TCGA-21-1083 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 
        8.78         7.33        14.93         4.31        64.21        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.82        20.45         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 
       32.02        19.30        31.69        64.90        14.60        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       71.34        79.20        30.08        62.86        56.32        82.98 
TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 
       97.94       103.53       141.34        14.07        10.98        19.76 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       61.61        31.50        28.96        50.24        51.78        32.68 
TCGA-34-5927 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 
       22.95         0.43         6.54         8.09         7.46         6.81 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 TCGA-39-5034 TCGA-39-5037 
       47.80        44.71        60.76         1.71        36.39         0.79 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6770 TCGA-43-6771 
       18.28        18.08        13.12         8.48         2.79         5.42 
TCGA-43-6773 TCGA-43-8115 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        3.78         6.64         9.96         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 TCGA-56-7223 
       17.79        30.31        27.45         0.10         0.99         0.99 
TCGA-56-7579 TCGA-56-7730 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
        1.45         0.20         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       82.19        21.70        68.45        49.48        55.40         9.01 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 TCGA-66-2734 TCGA-66-2737 TCGA-66-2754 
       35.34        38.83        24.10        43.10         2.01         2.01 
TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2773 
        0.92         0.99         2.01         2.01         2.01         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 
        2.01        12.03         3.98        12.00        24.95        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2800 
       22.98         4.04        22.98         5.03        10.06        49.05 
TCGA-68-7755 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-7139 
        2.73         6.94         8.02         3.12        73.08        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-8008 
       20.78         0.49        42.25        70.09         0.16        86.76 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       37.81        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8148 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 
       11.54        27.39         9.63         0.79         0.33         1.61 
TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        1.97         1.97         0.53         1.41         1.18         0.43 
TCGA-85-8277 TCGA-85-8288 TCGA-90-6837 TCGA-90-7964 TCGA-92-8063 TCGA-92-8064 
        0.36         1.78         1.35         3.29         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-98-7454 TCGA-98-8021 
        2.27         2.86         0.16         4.70         3.78        13.58 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.03              0.10 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           173.79            141.34 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           13.545            13.120 
[1] "0.0 - 173.8 (13.5)" "0.1 - 141.3 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
[1] "hr=" "1.2"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     36  116
  5P GAIN WILD-TYPE   47  126
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              36                47
  MALE               116               126
D9V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                       5
  5P GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                        0
  5P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P GAIN MUTATED                                        0
  5P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                         1
  5P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P GAIN MUTATED                                                           146
  5P GAIN WILD-TYPE                                                         169
D9V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P GAIN MUTATED    28 101  12  11
  5P GAIN WILD-TYPE  50  95  21   7
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              28                50
  T2             101                95
  T3              12                21
  T4              11                 7
                   vv
clus                 N0  N1  N2  N3
  5P GAIN MUTATED    90  47  14   1
  5P GAIN WILD-TYPE 111  44  12   4
D9V7, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              90               111
  N1              47                44
  N2              14                12
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5P GAIN MUTATED   133   3  14
  5P GAIN WILD-TYPE 152   1  16
D9V8, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0             133               152
  M1               3                 1
  MX              14                16
                   vv
clus                 I II III IV
  5P GAIN MUTATED   74 43  30  3
  5P GAIN WILD-TYPE 91 47  32  1
D9V9, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                74                91
  II               43                47
  III              30                32
  IV                3                 1
D9V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      5  147
  5P GAIN WILD-TYPE    6  167
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                5                 6
  YES             147               167
D9V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P GAIN MUTATED                                            76
  5P GAIN WILD-TYPE                                          82
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P GAIN MUTATED                                       40             31
  5P GAIN WILD-TYPE                                     34             41
                   vv
clus                LIFELONG NON-SMOKER
  5P GAIN MUTATED                     2
  5P GAIN WILD-TYPE                  12
D9V12, multiclass
                                             clus
vv                                            5P GAIN MUTATED 5P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              76                82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   40                34
  CURRENT SMOKER                                           31                41
  LIFELONG NON-SMOKER                                       2                12
D9V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5P GAIN MUTATED   120   4   2   2
  5P GAIN WILD-TYPE 133   2   2  14
D9V14, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  R0             120               133
  R1               4                 2
  R2               2                 2
  RX               2                14

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    20  12
  5Q GAIN WILD-TYPE 168 108
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               32               276 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               12               108 
$`5Q GAIN MUTATED`
TCGA-18-5592 TCGA-21-1075 TCGA-21-5782 TCGA-22-1011 TCGA-22-1012 TCGA-22-4595 
        3.02        70.13        31.63         1.74        14.10        24.13 
TCGA-22-5478 TCGA-22-5482 TCGA-34-2596 TCGA-34-5241 TCGA-34-5928 TCGA-37-3792 
        0.79        11.74         2.63        14.07         5.52         0.39 
TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-60-2719 TCGA-60-2724 
       18.84         7.00         1.58        66.51        30.61         1.22 
TCGA-66-2744 TCGA-66-2786 TCGA-66-2792 TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 
        0.99        25.97        30.02        29.56        75.09        11.18 
TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-85-7699 TCGA-85-8048 TCGA-92-7340 
      106.95        46.78        15.75         0.03         0.85         2.70 
TCGA-96-7545 TCGA-96-8170 
       58.42         6.90 

$`5Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80         8.78        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       64.21        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 
       44.22        54.28        71.34        79.20        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76        26.99        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       10.82         7.73        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 
       18.28        18.08        13.12        11.57         8.48        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 
        6.02         2.79         5.42         3.78         6.97         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
        9.01        47.87        16.83        35.34        38.83         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10        22.78        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10         2.01        21.07         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6845 
        6.64         6.94         8.02         3.12        73.08        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 
       89.95        20.78         0.49        42.25        70.09         0.16 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         1.97         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        0.46         1.18         0.43         0.36         1.45         1.78 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7341 
        1.35         1.55         2.93         0.59         3.29         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16         4.70 
TCGA-96-7544 TCGA-96-8169 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88         6.18         3.78        13.58         7.33        10.13 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.03              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           106.95            173.79 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           12.905            13.120 
[1] "0.0 - 107.0 (12.9)" "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      9   25
  5Q GAIN WILD-TYPE   74  217
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               9                74
  MALE                25               217
D10V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                       1
  5Q GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                        0
  5Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q GAIN MUTATED                                        0
  5Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                         0
  5Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q GAIN MUTATED                                                            33
  5Q GAIN WILD-TYPE                                                         282
D10V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED     8  21   4   1
  5Q GAIN WILD-TYPE  70 175  29  17
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               8                70
  T2              21               175
  T3               4                29
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED    20  13   1   0
  5Q GAIN WILD-TYPE 181  78  25   5
D10V7, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              20               181
  N1              13                78
  N2               1                25
  N3               0                 5
                   vv
clus                 M0  M1  MX
  5Q GAIN MUTATED    30   0   3
  5Q GAIN WILD-TYPE 255   4  27
D10V8, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              30               255
  M1               0                 4
  MX               3                27
                   vv
clus                  I  II III  IV
  5Q GAIN MUTATED    18  12   4   0
  5Q GAIN WILD-TYPE 147  78  58   4
D10V9, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                18               147
  II               12                78
  III               4                58
  IV                0                 4
D10V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      2   32
  5Q GAIN WILD-TYPE    9  282
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                2                 9
  YES              32               282
D10V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q GAIN MUTATED                                            18
  5Q GAIN WILD-TYPE                                         140
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q GAIN MUTATED                                       10              5
  5Q GAIN WILD-TYPE                                     64             67
                   vv
clus                LIFELONG NON-SMOKER
  5Q GAIN MUTATED                     1
  5Q GAIN WILD-TYPE                  13
D10V12, multiclass
                                             clus
vv                                            5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              18               140
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   10                64
  CURRENT SMOKER                                            5                67
  LIFELONG NON-SMOKER                                       1                13
D10V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q GAIN MUTATED    26   1   0   1
  5Q GAIN WILD-TYPE 227   5   4  15
D10V14, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  R0              26               227
  R1               1                 5
  R2               0                 4
  RX               1                15

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    22   7
  6P GAIN WILD-TYPE 166 113
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               29               279 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                7               113 
$`6P GAIN MUTATED`
TCGA-21-1072 TCGA-21-1077 TCGA-21-5787 TCGA-22-4601 TCGA-22-4607 TCGA-22-5482 
       99.16        34.78        10.82        34.75        19.30        11.74 
TCGA-33-4587 TCGA-34-5928 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
       54.44         5.52         8.09         7.46         7.82         6.81 
TCGA-43-2578 TCGA-43-5670 TCGA-46-6026 TCGA-56-6545 TCGA-66-2754 TCGA-66-2757 
       18.08        18.05         0.59         2.04         2.01         0.99 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2793 TCGA-77-7465 TCGA-77-8156 
       25.02         2.01         1.02        10.06        15.75         0.33 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7843 TCGA-94-7943 TCGA-98-8022 
        0.36         1.12         1.15         4.70         7.33 

$`6P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
      115.59        46.88        70.13        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        21.57        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       35.08        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       18.28        13.12        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
       66.51         6.64         6.35         9.96         0.95         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39         2.07        17.79         5.85        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       27.45        28.93         0.10         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 
        1.02         0.92         0.99        20.98         0.99         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 
       70.09       106.95         0.16        46.78         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
        9.63        54.41        35.90         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
        3.78        13.58        10.13 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.33              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            99.16            173.79 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             7.46             14.60 
[1] "0.3 - 99.2 (7.5)"   "0.0 - 173.8 (14.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      8   23
  6P GAIN WILD-TYPE   75  219
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               8                75
  MALE                23               219
D11V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                       0
  6P GAIN WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                        0
  6P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P GAIN MUTATED                                        0
  6P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                         1
  6P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P GAIN MUTATED                                                            30
  6P GAIN WILD-TYPE                                                         285
D11V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED     5  21   1   4
  6P GAIN WILD-TYPE  73 175  32  14
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1               5                73
  T2              21               175
  T3               1                32
  T4               4                14
                   vv
clus                 N0  N1  N2  N3
  6P GAIN MUTATED    18   8   4   0
  6P GAIN WILD-TYPE 183  83  22   5
D11V7, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              18               183
  N1               8                83
  N2               4                22
  N3               0                 5
                   vv
clus                 M0  M1  MX
  6P GAIN MUTATED    28   1   2
  6P GAIN WILD-TYPE 257   3  28
D11V8, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              28               257
  M1               1                 3
  MX               2                28
                   vv
clus                  I  II III  IV
  6P GAIN MUTATED    12   8  10   1
  6P GAIN WILD-TYPE 153  82  52   3
D11V9, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                12               153
  II                8                82
  III              10                52
  IV                1                 3
D11V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   29
  6P GAIN WILD-TYPE    9  285
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                 9
  YES              29               285
D11V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P GAIN MUTATED                                            15
  6P GAIN WILD-TYPE                                         143
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P GAIN MUTATED                                       10              5
  6P GAIN WILD-TYPE                                     64             67
                   vv
clus                LIFELONG NON-SMOKER
  6P GAIN MUTATED                     1
  6P GAIN WILD-TYPE                  13
D11V12, multiclass
                                             clus
vv                                            6P GAIN MUTATED 6P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15               143
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   10                64
  CURRENT SMOKER                                            5                67
  LIFELONG NON-SMOKER                                       1                13
D11V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6P GAIN MUTATED    27   1   1   0
  6P GAIN WILD-TYPE 226   5   3  16
D11V14, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  R0              27               226
  R1               1                 5
  R2               1                 3
  RX               0                16

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    14   3
  6Q GAIN WILD-TYPE 174 117
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               17               291 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3               117 
$`6Q GAIN MUTATED`
TCGA-22-5482 TCGA-33-4547 TCGA-33-4587 TCGA-37-4135 TCGA-43-2578 TCGA-43-3920 
       11.74        43.10        54.44         6.81        18.08        18.84 
TCGA-43-5670 TCGA-46-6026 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2793 
       18.05         0.59         0.99        25.02         2.01        10.06 
TCGA-77-7465 TCGA-85-6798 TCGA-85-7843 TCGA-94-7943 TCGA-98-8022 
       15.75         1.12         1.15         4.70         7.33 

$`6Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       44.22         0.79        54.28        71.34        79.20        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       97.94       173.79       103.53       141.34        14.07        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
        0.79        17.88        18.28        13.12        11.57         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.20         0.03        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       20.98         0.99         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       22.98         4.04        22.98         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
        0.16        46.78         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       35.90         0.33         0.36         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
        3.78        13.58        10.13 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.59              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            54.44            173.79 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            10.06             13.58 
[1] "0.6 - 54.4 (10.1)"  "0.0 - 173.8 (13.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      4   14
  6Q GAIN WILD-TYPE   79  228
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               4                79
  MALE                14               228
D12V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                       0
  6Q GAIN WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                        0
  6Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q GAIN MUTATED                                        0
  6Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                         1
  6Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q GAIN MUTATED                                                            17
  6Q GAIN WILD-TYPE                                                         298
D12V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED     4  11   1   2
  6Q GAIN WILD-TYPE  74 185  32  16
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               4                74
  T2              11               185
  T3               1                32
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  6Q GAIN MUTATED    11   5   1   0
  6Q GAIN WILD-TYPE 190  86  25   5
D12V7, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              11               190
  N1               5                86
  N2               1                25
  N3               0                 5
                   vv
clus                 M0  M1  MX
  6Q GAIN MUTATED    16   0   2
  6Q GAIN WILD-TYPE 269   4  28
D12V8, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              16               269
  M1               0                 4
  MX               2                28
                   vv
clus                  I  II III  IV
  6Q GAIN MUTATED     9   5   4   0
  6Q GAIN WILD-TYPE 156  85  58   4
D12V9, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 9               156
  II                5                85
  III               4                58
  IV                0                 4
D12V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      1   17
  6Q GAIN WILD-TYPE   10  297
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                1                10
  YES              17               297
D12V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q GAIN MUTATED                                             9
  6Q GAIN WILD-TYPE                                         149
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q GAIN MUTATED                                        6              3
  6Q GAIN WILD-TYPE                                     68             69
                   vv
clus                LIFELONG NON-SMOKER
  6Q GAIN MUTATED                     0
  6Q GAIN WILD-TYPE                  14
D12V12, multiclass
                                             clus
vv                                            6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9               149
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    6                68
  CURRENT SMOKER                                            3                69
  LIFELONG NON-SMOKER                                       0                14
D12V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q GAIN MUTATED    15   1   1   0
  6Q GAIN WILD-TYPE 238   5   3  16
D12V14, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  R0              15               238
  R1               1                 5
  R2               1                 3
  RX               0                16

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    54  29
  7P GAIN WILD-TYPE 134  91
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               83               225 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               29                91 
$`7P GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 
       46.52        11.34        24.92        43.76         6.15         3.02 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 
       99.16        70.13        60.89        31.69         9.30        88.08 
TCGA-21-5784 TCGA-22-1012 TCGA-22-4591 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       29.85        14.10        20.45        24.13         0.56        38.17 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 
       31.69        63.52        44.22         0.79        11.74        18.84 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      114.05        97.94       173.79         2.63        28.96        31.23 
TCGA-34-5231 TCGA-34-5236 TCGA-34-5240 TCGA-34-5928 TCGA-37-3783 TCGA-37-4130 
       50.24         9.04         7.73         5.52         3.95         8.09 
TCGA-37-4135 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5031 TCGA-43-3394 
        6.81        47.80        74.07        44.71        27.35        11.57 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6771 TCGA-43-7657 TCGA-52-7809 TCGA-56-7223 
       18.84        18.05         5.42         1.58         5.85         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 
        1.45         0.85        82.19        68.45        29.19        16.83 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2742 TCGA-66-2755 TCGA-66-2767 
       24.10        22.78        11.77        21.07         0.92         2.01 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2800 TCGA-68-7755 TCGA-68-8250 TCGA-77-6845 
       12.00         1.94        49.05         2.73         8.02        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
       11.18        20.78        46.78        15.75        86.76        53.95 
TCGA-77-8148 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 
        9.63         0.33         0.79         1.12         0.59         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-90-7769 TCGA-92-7341 
        1.25         1.97         1.97         0.59         3.48 

$`7P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 
       12.16         4.47        81.07        79.46         4.80        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       59.51        28.34         1.61         2.79        90.51        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 
      115.59        46.88        34.78        15.55       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
        8.78        31.63        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31        64.21         1.74        27.02        48.82 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       35.08        48.33        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
        9.53        11.77        64.90        14.60        54.28        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       79.20        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 
       19.76        26.99        61.61        31.50        32.84        51.78 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       32.68        10.82        14.07        22.95         4.96         1.08 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 
        0.43         0.39         6.54         7.46         7.82         0.39 
TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        3.39        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 
       17.88        18.28        18.08        13.12         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 
        6.02         2.79         3.78         6.97        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 
        0.10         2.04         1.02         0.99         0.43         1.32 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.20         0.03        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       96.82        37.94        21.70        49.48        55.40         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       47.87        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 
        1.22        23.64        16.96        43.10         2.01         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        0.99         2.01         1.02         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7756 
        5.03        30.02        10.06        54.08         4.01         6.64 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 
        6.94         3.12        29.56        73.08        75.09        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 
        0.49        42.25        70.09       106.95         0.16         6.51 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 
      104.09        11.54        26.40        27.39         6.97        54.41 
TCGA-77-8154 TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-8048 
       35.90         0.36         0.33         1.61         0.03         0.85 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        1.45         1.78         1.35         1.55         2.93         3.29 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.33              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           173.79            141.34 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            15.75             13.02 
[1] "0.3 - 173.8 (15.8)" "0.0 - 141.3 (13.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     20   70
  7P GAIN WILD-TYPE   63  172
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              20                63
  MALE                70               172
D13V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                       3
  7P GAIN WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                        1
  7P GAIN WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P GAIN MUTATED                                        0
  7P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                         0
  7P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P GAIN MUTATED                                                            86
  7P GAIN WILD-TYPE                                                         229
D13V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P GAIN MUTATED    14  58  16   2
  7P GAIN WILD-TYPE  64 138  17  16
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              14                64
  T2              58               138
  T3              16                17
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  7P GAIN MUTATED    56  28   5   1
  7P GAIN WILD-TYPE 145  63  21   4
D13V7, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              56               145
  N1              28                63
  N2               5                21
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7P GAIN MUTATED    81   2   6
  7P GAIN WILD-TYPE 204   2  24
D13V8, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              81               204
  M1               2                 2
  MX               6                24
                   vv
clus                  I  II III  IV
  7P GAIN MUTATED    44  29  15   2
  7P GAIN WILD-TYPE 121  61  47   2
D13V9, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                44               121
  II               29                61
  III              15                47
  IV                2                 2
D13V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      2   88
  7P GAIN WILD-TYPE    9  226
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                2                 9
  YES              88               226
D13V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P GAIN MUTATED                                            39
  7P GAIN WILD-TYPE                                         119
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P GAIN MUTATED                                       21             22
  7P GAIN WILD-TYPE                                     53             50
                   vv
clus                LIFELONG NON-SMOKER
  7P GAIN MUTATED                     6
  7P GAIN WILD-TYPE                   8
D13V12, multiclass
                                             clus
vv                                            7P GAIN MUTATED 7P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              39               119
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   21                53
  CURRENT SMOKER                                           22                50
  LIFELONG NON-SMOKER                                       6                 8
D13V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7P GAIN MUTATED    74   0   1   5
  7P GAIN WILD-TYPE 179   6   3  11
D13V14, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  R0              74               179
  R1               0                 6
  R2               1                 3
  RX               5                11

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    53  27
  7Q GAIN WILD-TYPE 135  93
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               80               228 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               27                93 
$`7Q GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3417 TCGA-18-4083 TCGA-21-1075 TCGA-21-1076 
       46.52        11.34        24.92         6.15        70.13        60.89 
TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-22-1012 TCGA-22-4591 TCGA-22-4595 
       31.69         9.30        88.08        14.10        20.45        24.13 
TCGA-22-4599 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 
       38.17        31.69        63.52        44.22         0.79        11.74 
TCGA-22-5483 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-34-2596 TCGA-34-2600 
       18.84        16.60       114.05        97.94         2.63        61.61 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5240 TCGA-34-5928 
       28.96        31.23        50.24         9.04         7.73         5.52 
TCGA-34-7107 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 TCGA-39-5019 
        1.08         3.95         7.82         6.81        47.80        44.71 
TCGA-39-5027 TCGA-39-5031 TCGA-43-3394 TCGA-43-3920 TCGA-43-7657 TCGA-52-7809 
       60.76        27.35        11.57        18.84         1.58         5.85 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 
        0.99         1.45         0.85        82.19        68.45        29.19 
TCGA-60-2714 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2742 TCGA-66-2755 
       16.83        24.10        22.78        11.77        21.07         0.92 
TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 TCGA-66-2782 TCGA-66-2785 TCGA-66-2792 
       20.98         1.02         2.01        12.00         1.94        30.02 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 TCGA-77-7141 TCGA-77-7463 
       54.08        49.05         2.73        23.28         0.49        46.78 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8148 TCGA-77-8156 TCGA-85-6561 
       15.75        53.95        37.81         9.63         0.33         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-7950 TCGA-85-8049 TCGA-85-8070 
        1.12         0.59         1.15         1.97         1.97         1.41 
TCGA-90-7769 TCGA-92-7341 
        0.59         3.48 

$`7Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 
       12.16         4.47        81.07        79.46         4.80        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34         1.61        43.76         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 
        3.02        27.16       115.59        46.88        99.16        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
       15.55       122.43       119.80         8.78        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        27.02        48.82        35.08        48.33 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       11.77        64.90        14.60        54.28        71.34        79.20 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 
       30.08        62.86        56.32        82.98        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       26.99        31.50        32.84        51.78        32.68        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07        22.95         4.96         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 
        8.09         7.46         0.39         3.39        74.07        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       55.17        70.03         1.71        24.33         1.94        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       13.12         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 
        2.04         1.02         0.99         0.43         1.32         0.20 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.03        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       37.94        21.70        49.48        55.40         9.01        47.87 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       35.34        38.83        30.61         3.16        26.07         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       23.64        16.96        43.10         2.01         0.99         1.02 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        2.01         0.99         0.99        25.02         0.99         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       19.00        12.03         3.98        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 
       22.98         4.04        22.98         5.03        10.06         4.01 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 
       75.09        11.18        89.95        20.78        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 
      106.95         0.16         6.51        86.76        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-85-6560 TCGA-85-7697 
       27.39         6.97        54.41        35.90         0.36         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8052 TCGA-85-8071 
        1.61         0.03         1.25         0.85         0.53         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 
        1.55         2.93         3.29         2.70         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16         4.70        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.33              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           114.05            173.79 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           16.175            12.805 
[1] "0.3 - 114.0 (16.2)" "0.0 - 173.8 (12.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     18   67
  7Q GAIN WILD-TYPE   65  175
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              18                65
  MALE                67               175
D14V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                       2
  7Q GAIN WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                        1
  7Q GAIN WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q GAIN MUTATED                                        0
  7Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                         0
  7Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q GAIN MUTATED                                                            82
  7Q GAIN WILD-TYPE                                                         233
D14V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q GAIN MUTATED    11  56  14   4
  7Q GAIN WILD-TYPE  67 140  19  14
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              11                67
  T2              56               140
  T3              14                19
  T4               4                14
                   vv
clus                 N0  N1  N2  N3
  7Q GAIN MUTATED    50  25   9   1
  7Q GAIN WILD-TYPE 151  66  17   4
D14V7, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              50               151
  N1              25                66
  N2               9                17
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7Q GAIN MUTATED    78   2   4
  7Q GAIN WILD-TYPE 207   2  26
D14V8, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              78               207
  M1               2                 2
  MX               4                26
                   vv
clus                  I  II III  IV
  7Q GAIN MUTATED    38  26  19   2
  7Q GAIN WILD-TYPE 127  64  43   2
D14V9, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                38               127
  II               26                64
  III              19                43
  IV                2                 2
D14V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      2   83
  7Q GAIN WILD-TYPE    9  231
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                2                 9
  YES              83               231
D14V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q GAIN MUTATED                                            43
  7Q GAIN WILD-TYPE                                         115
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q GAIN MUTATED                                       16             20
  7Q GAIN WILD-TYPE                                     58             52
                   vv
clus                LIFELONG NON-SMOKER
  7Q GAIN MUTATED                     4
  7Q GAIN WILD-TYPE                  10
D14V12, multiclass
                                             clus
vv                                            7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              43               115
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   16                58
  CURRENT SMOKER                                           20                52
  LIFELONG NON-SMOKER                                       4                10
D14V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q GAIN MUTATED    72   0   1   3
  7Q GAIN WILD-TYPE 181   6   3  13
D14V14, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  R0              72               181
  R1               0                 6
  R2               1                 3
  RX               3                13

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    22  20
  8P GAIN WILD-TYPE 166 100
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               42               266 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               20               100 
$`8P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-21-5783 TCGA-21-5784 TCGA-22-4595 
       79.46         4.80        13.02        88.08        29.85        24.13 
TCGA-22-4596 TCGA-22-5482 TCGA-22-5489 TCGA-33-4532 TCGA-33-4587 TCGA-33-6737 
        0.56        11.74        62.86        82.98        54.44        19.76 
TCGA-34-5231 TCGA-34-5239 TCGA-34-5928 TCGA-34-7107 TCGA-37-4132 TCGA-39-5019 
       50.24        10.82         5.52         1.08         7.46        44.71 
TCGA-39-5024 TCGA-39-5029 TCGA-39-5034 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 
       70.03        24.33        36.39        18.08        18.84        18.05 
TCGA-52-7811 TCGA-56-1622 TCGA-60-2695 TCGA-60-2708 TCGA-60-2719 TCGA-60-2722 
        8.75        28.93        15.55        68.45        30.61        24.10 
TCGA-66-2773 TCGA-66-2788 TCGA-66-2793 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 
        3.02        22.98        10.06        89.95         0.49        70.09 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8143 TCGA-85-6560 TCGA-85-8287 
       46.78        15.75         6.51        26.40         0.36         1.45 

$`8P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
        9.30       119.80         8.78        31.63        21.57        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 
        0.79        54.28        71.34        79.20        18.84        30.08 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
      103.53       141.34        14.07        10.98        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       61.61        31.50        28.96        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       32.68         9.04         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 
        3.95         0.43         0.39         6.54         8.09         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 
        6.81         0.39         3.39        47.80        74.07        68.58 
TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       55.17        60.76         1.71         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       35.64         0.79        17.88        18.28        13.12        11.57 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        0.95         0.59         0.39         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        5.85        30.31        27.45         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.20         0.03         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        82.19        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
        9.01        47.87        16.83        35.34        38.83         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        25.97        40.01         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        30.02        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 
       75.09        23.28        11.18        20.78        42.25       106.95 
TCGA-77-7338 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        0.16        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       53.92        39.09        17.69       104.09        11.54        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 
        6.97         9.63        54.41        35.90         0.33         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-90-6837 
        0.46         1.18         0.43         0.36         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        1.55         2.93         0.59         3.29         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16         4.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 
       39.88        58.42         6.18         6.90         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.36              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            89.95            173.79 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           21.370            11.885 
[1] "0.4 - 90.0 (21.4)"  "0.0 - 173.8 (11.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     12   33
  8P GAIN WILD-TYPE   71  209
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              12                71
  MALE                33               209
D15V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                       2
  8P GAIN WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                        0
  8P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P GAIN MUTATED                                        0
  8P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                         1
  8P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P GAIN MUTATED                                                            42
  8P GAIN WILD-TYPE                                                         273
D15V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P GAIN MUTATED    10  28   3   4
  8P GAIN WILD-TYPE  68 168  30  14
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1              10                68
  T2              28               168
  T3               3                30
  T4               4                14
                   vv
clus                 N0  N1  N2  N3
  8P GAIN MUTATED    29  10   6   0
  8P GAIN WILD-TYPE 172  81  20   5
D15V7, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              29               172
  N1              10                81
  N2               6                20
  N3               0                 5
                   vv
clus                 M0  M1  MX
  8P GAIN MUTATED    41   2   1
  8P GAIN WILD-TYPE 244   2  29
D15V8, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              41               244
  M1               2                 2
  MX               1                29
                   vv
clus                  I  II III  IV
  8P GAIN MUTATED    21  11  10   2
  8P GAIN WILD-TYPE 144  79  52   2
D15V9, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                21               144
  II               11                79
  III              10                52
  IV                2                 2
D15V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      3   42
  8P GAIN WILD-TYPE    8  272
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                3                 8
  YES              42               272
D15V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P GAIN MUTATED                                            24
  8P GAIN WILD-TYPE                                         134
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P GAIN MUTATED                                       11              7
  8P GAIN WILD-TYPE                                     63             65
                   vv
clus                LIFELONG NON-SMOKER
  8P GAIN MUTATED                     2
  8P GAIN WILD-TYPE                  12
D15V12, multiclass
                                             clus
vv                                            8P GAIN MUTATED 8P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              24               134
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   11                63
  CURRENT SMOKER                                            7                65
  LIFELONG NON-SMOKER                                       2                12
D15V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8P GAIN MUTATED    39   0   0   0
  8P GAIN WILD-TYPE 214   6   4  16
D15V14, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  R0              39               214
  R1               0                 6
  R2               0                 4
  RX               0                16

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    50  40
  8Q GAIN WILD-TYPE 138  80
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               90               218 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               40                80 
$`8Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 
       79.46         4.80        11.34        13.02        28.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-5595 TCGA-21-1075 TCGA-21-1081 TCGA-21-1083 
        1.61        43.76        27.16        70.13         9.30         8.78 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-1016 TCGA-22-4595 TCGA-22-4596 
       88.08        29.85        10.82        27.02        24.13         0.56 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5473 TCGA-22-5478 TCGA-22-5481 TCGA-22-5482 
        9.53        11.77        63.52         0.79        79.20        11.74 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4589 TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 
       62.86        82.98        10.98        19.76        28.96        50.24 
TCGA-34-5239 TCGA-34-5928 TCGA-37-3789 TCGA-37-4132 TCGA-37-5819 TCGA-39-5019 
       10.82         5.52         0.43         7.46         3.39        44.71 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5034 TCGA-39-5035 TCGA-43-2578 
       70.03         1.71        24.33        36.39        15.58        18.08 
TCGA-43-3920 TCGA-43-5670 TCGA-43-7657 TCGA-52-7811 TCGA-56-1622 TCGA-56-6546 
       18.84        18.05         1.58         8.75        28.93         1.02 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2707 TCGA-60-2708 TCGA-60-2714 TCGA-60-2719 
        0.03        15.55        21.70        68.45        16.83        30.61 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2744 TCGA-66-2756 
       24.10        22.78         1.22        11.77         0.99         0.99 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2769 TCGA-66-2773 TCGA-66-2782 TCGA-66-2788 
        0.99         0.99         7.07         3.02        12.00        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-66-2800 TCGA-77-6844 TCGA-77-7139 
        4.04        22.98        10.06        49.05        75.09        89.95 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
        0.49        70.09       106.95        46.78        15.75         6.51 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8139 TCGA-77-8143 TCGA-77-8148 TCGA-85-6560 
       37.81        12.59       104.09        26.40         9.63         0.36 
TCGA-85-7950 TCGA-85-8287 TCGA-90-7767 TCGA-92-7341 TCGA-94-7943 TCGA-96-8169 
        1.97         1.45         2.93         3.48         4.70         6.18 

$`8Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-4083 
       12.16         4.47        81.07        46.52        59.51         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
        2.79        90.51         3.02       115.59        46.88        99.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 
       60.89        34.78        15.55        31.69       122.43       119.80 
TCGA-21-5782 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       31.63        21.57        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       48.33        38.17        34.75        13.12        32.02        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       31.69        64.90        14.60        44.22        54.28        71.34 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 
       18.84        30.08        56.32        16.60       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        61.61        31.50        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04         7.73        14.07        22.95 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         1.08         3.95         0.39         6.54         8.09 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 
        7.82         6.81         0.39        47.80        74.07        68.58 
TCGA-39-5022 TCGA-39-5027 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 
       55.17        60.76         1.94        27.35        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 
       17.88        18.28        13.12        11.57         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
        6.02         2.79         5.42         3.78         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
        0.39         2.07        17.79         5.85        30.31        27.45 
TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        0.10         2.04         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.32         0.85         0.20         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       96.82        37.94        82.19        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        38.83         3.16        26.07 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 
       23.64        16.96        43.10         2.01        21.07         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        2.01         0.92        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
        5.03        30.02        54.08         4.01         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 
        6.94         8.02         3.12        29.56        73.08        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7338 TCGA-77-8008 TCGA-77-8009 
       11.18        20.78        42.25         0.16        86.76        53.95 
TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 
       82.92        53.92        39.09        17.69        11.54        27.39 
TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 
        6.97        54.41        35.90         0.33         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 
        0.43         0.36         1.78         1.35         1.55         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        3.29         2.70         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 
        0.16        39.88        58.42         6.90         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.03 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           106.95            173.79 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           14.285            13.120 
[1] "0.0 - 107.0 (14.3)" "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     23   72
  8Q GAIN WILD-TYPE   60  170
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              23                60
  MALE                72               170
D16V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                       2
  8Q GAIN WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                        0
  8Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q GAIN MUTATED                                        0
  8Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                         0
  8Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q GAIN MUTATED                                                            93
  8Q GAIN WILD-TYPE                                                         222
D16V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q GAIN MUTATED    19  57  10   9
  8Q GAIN WILD-TYPE  59 139  23   9
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              19                59
  T2              57               139
  T3              10                23
  T4               9                 9
                   vv
clus                 N0  N1  N2  N3
  8Q GAIN MUTATED    54  29   9   1
  8Q GAIN WILD-TYPE 147  62  17   4
D16V7, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              54               147
  N1              29                62
  N2               9                17
  N3               1                 4
                   vv
clus                 M0  M1  MX
  8Q GAIN MUTATED    85   3   5
  8Q GAIN WILD-TYPE 200   1  25
D16V8, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              85               200
  M1               3                 1
  MX               5                25
                   vv
clus                  I  II III  IV
  8Q GAIN MUTATED    42  26  22   3
  8Q GAIN WILD-TYPE 123  64  40   1
D16V9, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                42               123
  II               26                64
  III              22                40
  IV                3                 1
D16V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      5   90
  8Q GAIN WILD-TYPE    6  224
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                5                 6
  YES              90               224
D16V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q GAIN MUTATED                                            52
  8Q GAIN WILD-TYPE                                         106
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q GAIN MUTATED                                       22             15
  8Q GAIN WILD-TYPE                                     52             57
                   vv
clus                LIFELONG NON-SMOKER
  8Q GAIN MUTATED                     5
  8Q GAIN WILD-TYPE                   9
D16V12, multiclass
                                             clus
vv                                            8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              52               106
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   22                52
  CURRENT SMOKER                                           15                57
  LIFELONG NON-SMOKER                                       5                 9
D16V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q GAIN MUTATED    82   1   0   2
  8Q GAIN WILD-TYPE 171   5   4  14
D16V14, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  R0              82               171
  R1               1                 5
  R2               0                 4
  RX               2                14

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    13   6
  9P GAIN WILD-TYPE 175 114
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               19               289 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6               114 
$`9P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3416 TCGA-22-5481 TCGA-33-4566 TCGA-33-4583 TCGA-33-4589 
        4.80        28.34        79.20       173.79       141.34        10.98 
TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 TCGA-43-6143 
       10.82         7.73         1.08         0.39         7.82         7.00 
TCGA-43-7658 TCGA-51-4079 TCGA-52-7622 TCGA-60-2695 TCGA-60-2722 TCGA-77-7465 
       66.51         0.39        17.79        15.55        24.10        15.75 
TCGA-92-8064 
        5.26 

$`9P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       54.28        71.34        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
      103.53        14.07        54.44        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68         9.04        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        4.96         3.95         0.43         6.54         8.09         7.46 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        6.97         1.58         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.59         0.39         2.07         5.85        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
        0.03         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        1.55         2.93         0.59         3.29         2.70         3.48 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        4.01         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.39              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           173.79            122.43 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            10.98             13.12 
[1] "0.4 - 173.8 (11.0)" "0.0 - 122.4 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      7   12
  9P GAIN WILD-TYPE   76  230
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               7                76
  MALE                12               230
D17V4, continuous
[1] "Remove cluster labels:" "9P GAIN MUTATED"       
clus
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                2                52 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3414        TCGA-18-3419 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5787        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4135        TCGA-37-5819        TCGA-43-2576 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7810        TCGA-56-7222        TCGA-56-7822        TCGA-60-2696 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723        TCGA-85-7843 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-92-7340        TCGA-92-7341        TCGA-98-7454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                       3
  9P GAIN WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                        0
  9P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P GAIN MUTATED                                        0
  9P GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                         0
  9P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P GAIN MUTATED                                                            16
  9P GAIN WILD-TYPE                                                         299
D17V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P GAIN MUTATED     3  13   1   2
  9P GAIN WILD-TYPE  75 183  32  16
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               3                75
  T2              13               183
  T3               1                32
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  9P GAIN MUTATED    13   6   0   0
  9P GAIN WILD-TYPE 188  85  26   5
D17V7, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              13               188
  N1               6                85
  N2               0                26
  N3               0                 5
                   vv
clus                 M0  M1  MX
  9P GAIN MUTATED    17   0   1
  9P GAIN WILD-TYPE 268   4  29
D17V8, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              17               268
  M1               0                 4
  MX               1                29
                   vv
clus                  I  II III  IV
  9P GAIN MUTATED     9   7   3   0
  9P GAIN WILD-TYPE 156  83  59   4
D17V9, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 9               156
  II                7                83
  III               3                59
  IV                0                 4
D17V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0   19
  9P GAIN WILD-TYPE   11  295
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                11
  YES              19               295
D17V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P GAIN MUTATED                                             8
  9P GAIN WILD-TYPE                                         150
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P GAIN MUTATED                                        5              4
  9P GAIN WILD-TYPE                                     69             68
                   vv
clus                LIFELONG NON-SMOKER
  9P GAIN MUTATED                     1
  9P GAIN WILD-TYPE                  13
D17V12, multiclass
                                             clus
vv                                            9P GAIN MUTATED 9P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               8               150
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                69
  CURRENT SMOKER                                            4                68
  LIFELONG NON-SMOKER                                       1                13
D17V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9P GAIN MUTATED    12   0   0   2
  9P GAIN WILD-TYPE 241   6   4  14
D17V14, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  R0              12               241
  R1               0                 6
  R2               0                 4
  RX               2                14

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    19   9
  9Q GAIN WILD-TYPE 169 111
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               280 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                9               111 
$`9Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3416 TCGA-22-5483 TCGA-33-4566 TCGA-33-4583 TCGA-33-4589 
        4.80        28.34        18.84       173.79       141.34        10.98 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5239 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 
        2.63        61.61        10.82         1.08         0.39         7.82 
TCGA-39-5036 TCGA-43-3394 TCGA-43-6143 TCGA-43-7658 TCGA-51-4079 TCGA-52-7622 
       35.64        11.57         7.00        66.51         0.39        17.79 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2710 TCGA-60-2722 TCGA-66-2744 TCGA-66-2770 
        0.85        15.55        55.40        24.10         0.99        23.01 
TCGA-66-2792 TCGA-77-7335 TCGA-77-7465 TCGA-77-8144 
       30.02        70.09        15.75        27.39 

$`9Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       54.28        71.34        79.20        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 
      103.53        14.07        54.44        19.76        26.99        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 
        3.95         0.43         6.54         8.09         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       27.35        36.39        15.58         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       18.08        13.12        18.84         8.48        18.05         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 
        2.79         5.42         3.78         6.97         1.58         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
        6.35         9.96         0.95         0.59         0.39         2.07 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.85        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.32         0.20         0.03         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 
       11.77        16.96        43.10         2.01        21.07         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98         5.03        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        42.25       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        1.78         1.35         1.55         2.93         0.59         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.39              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           173.79            122.43 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           16.770            12.805 
[1] "0.4 - 173.8 (16.8)" "0.0 - 122.4 (12.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      8   20
  9Q GAIN WILD-TYPE   75  222
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               8                75
  MALE                20               222
D18V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                       2
  9Q GAIN WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                        0
  9Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q GAIN MUTATED                                        0
  9Q GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                         0
  9Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q GAIN MUTATED                                                            26
  9Q GAIN WILD-TYPE                                                         289
D18V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q GAIN MUTATED     6  18   1   3
  9Q GAIN WILD-TYPE  72 178  32  15
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               6                72
  T2              18               178
  T3               1                32
  T4               3                15
                   vv
clus                 N0  N1  N2  N3
  9Q GAIN MUTATED    18   9   1   0
  9Q GAIN WILD-TYPE 183  82  25   5
D18V7, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              18               183
  N1               9                82
  N2               1                25
  N3               0                 5
                   vv
clus                 M0  M1  MX
  9Q GAIN MUTATED    27   0   0
  9Q GAIN WILD-TYPE 258   4  30
D18V8, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              27               258
  M1               0                 4
  MX               0                30
                   vv
clus                  I  II III  IV
  9Q GAIN MUTATED    14  10   4   0
  9Q GAIN WILD-TYPE 151  80  58   4
D18V9, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                14               151
  II               10                80
  III               4                58
  IV                0                 4
D18V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0   28
  9Q GAIN WILD-TYPE   11  286
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                11
  YES              28               286
D18V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q GAIN MUTATED                                            12
  9Q GAIN WILD-TYPE                                         146
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q GAIN MUTATED                                        9              5
  9Q GAIN WILD-TYPE                                     65             67
                   vv
clus                LIFELONG NON-SMOKER
  9Q GAIN MUTATED                     1
  9Q GAIN WILD-TYPE                  13
D18V12, multiclass
                                             clus
vv                                            9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              12               146
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                65
  CURRENT SMOKER                                            5                67
  LIFELONG NON-SMOKER                                       1                13
D18V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q GAIN MUTATED    22   0   0   1
  9Q GAIN WILD-TYPE 231   6   4  15
D18V14, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  R0              22               231
  R1               0                 6
  R2               0                 4
  RX               1                15

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    10   7
  10P GAIN WILD-TYPE 178 113
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                17                291 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 7                113 
$`10P GAIN MUTATED`
TCGA-18-3416 TCGA-18-3417 TCGA-21-5787 TCGA-22-5473 TCGA-33-4566 TCGA-33-6737 
       28.34        24.92        10.82        63.52       173.79        19.76 
TCGA-34-5928 TCGA-34-7107 TCGA-37-4133 TCGA-43-5670 TCGA-56-7222 TCGA-66-2778 
        5.52         1.08         7.82        18.05         0.43        19.00 
TCGA-77-7140 TCGA-77-8143 TCGA-85-6560 TCGA-94-7943 TCGA-98-8022 
       20.78        26.40         0.36         4.70         7.33 

$`10P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       11.34        13.02        59.51         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        21.57        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       64.90        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
      141.34        14.07        54.44        10.98        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       22.95         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 
       28.93         0.10         2.04         1.02         0.99         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 
        1.45         1.32         0.85         0.20         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         3.02         2.01        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.95         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       11.54        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.33         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.03         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
        3.78        13.58        10.13 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.36               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            173.79             141.34 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             18.05              13.12 
[1] "0.4 - 173.8 (18.1)" "0.0 - 141.3 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      4   13
  10P GAIN WILD-TYPE   79  229
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                4                 79
  MALE                 13                229
D19V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                       0
  10P GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                        0
  10P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P GAIN MUTATED                                        0
  10P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                         0
  10P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P GAIN MUTATED                                                            17
  10P GAIN WILD-TYPE                                                         298
D19V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED     2  13   1   1
  10P GAIN WILD-TYPE  76 183  32  17
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                2                 76
  T2               13                183
  T3                1                 32
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  10P GAIN MUTATED     7   5   3   1
  10P GAIN WILD-TYPE 194  86  23   4
D19V7, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                7                194
  N1                5                 86
  N2                3                 23
  N3                1                  4
                    vv
clus                  M0  M1  MX
  10P GAIN MUTATED    14   1   1
  10P GAIN WILD-TYPE 271   3  29
D19V8, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               14                271
  M1                1                  3
  MX                1                 29
                    vv
clus                   I  II III  IV
  10P GAIN MUTATED     4   5   6   1
  10P GAIN WILD-TYPE 161  85  56   3
D19V9, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                  4                161
  II                 5                 85
  III                6                 56
  IV                 1                  3
D19V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1   16
  10P GAIN WILD-TYPE   10  298
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 1                 10
  YES               16                298
D19V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P GAIN MUTATED                                             7
  10P GAIN WILD-TYPE                                         151
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P GAIN MUTATED                                        7              2
  10P GAIN WILD-TYPE                                     67             70
                    vv
clus                 LIFELONG NON-SMOKER
  10P GAIN MUTATED                     1
  10P GAIN WILD-TYPE                  13
D19V12, multiclass
                                             clus
vv                                            10P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            10P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                151
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      67
  CURRENT SMOKER                                              70
  LIFELONG NON-SMOKER                                         13
D19V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10P GAIN MUTATED    11   0   1   0
  10P GAIN WILD-TYPE 242   6   3  16
D19V14, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  R0               11                242
  R1                0                  6
  R2                1                  3
  RX                0                 16

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     3   4
  10Q GAIN WILD-TYPE 185 116
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 7                301 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 4                116 
$`10Q GAIN MUTATED`
TCGA-18-3416 TCGA-21-5787 TCGA-22-5473 TCGA-33-4566 TCGA-34-5928 TCGA-43-5670 
       28.34        10.82        63.52       173.79         5.52        18.05 
TCGA-77-7140 
       20.78 

$`10Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       88.08        29.85        21.57        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.69        64.90        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        0.95         0.59         0.39         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.85        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        1.32         0.85         0.20         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.95         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        2.93         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              5.52               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            173.79             141.34 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             20.78              13.02 
[1] "5.5 - 173.8 (20.8)" "0.0 - 141.3 (13.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
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        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2    5
  10Q GAIN WILD-TYPE   81  237
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                2                 81
  MALE                  5                237
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                 52 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5783         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4613         TCGA-22-5472 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5482         TCGA-22-5483 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5485         TCGA-22-5489         TCGA-22-5491 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5492         TCGA-34-5234         TCGA-37-4129 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-5819         TCGA-43-2576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-56-7222         TCGA-56-7822 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2698         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2725         TCGA-60-2726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-70-6722         TCGA-70-6723         TCGA-85-7843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7844         TCGA-92-7340         TCGA-92-7341 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-7454 
"10Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                       0
  10Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                        0
  10Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q GAIN MUTATED                                        0
  10Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                         0
  10Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q GAIN MUTATED                                                             7
  10Q GAIN WILD-TYPE                                                         308
D20V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     0   6   1   0
  10Q GAIN WILD-TYPE  78 190  32  18
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                0                 78
  T2                6                190
  T3                1                 32
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED     3   3   1   0
  10Q GAIN WILD-TYPE 198  88  25   5
D20V7, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                3                198
  N1                3                 88
  N2                1                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  10Q GAIN MUTATED     7   0   0
  10Q GAIN WILD-TYPE 278   4  30
D20V8, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                7                278
  M1                0                  4
  MX                0                 30
                    vv
clus                   I  II III  IV
  10Q GAIN MUTATED     2   4   1   0
  10Q GAIN WILD-TYPE 163  86  61   4
D20V9, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                  2                163
  II                 4                 86
  III                1                 61
  IV                 0                  4
D20V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    6
  10Q GAIN WILD-TYPE   10  308
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 10
  YES                6                308
D20V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q GAIN MUTATED                                             1
  10Q GAIN WILD-TYPE                                         157
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q GAIN MUTATED                                        4              1
  10Q GAIN WILD-TYPE                                     70             71
                    vv
clus                 LIFELONG NON-SMOKER
  10Q GAIN MUTATED                     1
  10Q GAIN WILD-TYPE                  13
D20V12, multiclass
                                             clus
vv                                            10Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            10Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                157
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      70
  CURRENT SMOKER                                              71
  LIFELONG NON-SMOKER                                         13
D20V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q GAIN MUTATED     5   0   0   0
  10Q GAIN WILD-TYPE 248   6   4  16
D20V14, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  R0                5                248
  R1                0                  6
  R2                0                  4
  RX                0                 16

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    13   7
  11P GAIN WILD-TYPE 175 113
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                20                288 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 7                113 
$`11P GAIN MUTATED`
TCGA-18-3410 TCGA-21-1072 TCGA-21-1079 TCGA-21-5783 TCGA-22-4591 TCGA-22-4595 
        4.80        99.16        31.69        88.08        20.45        24.13 
TCGA-34-5239 TCGA-39-5027 TCGA-39-5034 TCGA-56-7730 TCGA-60-2720 TCGA-60-2722 
       10.82        60.76        36.39         0.20         3.16        24.10 
TCGA-66-2744 TCGA-66-2765 TCGA-66-2766 TCGA-66-2770 TCGA-66-2785 TCGA-77-6845 
        0.99         2.01         1.02        23.01         1.94        23.28 
TCGA-90-7767 TCGA-96-8169 
        2.93         6.18 

$`11P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
        9.30       119.80         8.78        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
        1.74        14.10        27.02        48.82        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       70.03         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39         2.07        17.79         5.85        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        0.43         0.99         1.45         1.32         0.85         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10         2.01        21.07         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 
        8.02         3.12        29.56        73.08        75.09        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         6.90         3.78        13.58         7.33        10.13 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.20               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             99.16             173.79 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            15.635             13.120 
[1] "0.2 - 99.2 (15.6)"  "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      3   17
  11P GAIN WILD-TYPE   80  225
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                3                 80
  MALE                 17                225
D21V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                       0
  11P GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                        0
  11P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P GAIN MUTATED                                        0
  11P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                         0
  11P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P GAIN MUTATED                                                            20
  11P GAIN WILD-TYPE                                                         295
D21V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED     1  12   6   1
  11P GAIN WILD-TYPE  77 184  27  17
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                1                 77
  T2               12                184
  T3                6                 27
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED    14   3   3   0
  11P GAIN WILD-TYPE 187  88  23   5
D21V7, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               14                187
  N1                3                 88
  N2                3                 23
  N3                0                  5
                    vv
clus                  M0  M1  MX
  11P GAIN MUTATED    18   0   1
  11P GAIN WILD-TYPE 267   4  29
D21V8, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               18                267
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  11P GAIN MUTATED     8   6   6   0
  11P GAIN WILD-TYPE 157  84  56   4
D21V9, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                  8                157
  II                 6                 84
  III                6                 56
  IV                 0                  4
D21V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1   19
  11P GAIN WILD-TYPE   10  295
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 1                 10
  YES               19                295
D21V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P GAIN MUTATED                                            11
  11P GAIN WILD-TYPE                                         147
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P GAIN MUTATED                                        5              3
  11P GAIN WILD-TYPE                                     69             69
                    vv
clus                 LIFELONG NON-SMOKER
  11P GAIN MUTATED                     0
  11P GAIN WILD-TYPE                  14
D21V12, multiclass
                                             clus
vv                                            11P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            11P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                147
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      69
  CURRENT SMOKER                                              69
  LIFELONG NON-SMOKER                                         14
D21V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11P GAIN MUTATED    16   0   0   0
  11P GAIN WILD-TYPE 237   6   4  16
D21V14, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  R0               16                237
  R1                0                  6
  R2                0                  4
  RX                0                 16

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    14   8
  11Q GAIN WILD-TYPE 174 112
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                22                286 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 8                112 
$`11Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1072 TCGA-21-1079 TCGA-22-4591 TCGA-22-4595 TCGA-37-4135 
        4.80        99.16        31.69        20.45        24.13         6.81 
TCGA-37-5819 TCGA-39-5034 TCGA-43-5670 TCGA-43-6143 TCGA-56-7730 TCGA-60-2720 
        3.39        36.39        18.05         7.00         0.20         3.16 
TCGA-66-2737 TCGA-66-2763 TCGA-66-2789 TCGA-77-6845 TCGA-77-7141 TCGA-77-7337 
        2.01         0.99         4.04        23.28         0.49       106.95 
TCGA-77-8154 TCGA-85-6560 TCGA-85-7843 TCGA-94-7943 
       35.90         0.36         1.15         4.70 

$`11Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       13.12        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 
        0.99         1.45         1.32         0.85         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 
       47.87        16.83        35.34        38.83        30.61        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 
        1.94        25.97        40.01        22.98        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 
       75.09        11.18        89.95        20.78        42.25        70.09 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       54.41         0.33         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.20               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            106.95             173.79 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             5.805             13.825 
[1] "0.2 - 107.0 (5.8)"  "0.0 - 173.8 (13.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3   19
  11Q GAIN WILD-TYPE   80  223
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                3                 80
  MALE                 19                223
D22V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                       1
  11Q GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                        0
  11Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q GAIN MUTATED                                        0
  11Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                         0
  11Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q GAIN MUTATED                                                            21
  11Q GAIN WILD-TYPE                                                         294
D22V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED     3  13   6   0
  11Q GAIN WILD-TYPE  75 183  27  18
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                3                 75
  T2               13                183
  T3                6                 27
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED    13   4   3   1
  11Q GAIN WILD-TYPE 188  87  23   4
D22V7, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               13                188
  N1                4                 87
  N2                3                 23
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11Q GAIN MUTATED    20   0   1
  11Q GAIN WILD-TYPE 265   4  29
D22V8, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               20                265
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  11Q GAIN MUTATED     7   7   8   0
  11Q GAIN WILD-TYPE 158  83  54   4
D22V9, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                  7                158
  II                 7                 83
  III                8                 54
  IV                 0                  4
D22V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1   21
  11Q GAIN WILD-TYPE   10  293
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 1                 10
  YES               21                293
D22V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q GAIN MUTATED                                            10
  11Q GAIN WILD-TYPE                                         148
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q GAIN MUTATED                                        8              4
  11Q GAIN WILD-TYPE                                     66             68
                    vv
clus                 LIFELONG NON-SMOKER
  11Q GAIN MUTATED                     0
  11Q GAIN WILD-TYPE                  14
D22V12, multiclass
                                             clus
vv                                            11Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            11Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                148
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      66
  CURRENT SMOKER                                              68
  LIFELONG NON-SMOKER                                         14
D22V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q GAIN MUTATED    19   0   0   1
  11Q GAIN WILD-TYPE 234   6   4  15
D22V14, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  R0               19                234
  R1                0                  6
  R2                0                  4
  RX                1                 15

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    52  34
  12P GAIN WILD-TYPE 136  86
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                86                222 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                34                 86 
$`12P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-21-1072 TCGA-21-1079 TCGA-21-5782 
        4.80        11.34        24.92        99.16        31.69        31.63 
TCGA-21-5786 TCGA-22-1012 TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 
       21.57        14.10        20.45        24.13        38.17        13.12 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5489 TCGA-33-4538 TCGA-33-4566 
       31.69        63.52        44.22        62.86        97.94       173.79 
TCGA-33-4582 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      103.53        19.76        26.99         2.63        28.96        31.23 
TCGA-34-5231 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-39-5019 TCGA-39-5021 
       50.24         7.73        14.07         1.08        44.71        68.58 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-5670 
       36.39        15.58        35.64         0.79        11.57        18.05 
TCGA-43-6770 TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-52-7811 
        2.79         6.35         0.95         0.59         2.07         8.75 
TCGA-56-7222 TCGA-56-7582 TCGA-56-7730 TCGA-60-2695 TCGA-60-2698 TCGA-60-2703 
        0.43         0.85         0.20        15.55        10.22        96.82 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2723 TCGA-60-2726 TCGA-66-2744 
       82.19        68.45        29.19        22.78        11.77         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 
        2.01         0.99        20.98         1.02         2.01         7.07 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2794 TCGA-68-8250 TCGA-77-6842 TCGA-77-7140 
        3.98         1.94        54.08         8.02        29.56        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
        0.49        42.25       106.95        46.78        15.75        37.81 
TCGA-77-8133 TCGA-77-8138 TCGA-77-8148 TCGA-77-8156 TCGA-85-6560 TCGA-85-7699 
       53.92        17.69         9.63         0.33         0.36         0.03 
TCGA-85-7950 TCGA-85-8049 TCGA-85-8277 TCGA-85-8287 TCGA-90-7767 TCGA-90-7769 
        1.97         1.97         0.36         1.45         2.93         0.59 
TCGA-92-7341 TCGA-94-7943 
        3.48         4.70 

$`12P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 
       90.51         3.02        27.16       115.59        46.88        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
        8.78        88.08        29.85        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31        64.21         1.74        27.02        48.82 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       35.08        48.33         0.56        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
        9.53        11.77        64.90        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 
       71.34        79.20        11.74        18.84        30.08        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4583 TCGA-33-4586 
       16.60        82.98       114.05        43.10       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 
       54.44        10.98        61.61        31.50        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       32.68         9.04        10.82        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
       27.35        17.88        18.28        18.08        13.12        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        8.48         7.00         6.02         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 
        1.58        66.51         6.64         9.96         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.85        30.31        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        2.04         1.02         0.99         0.99         1.45         1.32 
TCGA-56-7822 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 
        0.03         3.58        12.23        37.94        21.70        49.48 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       55.40         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 
       16.96        43.10         2.01        21.07         1.02         0.92 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2770 
        0.99        25.02         0.99         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       19.00         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        30.02        10.06         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.64         6.94         3.12        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7335 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 
       11.18        89.95        70.09         0.16         6.51        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 
       53.95        82.92        12.59        39.09       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-85-6561 
       26.40        27.39         6.97        54.41        35.90         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         0.33         1.61         1.15         1.25 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        0.85         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 
        1.78         1.35         1.55         3.29         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.03               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            173.79             141.34 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            14.825             12.410 
[1] "0.0 - 173.8 (14.8)" "0.0 - 141.3 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     13   77
  12P GAIN WILD-TYPE   70  165
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               13                 70
  MALE                 77                165
D23V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                       2
  12P GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                        0
  12P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P GAIN MUTATED                                        0
  12P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                         0
  12P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P GAIN MUTATED                                                            88
  12P GAIN WILD-TYPE                                                         227
D23V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P GAIN MUTATED    15  62   7   6
  12P GAIN WILD-TYPE  63 134  26  12
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               15                 63
  T2               62                134
  T3                7                 26
  T4                6                 12
                    vv
clus                  N0  N1  N2  N3
  12P GAIN MUTATED    53  26   9   1
  12P GAIN WILD-TYPE 148  65  17   4
D23V7, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               53                148
  N1               26                 65
  N2                9                 17
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12P GAIN MUTATED    80   1   7
  12P GAIN WILD-TYPE 205   3  23
D23V8, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               80                205
  M1                1                  3
  MX                7                 23
                    vv
clus                   I  II III  IV
  12P GAIN MUTATED    43  27  18   1
  12P GAIN WILD-TYPE 122  63  44   3
D23V9, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                 43                122
  II                27                 63
  III               18                 44
  IV                 1                  3
D23V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      4   86
  12P GAIN WILD-TYPE    7  228
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 4                  7
  YES               86                228
D23V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P GAIN MUTATED                                            42
  12P GAIN WILD-TYPE                                         116
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P GAIN MUTATED                                       18             26
  12P GAIN WILD-TYPE                                     56             46
                    vv
clus                 LIFELONG NON-SMOKER
  12P GAIN MUTATED                     4
  12P GAIN WILD-TYPE                  10
D23V12, multiclass
                                             clus
vv                                            12P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               42
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    18
  CURRENT SMOKER                                            26
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            12P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                116
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                              46
  LIFELONG NON-SMOKER                                         10
D23V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12P GAIN MUTATED    68   2   2   4
  12P GAIN WILD-TYPE 185   4   2  12
D23V14, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  R0               68                185
  R1                2                  4
  R2                2                  2
  RX                4                 12

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    26  12
  12Q GAIN WILD-TYPE 162 108
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                38                270 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                12                108 
$`12Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-21-1072 TCGA-22-4591 TCGA-22-4604 
        4.80        11.34        24.92        99.16        20.45        13.12 
TCGA-22-5471 TCGA-22-5473 TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 TCGA-34-5231 
       31.69        63.52        19.76         2.63        28.96        50.24 
TCGA-37-5819 TCGA-39-5019 TCGA-39-5035 TCGA-39-5036 TCGA-46-6025 TCGA-56-7582 
        3.39        44.71        15.58        35.64         0.95         0.85 
TCGA-60-2695 TCGA-60-2698 TCGA-60-2706 TCGA-60-2708 TCGA-66-2754 TCGA-66-2756 
       15.55        10.22        82.19        68.45         2.01         0.99 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2781 TCGA-66-2794 TCGA-77-6842 TCGA-77-7140 
        1.02         2.01         3.98        54.08        29.56        20.78 
TCGA-77-7465 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-85-7950 TCGA-85-8049 
       15.75         9.63        54.41        35.90         1.97         1.97 
TCGA-90-7769 TCGA-94-7943 
        0.59         4.70 

$`12Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 
       90.51         3.02        27.16       115.59        46.88        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
        1.74        14.10        27.02        48.82        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
        9.53        11.77        64.90        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       10.98        26.99        61.61        31.50        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        47.80        74.07        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.84         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        6.35         9.96         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.85        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.20         0.03         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       96.82        37.94        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        1.02         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00        12.03        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        10.06         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02         3.12        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       11.18        89.95         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
        0.16        46.78         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8156 TCGA-85-6560 
       11.54        26.40        27.39         6.97         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.15         1.25         0.85         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         2.93         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.59               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             99.16             173.79 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            15.565             12.805 
[1] "0.6 - 99.2 (15.6)"  "0.0 - 173.8 (12.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
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        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      4   37
  12Q GAIN WILD-TYPE   79  205
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                4                 79
  MALE                 37                205
D24V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                       1
  12Q GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                        0
  12Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q GAIN MUTATED                                        0
  12Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                         0
  12Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q GAIN MUTATED                                                            40
  12Q GAIN WILD-TYPE                                                         275
D24V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN MUTATED     6  26   5   4
  12Q GAIN WILD-TYPE  72 170  28  14
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                6                 72
  T2               26                170
  T3                5                 28
  T4                4                 14
                    vv
clus                  N0  N1  N2  N3
  12Q GAIN MUTATED    19  14   6   1
  12Q GAIN WILD-TYPE 182  77  20   4
D24V7, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               19                182
  N1               14                 77
  N2                6                 20
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12Q GAIN MUTATED    38   1   2
  12Q GAIN WILD-TYPE 247   3  28
D24V8, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               38                247
  M1                1                  3
  MX                2                 28
                    vv
clus                   I  II III  IV
  12Q GAIN MUTATED    17  11  12   1
  12Q GAIN WILD-TYPE 148  79  50   3
D24V9, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                 17                148
  II                11                 79
  III               12                 50
  IV                 1                  3
D24V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      2   39
  12Q GAIN WILD-TYPE    9  275
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 2                  9
  YES               39                275
D24V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q GAIN MUTATED                                            20
  12Q GAIN WILD-TYPE                                         138
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q GAIN MUTATED                                       12              6
  12Q GAIN WILD-TYPE                                     62             66
                    vv
clus                 LIFELONG NON-SMOKER
  12Q GAIN MUTATED                     3
  12Q GAIN WILD-TYPE                  11
D24V12, multiclass
                                             clus
vv                                            12Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               20
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            12Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                138
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      62
  CURRENT SMOKER                                              66
  LIFELONG NON-SMOKER                                         11
D24V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q GAIN MUTATED    33   1   1   2
  12Q GAIN WILD-TYPE 220   5   3  14
D24V14, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  R0               33                220
  R1                1                  5
  R2                1                  3
  RX                2                 14

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED     5   3
  13Q GAIN WILD-TYPE 183 117
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 8                300 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 3                117 
$`13Q GAIN MUTATED`
TCGA-18-3412 TCGA-21-1079 TCGA-21-1081 TCGA-21-5786 TCGA-39-5035 TCGA-56-7223 
       11.34        31.69         9.30        21.57        15.58         0.99 
TCGA-85-7696 TCGA-94-7943 
        0.59         4.70 

$`13Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        36.39        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.85        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        1.32         0.85         0.20         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        2.93         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.59               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             31.69             173.79 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             10.32              13.35 
[1] "0.6 - 31.7 (10.3)"  "0.0 - 173.8 (13.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
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        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1    7
  13Q GAIN WILD-TYPE   82  235
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                1                 82
  MALE                  7                235
D25V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                       0
  13Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                        0
  13Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q GAIN MUTATED                                        0
  13Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                         0
  13Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q GAIN MUTATED                                                             8
  13Q GAIN WILD-TYPE                                                         307
D25V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED     3   3   2   0
  13Q GAIN WILD-TYPE  75 193  31  18
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                3                 75
  T2                3                193
  T3                2                 31
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  13Q GAIN MUTATED     5   2   0   0
  13Q GAIN WILD-TYPE 196  89  26   5
D25V7, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                5                196
  N1                2                 89
  N2                0                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  13Q GAIN MUTATED     6   0   2
  13Q GAIN WILD-TYPE 279   4  28
D25V8, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0                6                279
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  13Q GAIN MUTATED     5   1   2   0
  13Q GAIN WILD-TYPE 160  89  60   4
D25V9, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  5                160
  II                 1                 89
  III                2                 60
  IV                 0                  4
D25V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      0    8
  13Q GAIN WILD-TYPE   11  306
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 0                 11
  YES                8                306
D25V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q GAIN MUTATED                                             2
  13Q GAIN WILD-TYPE                                         156
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q GAIN MUTATED                                        5              1
  13Q GAIN WILD-TYPE                                     69             71
                    vv
clus                 LIFELONG NON-SMOKER
  13Q GAIN MUTATED                     0
  13Q GAIN WILD-TYPE                  14
D25V12, multiclass
                                             clus
vv                                            13Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            13Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                156
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      69
  CURRENT SMOKER                                              71
  LIFELONG NON-SMOKER                                         14
D25V13, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q GAIN MUTATED     8   0   0   0
  13Q GAIN WILD-TYPE 245   6   4  16
D25V14, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  R0                8                245
  R1                0                  6
  R2                0                  4
  RX                0                 16

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    19   9
  14Q GAIN WILD-TYPE 169 111
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                28                280 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 9                111 
$`14Q GAIN MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-3421 TCGA-21-1079 TCGA-22-4591 TCGA-22-4595 
       46.52        59.51        43.76        31.69        20.45        24.13 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 TCGA-33-4589 TCGA-39-5029 TCGA-39-5031 
       82.98       114.05       173.79        10.98        24.33        27.35 
TCGA-43-6143 TCGA-51-4081 TCGA-52-7811 TCGA-56-1622 TCGA-60-2706 TCGA-60-2707 
        7.00         2.07         8.75        28.93        82.19        21.70 
TCGA-60-2708 TCGA-60-2722 TCGA-66-2756 TCGA-66-2763 TCGA-66-2788 TCGA-66-2792 
       68.45        24.10         0.99         0.99        22.98        30.02 
TCGA-77-8139 TCGA-77-8143 TCGA-85-6561 TCGA-92-7340 
      104.09        26.40         0.79         2.70 

$`14Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 
       13.02        28.34        24.92         1.61         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       70.13        60.89        34.78        15.55       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
        1.74        14.10        27.02        48.82        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 
       18.84        30.08        62.86        56.32        16.60        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 
       43.10       103.53       141.34        14.07        54.44        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57        18.84         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.59         0.39         0.39        17.79         5.85        30.31 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       27.45         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        38.83        30.61         3.16        26.07        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       40.01         4.04        22.98         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       11.54        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.33         0.36         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.03         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        3.29         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.79               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            173.79             141.34 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            25.365             12.015 
[1] "0.8 - 173.8 (25.4)" "0.0 - 141.3 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      7   24
  14Q GAIN WILD-TYPE   76  218
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE                7                 76
  MALE                 24                218
D26V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                       1
  14Q GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                        0
  14Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q GAIN MUTATED                                        0
  14Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                         0
  14Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q GAIN MUTATED                                                            30
  14Q GAIN WILD-TYPE                                                         285
D26V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q GAIN MUTATED     5  20   5   1
  14Q GAIN WILD-TYPE  73 176  28  17
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1                5                 73
  T2               20                176
  T3                5                 28
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  14Q GAIN MUTATED    19   7   5   0
  14Q GAIN WILD-TYPE 182  84  21   5
D26V7, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               19                182
  N1                7                 84
  N2                5                 21
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q GAIN MUTATED    29   0   1
  14Q GAIN WILD-TYPE 256   4  29
D26V8, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               29                256
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  14Q GAIN MUTATED    15   8   8   0
  14Q GAIN WILD-TYPE 150  82  54   4
D26V9, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                 15                150
  II                 8                 82
  III                8                 54
  IV                 0                  4
D26V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      1   30
  14Q GAIN WILD-TYPE   10  284
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 1                 10
  YES               30                284
D26V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q GAIN MUTATED                                            15
  14Q GAIN WILD-TYPE                                         143
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q GAIN MUTATED                                        4             11
  14Q GAIN WILD-TYPE                                     70             61
                    vv
clus                 LIFELONG NON-SMOKER
  14Q GAIN MUTATED                     1
  14Q GAIN WILD-TYPE                  13
D26V12, multiclass
                                             clus
vv                                            14Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               15
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                            11
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            14Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                143
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      70
  CURRENT SMOKER                                              61
  LIFELONG NON-SMOKER                                         13
D26V13, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q GAIN MUTATED    25   1   0   3
  14Q GAIN WILD-TYPE 228   5   4  13
D26V14, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  R0               25                228
  R1                1                  5
  R2                0                  4
  RX                3                 13

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    17  12
  15Q GAIN WILD-TYPE 171 108
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                29                279 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                108 
$`15Q GAIN MUTATED`
TCGA-18-3421 TCGA-18-4083 TCGA-21-1077 TCGA-21-1079 TCGA-22-4605 TCGA-33-4538 
       43.76         6.15        34.78        31.69        32.02        97.94 
TCGA-33-4566 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5240 
      173.79         2.63        28.96        31.23        50.24         7.73 
TCGA-39-5037 TCGA-43-3394 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2706 
        0.79        11.57         0.85        15.55         3.58        82.19 
TCGA-60-2710 TCGA-60-2711 TCGA-66-2754 TCGA-77-7140 TCGA-77-7465 TCGA-77-8150 
       55.40        29.19         2.01        20.78        15.75        54.41 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8070 TCGA-92-7341 TCGA-94-7943 
        1.25         1.97         1.41         3.48         4.70 

$`15Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       99.16        70.13        60.89        15.55       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       82.98       114.05        43.10       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76        26.99        61.61        31.50 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       32.84        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 
       27.35        36.39        15.58        35.64        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.08        13.12        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 
        0.99         0.43         0.99         1.45         1.32         0.20 
TCGA-56-7822 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 
        0.03        12.23        10.22        96.82        37.94        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       68.45        49.48         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         1.02         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        11.18        89.95         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 
       70.09       106.95         0.16        46.78         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        9.63        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 
        0.59         0.33         1.61         0.03         1.15         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        3.29         2.70         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        0.16        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.79               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            173.79             141.34 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             15.75              13.02 
[1] "0.8 - 173.8 (15.8)" "0.0 - 141.3 (13.0)"
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
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        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
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        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      7   23
  15Q GAIN WILD-TYPE   76  219
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                7                 76
  MALE                 23                219
D27V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                       2
  15Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                        0
  15Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q GAIN MUTATED                                        0
  15Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                         0
  15Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q GAIN MUTATED                                                            28
  15Q GAIN WILD-TYPE                                                         287
D27V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED     5  22   2   1
  15Q GAIN WILD-TYPE  73 174  31  17
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                5                 73
  T2               22                174
  T3                2                 31
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED    15  12   2   0
  15Q GAIN WILD-TYPE 186  79  24   5
D27V7, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               15                186
  N1               12                 79
  N2                2                 24
  N3                0                  5
                    vv
clus                  M0  M1  MX
  15Q GAIN MUTATED    28   0   2
  15Q GAIN WILD-TYPE 257   4  28
D27V8, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               28                257
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  15Q GAIN MUTATED    14  11   5   0
  15Q GAIN WILD-TYPE 151  79  57   4
D27V9, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                 14                151
  II                11                 79
  III                5                 57
  IV                 0                  4
D27V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   29
  15Q GAIN WILD-TYPE   10  285
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 10
  YES               29                285
D27V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q GAIN MUTATED                                             9
  15Q GAIN WILD-TYPE                                         149
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q GAIN MUTATED                                        6             13
  15Q GAIN WILD-TYPE                                     68             59
                    vv
clus                 LIFELONG NON-SMOKER
  15Q GAIN MUTATED                     2
  15Q GAIN WILD-TYPE                  12
D27V12, multiclass
                                             clus
vv                                            15Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     6
  CURRENT SMOKER                                            13
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            15Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                149
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      68
  CURRENT SMOKER                                              59
  LIFELONG NON-SMOKER                                         12
D27V13, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q GAIN MUTATED    23   0   0   3
  15Q GAIN WILD-TYPE 230   6   4  13
D27V14, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  R0               23                230
  R1                0                  6
  R2                0                  4
  RX                3                 13

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    10   5
  16P GAIN WILD-TYPE 178 115
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                15                293 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 5                115 
$`16P GAIN MUTATED`
TCGA-18-3412 TCGA-21-1072 TCGA-21-1081 TCGA-21-5783 TCGA-34-5240 TCGA-34-7107 
       11.34        99.16         9.30        88.08         7.73         1.08 
TCGA-37-4135 TCGA-37-5819 TCGA-56-1622 TCGA-56-6545 TCGA-66-2768 TCGA-77-7465 
        6.81         3.39        28.93         2.04         2.01        15.75 
TCGA-85-6560 TCGA-85-7843 TCGA-92-7341 
        0.36         1.15         3.48 

$`16P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
      122.43       119.80         8.78        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 
        0.39         6.54         8.09         7.46         7.82         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        8.75        27.45         0.10         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 
       25.02         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41        35.90         0.33         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.36         1.45         1.78         1.35         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         3.29         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        58.42         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78        13.58         7.33        10.13 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.36               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             99.16             173.79 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              6.81              14.07 
[1] "0.4 - 99.2 (6.8)"   "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      2   13
  16P GAIN WILD-TYPE   81  229
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                2                 81
  MALE                 13                229
D28V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                       1
  16P GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                        0
  16P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P GAIN MUTATED                                        0
  16P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                         0
  16P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P GAIN MUTATED                                                            14
  16P GAIN WILD-TYPE                                                         301
D28V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN MUTATED     0  15   0   0
  16P GAIN WILD-TYPE  78 181  33  18
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                0                 78
  T2               15                181
  T3                0                 33
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  16P GAIN MUTATED     8   6   1   0
  16P GAIN WILD-TYPE 193  85  25   5
D28V7, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0                8                193
  N1                6                 85
  N2                1                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  16P GAIN MUTATED    14   0   1
  16P GAIN WILD-TYPE 271   4  29
D28V8, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               14                271
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  16P GAIN MUTATED     6   6   3   0
  16P GAIN WILD-TYPE 159  84  59   4
D28V9, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                  6                159
  II                 6                 84
  III                3                 59
  IV                 0                  4
D28V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      0   15
  16P GAIN WILD-TYPE   11  299
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 0                 11
  YES               15                299
D28V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P GAIN MUTATED                                             5
  16P GAIN WILD-TYPE                                         153
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P GAIN MUTATED                                        5              4
  16P GAIN WILD-TYPE                                     69             68
                    vv
clus                 LIFELONG NON-SMOKER
  16P GAIN MUTATED                     1
  16P GAIN WILD-TYPE                  13
D28V12, multiclass
                                             clus
vv                                            16P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            16P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                153
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      69
  CURRENT SMOKER                                              68
  LIFELONG NON-SMOKER                                         13
D28V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16P GAIN MUTATED    13   0   0   0
  16P GAIN WILD-TYPE 240   6   4  16
D28V14, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  R0               13                240
  R1                0                  6
  R2                0                  4
  RX                0                 16

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    12   6
  16Q GAIN WILD-TYPE 176 114
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                18                290 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                114 
$`16Q GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 TCGA-21-5783 TCGA-21-5786 TCGA-34-7107 
       11.34        13.02        99.16        88.08        21.57         1.08 
TCGA-37-4133 TCGA-37-4135 TCGA-56-1622 TCGA-56-6545 TCGA-60-2708 TCGA-60-2722 
        7.82         6.81        28.93         2.04        68.45        24.10 
TCGA-60-2726 TCGA-66-2768 TCGA-77-7465 TCGA-85-6560 TCGA-85-7843 TCGA-92-7341 
       11.77         2.01        15.75         0.36         1.15         3.48 

$`16Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
        9.30       119.80         8.78        31.63        29.85        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4141 TCGA-37-5819 
        0.39         6.54         8.09         7.46         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        8.75        27.45         0.10         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       82.19        21.70        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       26.07        22.78         1.22        23.64        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        0.46         1.18         0.43         0.36         1.45         1.78 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.35         1.55         2.93         0.59         3.29         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16         4.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 
       39.88        58.42         6.18         6.90         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.36               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             99.16             173.79 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            11.555             13.825 
[1] "0.4 - 99.2 (11.6)"  "0.0 - 173.8 (13.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2   17
  16Q GAIN WILD-TYPE   81  225
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                2                 81
  MALE                 17                225
D29V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                       0
  16Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                        0
  16Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q GAIN MUTATED                                        0
  16Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                         0
  16Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q GAIN MUTATED                                                            19
  16Q GAIN WILD-TYPE                                                         296
D29V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN MUTATED     0  17   0   2
  16Q GAIN WILD-TYPE  78 179  33  16
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                0                 78
  T2               17                179
  T3                0                 33
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  16Q GAIN MUTATED    10   9   0   0
  16Q GAIN WILD-TYPE 191  82  26   5
D29V7, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               10                191
  N1                9                 82
  N2                0                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  16Q GAIN MUTATED    17   1   1
  16Q GAIN WILD-TYPE 268   3  29
D29V8, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               17                268
  M1                1                  3
  MX                1                 29
                    vv
clus                   I  II III  IV
  16Q GAIN MUTATED     7   8   3   1
  16Q GAIN WILD-TYPE 158  82  59   3
D29V9, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                  7                158
  II                 8                 82
  III                3                 59
  IV                 1                  3
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      0   19
  16Q GAIN WILD-TYPE   11  295
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 0                 11
  YES               19                295
D29V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q GAIN MUTATED                                             9
  16Q GAIN WILD-TYPE                                         149
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q GAIN MUTATED                                        5              4
  16Q GAIN WILD-TYPE                                     69             68
                    vv
clus                 LIFELONG NON-SMOKER
  16Q GAIN MUTATED                     1
  16Q GAIN WILD-TYPE                  13
D29V12, multiclass
                                             clus
vv                                            16Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            16Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                149
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      69
  CURRENT SMOKER                                              68
  LIFELONG NON-SMOKER                                         13
D29V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q GAIN MUTATED    18   0   0   0
  16Q GAIN WILD-TYPE 235   6   4  16
D29V14, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  R0               18                235
  R1                0                  6
  R2                0                  4
  RX                0                 16

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED     7   1
  17P GAIN WILD-TYPE 181 119
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 8                300 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 1                119 
$`17P GAIN MUTATED`
TCGA-21-1072 TCGA-34-2596 TCGA-56-7730 TCGA-66-2756 TCGA-66-2792 TCGA-77-7465 
       99.16         2.63         0.20         0.99        30.02        15.75 
TCGA-90-7769 TCGA-94-7943 
        0.59         4.70 

$`17P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      115.59        46.88        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76        26.99        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.03        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       40.01        22.98         4.04        22.98         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         2.93         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.20               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             99.16             173.79 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             3.665             13.350 
[1] "0.2 - 99.2 (3.7)"   "0.0 - 173.8 (13.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "2.5"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0    9
  17P GAIN WILD-TYPE   83  233
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                0                 83
  MALE                  9                233
D30V4, continuous
[1] "Remove cluster labels:" "17P GAIN MUTATED"      
clus
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 1                 53 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5783         TCGA-21-5787         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-43-2576         TCGA-52-7810 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7822         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2712         TCGA-60-2715 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-70-6722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7843         TCGA-85-7844         TCGA-92-7340 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-98-7454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                       0
  17P GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                        1
  17P GAIN WILD-TYPE                                      0
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P GAIN MUTATED                                        0
  17P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                         0
  17P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P GAIN MUTATED                                                             8
  17P GAIN WILD-TYPE                                                         307
D30V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED     1   6   1   1
  17P GAIN WILD-TYPE  77 190  32  17
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                1                 77
  T2                6                190
  T3                1                 32
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED     4   4   0   0
  17P GAIN WILD-TYPE 197  87  26   5
D30V7, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                4                197
  N1                4                 87
  N2                0                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17P GAIN MUTATED     7   0   2
  17P GAIN WILD-TYPE 278   4  28
D30V8, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0                7                278
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  17P GAIN MUTATED     2   6   1   0
  17P GAIN WILD-TYPE 163  84  61   4
D30V9, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  2                163
  II                 6                 84
  III                1                 61
  IV                 0                  4
D30V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0    9
  17P GAIN WILD-TYPE   11  305
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                 11
  YES                9                305
D30V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P GAIN MUTATED                                             2
  17P GAIN WILD-TYPE                                         156
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P GAIN MUTATED                                        4              2
  17P GAIN WILD-TYPE                                     70             70
                    vv
clus                 LIFELONG NON-SMOKER
  17P GAIN MUTATED                     1
  17P GAIN WILD-TYPE                  13
D30V12, multiclass
                                             clus
vv                                            17P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            17P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                156
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      70
  CURRENT SMOKER                                              70
  LIFELONG NON-SMOKER                                         13
D30V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17P GAIN MUTATED     6   0   0   1
  17P GAIN WILD-TYPE 247   6   4  15
D30V14, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  R0                6                247
  R1                0                  6
  R2                0                  4
  RX                1                 15

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    22  12
  17Q GAIN WILD-TYPE 166 108
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                34                274 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                12                108 
$`17Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 TCGA-22-4599 TCGA-22-4604 
        4.80        46.88        70.13        34.78        38.17        13.12 
TCGA-22-4613 TCGA-22-5471 TCGA-33-4532 TCGA-33-4582 TCGA-34-2596 TCGA-34-5231 
       11.77        31.69        82.98       103.53         2.63        50.24 
TCGA-34-5240 TCGA-37-3792 TCGA-37-4133 TCGA-39-5016 TCGA-39-5019 TCGA-39-5037 
        7.73         0.39         7.82        74.07        44.71         0.79 
TCGA-46-6025 TCGA-46-6026 TCGA-56-1622 TCGA-56-7730 TCGA-66-2742 TCGA-66-2756 
        0.95         0.59        28.93         0.20        21.07         0.99 
TCGA-66-2758 TCGA-66-2787 TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 TCGA-77-6845 
       20.98        40.01        30.02        10.06         2.73        23.28 
TCGA-77-7138 TCGA-77-7465 TCGA-85-6560 TCGA-90-7769 
       11.18        15.75         0.36         0.59 

$`17Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       99.16        60.89        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       48.33        24.13         0.56        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
        9.53        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      173.79       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 
        5.52         4.96         1.08         3.95         0.43         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         6.81         0.39         3.39        47.80 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
        1.94        27.35        36.39        15.58        35.64        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57        18.84         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        0.43         0.99         1.45         1.32         0.85         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10         2.01         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        25.97        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 
        5.03        54.08         4.01        49.05         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 
        8.02         3.12        29.56        73.08        75.09        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       46.78         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.33         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.03         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        1.45         1.78         1.35         1.55         2.93         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.20               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            103.53             173.79 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            14.435             13.070 
[1] "0.2 - 103.5 (14.4)" "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      4   31
  17Q GAIN WILD-TYPE   79  211
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                4                 79
  MALE                 31                211
D31V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                       2
  17Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                        0
  17Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q GAIN MUTATED                                        0
  17Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                         0
  17Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q GAIN MUTATED                                                            33
  17Q GAIN WILD-TYPE                                                         282
D31V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN MUTATED     6  24   2   3
  17Q GAIN WILD-TYPE  72 172  31  15
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                6                 72
  T2               24                172
  T3                2                 31
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  17Q GAIN MUTATED    18  17   0   0
  17Q GAIN WILD-TYPE 183  74  26   5
D31V7, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               18                183
  N1               17                 74
  N2                0                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17Q GAIN MUTATED    33   1   1
  17Q GAIN WILD-TYPE 252   3  29
D31V8, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               33                252
  M1                1                  3
  MX                1                 29
                    vv
clus                   I  II III  IV
  17Q GAIN MUTATED    13  16   5   1
  17Q GAIN WILD-TYPE 152  74  57   3
D31V9, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                 13                152
  II                16                 74
  III                5                 57
  IV                 1                  3
D31V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      2   33
  17Q GAIN WILD-TYPE    9  281
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 2                  9
  YES               33                281
D31V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q GAIN MUTATED                                            14
  17Q GAIN WILD-TYPE                                         144
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q GAIN MUTATED                                        9             10
  17Q GAIN WILD-TYPE                                     65             62
                    vv
clus                 LIFELONG NON-SMOKER
  17Q GAIN MUTATED                     2
  17Q GAIN WILD-TYPE                  12
D31V12, multiclass
                                             clus
vv                                            17Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               14
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                            10
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            17Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                144
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      65
  CURRENT SMOKER                                              62
  LIFELONG NON-SMOKER                                         12
D31V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q GAIN MUTATED    28   0   2   0
  17Q GAIN WILD-TYPE 225   6   2  16
D31V14, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  R0               28                225
  R1                0                  6
  R2                2                  2
  RX                0                 16

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    32  20
  18P GAIN WILD-TYPE 156 100
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                52                256 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                20                100 
$`18P GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-18-4083 TCGA-21-1075 TCGA-21-1079 
       46.52        11.34        28.34         6.15        70.13        31.69 
TCGA-21-5783 TCGA-21-5786 TCGA-22-0944 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 
       88.08        21.57         7.33        24.13        13.12        11.77 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 TCGA-33-4586 TCGA-34-2596 TCGA-34-5231 
       56.32        82.98       173.79        14.07         2.63        50.24 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-39-5021 TCGA-39-5027 TCGA-39-5031 
        9.04        10.82         7.73        68.58        60.76        27.35 
TCGA-43-2576 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 TCGA-56-7730 
       18.28         8.48        18.05         7.00        66.51         0.20 
TCGA-60-2698 TCGA-60-2711 TCGA-60-2722 TCGA-60-2723 TCGA-66-2758 TCGA-66-2759 
       10.22        29.19        24.10        22.78        20.98        25.02 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2783 TCGA-66-2787 TCGA-66-2794 TCGA-68-7755 
        2.01        23.01        24.95        40.01        54.08         2.73 
TCGA-77-6845 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8143 
       23.28        70.09        46.78        15.75        37.81        26.40 
TCGA-77-8156 TCGA-85-8049 TCGA-85-8071 TCGA-90-7769 
        0.33         1.97         0.46         0.59 

$`18P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 
       12.16         4.47        81.07        79.46         4.80        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       59.51        24.92         1.61        43.76         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 
        3.02        27.16       115.59        46.88        99.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       34.78        15.55       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       31.63        29.85        10.82        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 
       35.08        48.33         0.56        38.17        34.75        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30         9.53        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 
       18.84        30.08        62.86        16.60       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       103.53       141.34        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       51.78        32.68        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       74.07        44.71        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-6647 TCGA-43-6770 
       18.08        13.12        11.57        18.84         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97         1.58         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.85        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        1.45         1.32         0.85         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       12.23        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        55.40         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 
       38.83        30.61         3.16        26.07         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 
        1.02         2.01         0.92         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         2.01         7.07        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 
        2.01        19.00        12.03         3.98        12.00         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       25.97        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       10.06         4.01        49.05         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 
        3.12        29.56        73.08        75.09        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 
       20.78         0.49        42.25       106.95         0.16         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       86.76        53.95        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       17.69       104.09        11.54        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41        35.90         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.85         0.53         1.41         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        1.45         1.78         1.35         1.55         2.93         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.20               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            173.79             141.34 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            22.895             11.755 
[1] "0.2 - 173.8 (22.9)" "0.0 - 141.3 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     10   44
  18P GAIN WILD-TYPE   73  198
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               10                 73
  MALE                 44                198
D32V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                       2
  18P GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                        0
  18P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P GAIN MUTATED                                        0
  18P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                         0
  18P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P GAIN MUTATED                                                            52
  18P GAIN WILD-TYPE                                                         263
D32V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P GAIN MUTATED     8  38   5   3
  18P GAIN WILD-TYPE  70 158  28  15
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                8                 70
  T2               38                158
  T3                5                 28
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  18P GAIN MUTATED    29  14   9   2
  18P GAIN WILD-TYPE 172  77  17   3
D32V7, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               29                172
  N1               14                 77
  N2                9                 17
  N3                2                  3
                    vv
clus                  M0  M1  MX
  18P GAIN MUTATED    52   0   1
  18P GAIN WILD-TYPE 233   4  29
D32V8, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               52                233
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  18P GAIN MUTATED    23  16  15   0
  18P GAIN WILD-TYPE 142  74  47   4
D32V9, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                 23                142
  II                16                 74
  III               15                 47
  IV                 0                  4
D32V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      2   52
  18P GAIN WILD-TYPE    9  262
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 2                  9
  YES               52                262
D32V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P GAIN MUTATED                                            19
  18P GAIN WILD-TYPE                                         139
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P GAIN MUTATED                                       14             16
  18P GAIN WILD-TYPE                                     60             56
                    vv
clus                 LIFELONG NON-SMOKER
  18P GAIN MUTATED                     3
  18P GAIN WILD-TYPE                  11
D32V12, multiclass
                                             clus
vv                                            18P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    14
  CURRENT SMOKER                                            16
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            18P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                139
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      60
  CURRENT SMOKER                                              56
  LIFELONG NON-SMOKER                                         11
D32V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18P GAIN MUTATED    39   0   1   3
  18P GAIN WILD-TYPE 214   6   3  13
D32V14, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  R0               39                214
  R1                0                  6
  R2                1                  3
  RX                3                 13

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    23  15
  18Q GAIN WILD-TYPE 165 105
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                38                270 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                15                105 
$`18Q GAIN MUTATED`
TCGA-18-4083 TCGA-21-1075 TCGA-21-5783 TCGA-22-1012 TCGA-22-4595 TCGA-22-4604 
        6.15        70.13        88.08        14.10        24.13        13.12 
TCGA-22-4613 TCGA-22-5481 TCGA-22-5491 TCGA-33-4532 TCGA-33-4586 TCGA-34-2596 
       11.77        79.20        56.32        82.98        14.07         2.63 
TCGA-34-5236 TCGA-34-5239 TCGA-39-5021 TCGA-39-5031 TCGA-43-2576 TCGA-43-3920 
        9.04        10.82        68.58        27.35        18.28        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-7658 TCGA-43-8115 TCGA-56-7730 TCGA-60-2695 
        8.48         7.00        66.51         6.64         0.20        15.55 
TCGA-60-2711 TCGA-60-2722 TCGA-60-2723 TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 
       29.19        24.10        22.78        20.98        25.02        23.01 
TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-68-7755 TCGA-77-7463 TCGA-77-7465 
       40.01        10.06        54.08         2.73        46.78        15.75 
TCGA-77-8143 TCGA-77-8156 
       26.40         0.33 

$`18Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
      122.43         9.30       119.80         8.78        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       48.33         0.56        38.17        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
        9.53        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
        0.79        54.28        71.34        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        74.07        44.71        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5670 
        0.79        17.88        18.08        13.12        11.57        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2696 
        0.99         1.45         1.32         0.85         0.03         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       68.45        49.48        55.40         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       35.34        38.83        30.61         3.16        26.07         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 
       22.98         5.03        30.02         4.01        49.05         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
       70.09       106.95         0.16         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       35.90         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.36         1.45         1.78         1.35         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        0.59         3.29         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16         4.70        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.20               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             88.08             173.79 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            19.910             11.885 
[1] "0.2 - 88.1 (19.9)"  "0.0 - 173.8 (11.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     11   28
  18Q GAIN WILD-TYPE   72  214
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE               11                 72
  MALE                 28                214
D33V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                       2
  18Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                        0
  18Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q GAIN MUTATED                                        0
  18Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                         0
  18Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q GAIN MUTATED                                                            37
  18Q GAIN WILD-TYPE                                                         278
D33V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED     7  27   2   3
  18Q GAIN WILD-TYPE  71 169  31  15
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                7                 71
  T2               27                169
  T3                2                 31
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED    22  11   6   0
  18Q GAIN WILD-TYPE 179  80  20   5
D33V7, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0               22                179
  N1               11                 80
  N2                6                 20
  N3                0                  5
                    vv
clus                  M0  M1  MX
  18Q GAIN MUTATED    37   0   1
  18Q GAIN WILD-TYPE 248   4  29
D33V8, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0               37                248
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  18Q GAIN MUTATED    19  12   8   0
  18Q GAIN WILD-TYPE 146  78  54   4
D33V9, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                 19                146
  II                12                 78
  III                8                 54
  IV                 0                  4
D33V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   37
  18Q GAIN WILD-TYPE    9  277
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 2                  9
  YES               37                277
D33V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q GAIN MUTATED                                            19
  18Q GAIN WILD-TYPE                                         139
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q GAIN MUTATED                                        9              9
  18Q GAIN WILD-TYPE                                     65             63
                    vv
clus                 LIFELONG NON-SMOKER
  18Q GAIN MUTATED                     0
  18Q GAIN WILD-TYPE                  14
D33V12, multiclass
                                             clus
vv                                            18Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            18Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                139
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      65
  CURRENT SMOKER                                              63
  LIFELONG NON-SMOKER                                         14
D33V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q GAIN MUTATED    31   0   0   1
  18Q GAIN WILD-TYPE 222   6   4  15
D33V14, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  R0               31                222
  R1                0                  6
  R2                0                  4
  RX                1                 15

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    19  13
  19P GAIN WILD-TYPE 169 107
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                32                276 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                13                107 
$`19P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-22-4595 TCGA-22-5474 TCGA-22-5483 
        4.47         4.80        46.52        24.13        14.60        18.84 
TCGA-22-5489 TCGA-33-4566 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 
       62.86       173.79        14.07         2.63        61.61        50.24 
TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5034 TCGA-39-5035 TCGA-43-6143 
        7.73         1.08        74.07        36.39        15.58         7.00 
TCGA-52-7809 TCGA-60-2695 TCGA-60-2708 TCGA-66-2777 TCGA-66-2794 TCGA-77-6843 
        5.85        15.55        68.45         2.01        54.08        73.08 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7465 TCGA-77-8009 TCGA-77-8148 TCGA-85-6798 
       89.95         0.49        15.75        53.95         9.63         1.12 
TCGA-85-7950 TCGA-90-7769 
        1.97         0.59 

$`19P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       35.08        48.33         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
       97.94        43.10       103.53       141.34        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       19.76        26.99        31.50        28.96        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        5.52         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33         1.94        27.35        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        0.95         0.59         0.39         0.39         2.07        17.79 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.85         0.20         0.03         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        82.19        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        2.01         7.07        23.01        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       10.06         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        8.02         3.12        29.56        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       20.78        42.25        70.09       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
        6.51        86.76        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        6.97        54.41        35.90         0.33         0.36         0.79 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         3.29         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16         4.70        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.49               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            173.79             141.34 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            15.565             12.410 
[1] "0.5 - 173.8 (15.6)" "0.0 - 141.3 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      7   26
  19P GAIN WILD-TYPE   76  216
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                7                 76
  MALE                 26                216
D34V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                       5
  19P GAIN WILD-TYPE                                     2
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                        0
  19P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P GAIN MUTATED                                        0
  19P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                         0
  19P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P GAIN MUTATED                                                            28
  19P GAIN WILD-TYPE                                                         287
D34V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED     6  21   5   1
  19P GAIN WILD-TYPE  72 175  28  17
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                6                 72
  T2               21                175
  T3                5                 28
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED    17  12   4   0
  19P GAIN WILD-TYPE 184  79  22   5
D34V7, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               17                184
  N1               12                 79
  N2                4                 22
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P GAIN MUTATED    31   0   1
  19P GAIN WILD-TYPE 254   4  29
D34V8, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0               31                254
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  19P GAIN MUTATED    14  12   7   0
  19P GAIN WILD-TYPE 151  78  55   4
D34V9, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                 14                151
  II                12                 78
  III                7                 55
  IV                 0                  4
D34V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      2   31
  19P GAIN WILD-TYPE    9  283
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 2                  9
  YES               31                283
D34V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P GAIN MUTATED                                            18
  19P GAIN WILD-TYPE                                         140
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P GAIN MUTATED                                        5              9
  19P GAIN WILD-TYPE                                     69             63
                    vv
clus                 LIFELONG NON-SMOKER
  19P GAIN MUTATED                     1
  19P GAIN WILD-TYPE                  13
D34V12, multiclass
                                             clus
vv                                            19P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               18
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            19P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                140
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      69
  CURRENT SMOKER                                              63
  LIFELONG NON-SMOKER                                         13
D34V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19P GAIN MUTATED    26   0   0   2
  19P GAIN WILD-TYPE 227   6   4  14
D34V14, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  R0               26                227
  R1                0                  6
  R2                0                  4
  RX                2                 14

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    26  18
  19Q GAIN WILD-TYPE 162 102
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                44                264 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                18                102 
$`19Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3411 TCGA-18-3417 TCGA-21-1081 TCGA-21-5787 TCGA-22-4595 
        4.80        46.52        24.92         9.30        10.82        24.13 
TCGA-22-4599 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-33-4566 TCGA-33-4586 
       38.17        18.84        30.08        62.86       173.79        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5240 TCGA-34-5928 
       19.76         2.63        61.61        50.24         7.73         5.52 
TCGA-34-7107 TCGA-37-5819 TCGA-39-5016 TCGA-39-5034 TCGA-39-5035 TCGA-43-3920 
        1.08         3.39        74.07        36.39        15.58        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-52-7809 TCGA-56-6546 TCGA-60-2695 
        8.48        18.05         7.00         5.85         1.02        15.55 
TCGA-60-2708 TCGA-60-2723 TCGA-66-2742 TCGA-66-2777 TCGA-77-6843 TCGA-77-7141 
       68.45        22.78        21.07         2.01        73.08         0.49 
TCGA-77-7335 TCGA-77-7465 TCGA-77-8009 TCGA-77-8130 TCGA-77-8138 TCGA-77-8148 
       70.09        15.75        53.95        82.92        17.69         9.63 
TCGA-85-7699 TCGA-90-7769 
        0.03         0.59 

$`19Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        79.46        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5491 
        0.79        54.28        71.34        79.20        11.74        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 
      141.34        54.44        10.98        26.99        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        31.23        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       14.07        22.95         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33         1.94        27.35        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-6647 
       17.88        18.28        18.08        13.12        11.57         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       28.93         0.10         2.04         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 
        1.45         1.32         0.85         0.20         0.03         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        2.01         7.07        23.01        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02         3.12        29.56        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 
       11.18        89.95        20.78        42.25       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 
       46.78         6.51        86.76        37.81        12.59        53.92 
TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       39.09       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         1.61         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         3.29         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16         4.70        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            173.79             141.34 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            17.870             12.095 
[1] "0.0 - 173.8 (17.9)" "0.0 - 141.3 (12.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     12   34
  19Q GAIN WILD-TYPE   71  208
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               12                 71
  MALE                 34                208
D35V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                       5
  19Q GAIN WILD-TYPE                                     2
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                        0
  19Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q GAIN MUTATED                                        0
  19Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                         0
  19Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q GAIN MUTATED                                                            41
  19Q GAIN WILD-TYPE                                                         274
D35V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED     9  31   4   2
  19Q GAIN WILD-TYPE  69 165  29  16
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                9                 69
  T2               31                165
  T3                4                 29
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  19Q GAIN MUTATED    23  16   7   0
  19Q GAIN WILD-TYPE 178  75  19   5
D35V7, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               23                178
  N1               16                 75
  N2                7                 19
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q GAIN MUTATED    41   2   2
  19Q GAIN WILD-TYPE 244   2  28
D35V8, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0               41                244
  M1                2                  2
  MX                2                 28
                    vv
clus                   I  II III  IV
  19Q GAIN MUTATED    17  16  10   2
  19Q GAIN WILD-TYPE 148  74  52   2
D35V9, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                 17                148
  II                16                 74
  III               10                 52
  IV                 2                  2
D35V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      2   44
  19Q GAIN WILD-TYPE    9  270
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 2                  9
  YES               44                270
D35V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q GAIN MUTATED                                            24
  19Q GAIN WILD-TYPE                                         134
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q GAIN MUTATED                                       12              9
  19Q GAIN WILD-TYPE                                     62             63
                    vv
clus                 LIFELONG NON-SMOKER
  19Q GAIN MUTATED                     1
  19Q GAIN WILD-TYPE                  13
D35V12, multiclass
                                             clus
vv                                            19Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               24
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            19Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                134
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      62
  CURRENT SMOKER                                              63
  LIFELONG NON-SMOKER                                         13
D35V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q GAIN MUTATED    35   0   0   1
  19Q GAIN WILD-TYPE 218   6   4  15
D35V14, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  R0               35                218
  R1                0                  6
  R2                0                  4
  RX                1                 15

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    49  39
  20P GAIN WILD-TYPE 139  81
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                88                220 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                39                 81 
$`20P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-21-1080 TCGA-21-1081 
       79.46         4.80        13.02        24.92       122.43         9.30 
TCGA-21-1082 TCGA-21-5783 TCGA-21-5786 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
      119.80        88.08        21.57        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-5477 TCGA-22-5482 
       24.13        13.12        32.02         9.53        44.22        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4587 
       18.84        30.08        56.32        82.98        97.94        54.44 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 
       26.99         2.63        61.61        50.24        10.82         7.73 
TCGA-34-7107 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5029 TCGA-39-5036 
        1.08         3.39        74.07        68.58        24.33        35.64 
TCGA-39-5037 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 
        0.79        18.08        18.84        18.05         7.00        66.51 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 
        9.96         0.59         0.39         2.07        28.93         2.04 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.32         0.85         0.20         0.03 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 
       96.82        37.94        68.45        24.10        22.78        11.77 
TCGA-66-2742 TCGA-66-2756 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2780 
       21.07         0.99         7.07        23.01         3.02        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2787 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 
        3.98        24.95        40.01        30.02        10.06        49.05 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       29.56        75.09        23.28        11.18        89.95        20.78 
TCGA-77-8143 TCGA-85-7698 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
       26.40         1.61         1.41         0.43         0.36         1.45 
TCGA-90-7769 TCGA-92-7341 TCGA-98-8021 TCGA-98-8022 
        0.59         3.48        13.58         7.33 

$`20P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1083 TCGA-21-5782 
       60.89        34.78        15.55        31.69         8.78        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 
       64.21         1.74        14.10        48.82        35.08         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60         0.79        54.28        71.34        79.20 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       62.86        16.60       114.05        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2604 TCGA-34-2605 
      141.34        14.07        10.98        19.76        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 
       32.84        31.23        51.78        32.68         9.04        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       22.95         5.52         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 TCGA-43-2576 
        1.94        27.35        36.39        15.58        17.88        18.28 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       13.12        11.57         8.48         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 
        3.78         6.97         1.58         6.64         6.35         0.95 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        17.79         5.85        30.31         8.75        27.45 
TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 TCGA-60-2695 TCGA-60-2696 
        0.10         1.02         0.99         1.45        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       12.23        10.22        82.19        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       30.61         3.16        26.07         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10         2.01         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 
        2.01         2.01        19.00         2.01        19.00        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.94        25.97        22.98         4.04        22.98         5.03 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       54.08         4.01         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6843 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
        3.12        73.08         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 TCGA-90-6837 
        1.97         0.53         0.46         1.18         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 
        1.55         2.93         3.29         2.70         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16         4.70        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8023 
        6.18         6.90         3.78        10.13 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.03               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            122.43             173.79 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            18.840             11.885 
[1] "0.0 - 122.4 (18.8)" "0.0 - 173.8 (11.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     15   76
  20P GAIN WILD-TYPE   68  166
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               15                 68
  MALE                 76                166
D36V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                       4
  20P GAIN WILD-TYPE                                     3
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                        0
  20P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P GAIN MUTATED                                        0
  20P GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                         1
  20P GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P GAIN MUTATED                                                            86
  20P GAIN WILD-TYPE                                                         229
D36V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P GAIN MUTATED    21  55   9   6
  20P GAIN WILD-TYPE  57 141  24  12
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               21                 57
  T2               55                141
  T3                9                 24
  T4                6                 12
                    vv
clus                  N0  N1  N2  N3
  20P GAIN MUTATED    52  30   8   1
  20P GAIN WILD-TYPE 149  61  18   4
D36V7, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               52                149
  N1               30                 61
  N2                8                 18
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20P GAIN MUTATED    80   3   5
  20P GAIN WILD-TYPE 205   1  25
D36V8, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               80                205
  M1                3                  1
  MX                5                 25
                    vv
clus                   I  II III  IV
  20P GAIN MUTATED    41  26  19   3
  20P GAIN WILD-TYPE 124  64  43   1
D36V9, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                 41                124
  II                26                 64
  III               19                 43
  IV                 3                  1
D36V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      5   86
  20P GAIN WILD-TYPE    6  228
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 5                  6
  YES               86                228
D36V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P GAIN MUTATED                                            42
  20P GAIN WILD-TYPE                                         116
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P GAIN MUTATED                                       24             20
  20P GAIN WILD-TYPE                                     50             52
                    vv
clus                 LIFELONG NON-SMOKER
  20P GAIN MUTATED                     3
  20P GAIN WILD-TYPE                  11
D36V12, multiclass
                                             clus
vv                                            20P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               42
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    24
  CURRENT SMOKER                                            20
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            20P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                116
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      50
  CURRENT SMOKER                                              52
  LIFELONG NON-SMOKER                                         11
D36V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20P GAIN MUTATED    76   1   2   2
  20P GAIN WILD-TYPE 177   5   2  14
D36V14, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  R0               76                177
  R1                1                  5
  R2                2                  2
  RX                2                 14

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    49  30
  20Q GAIN WILD-TYPE 139  90
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                79                229 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                30                 90 
$`20Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-21-1079 TCGA-21-1081 
       79.46         4.80        13.02        24.92        31.69         9.30 
TCGA-21-1082 TCGA-21-5786 TCGA-21-5787 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
      119.80        21.57        10.82        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4605 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 
       35.08        24.13        32.02        30.08        56.32        82.98 
TCGA-33-4538 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-5231 TCGA-34-5240 
       97.94        54.44        26.99         2.63        50.24         7.73 
TCGA-37-3792 TCGA-37-4130 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 TCGA-39-5029 
        0.39         8.09         3.39        47.80        68.58        24.33 
TCGA-39-5036 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-7656 TCGA-43-7658 
       35.64        18.08        18.84        18.05         6.97        66.51 
TCGA-46-3768 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-6545 
        9.96         0.59         5.85        30.31        28.93         2.04 
TCGA-56-6546 TCGA-56-7223 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 TCGA-60-2703 
        1.02         0.99         0.85         0.03        15.55        96.82 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 
       82.19        68.45        29.19        24.10        11.77        21.07 
TCGA-66-2744 TCGA-66-2756 TCGA-66-2757 TCGA-66-2769 TCGA-66-2770 TCGA-66-2781 
        0.99         0.99         0.99         7.07        23.01         3.98 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2793 TCGA-68-8250 TCGA-77-6845 TCGA-77-7138 
        1.94        40.01        10.06         8.02        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7337 TCGA-77-7465 TCGA-77-8143 TCGA-77-8145 
       89.95        20.78       106.95        15.75        26.40         6.97 
TCGA-85-6560 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-90-7769 
        0.36         1.41         0.43         0.36         1.45         0.59 
TCGA-92-7341 
        3.48 

$`20Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 
       60.89        34.78        15.55       122.43         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       88.08        29.85        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       64.21         1.74        48.82        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        13.12        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 
       71.34        79.20        11.74        18.84        62.86        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       10.98        19.76        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       31.23        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        6.54         7.46         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       44.71        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       27.35        36.39        15.58         0.79        17.88        18.28 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       13.12        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 
        5.42         3.78         1.58         6.64         6.35         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 
        0.39         0.39         2.07        17.79         8.75        27.45 
TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 
        0.10         0.99         0.43         1.45         1.32         0.20 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 
        3.58        12.23        10.22        37.94        21.70        49.48 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       55.40         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10         2.01         1.02         2.01         0.92 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       12.00        24.95        25.97        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        30.02        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.64         6.94         3.12        29.56        73.08        75.09 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 
        0.49        42.25        70.09         0.16        46.78         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8148 
       39.09        17.69       104.09        11.54        27.39         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41        35.90         0.33         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 
        0.85         1.97         0.53         0.46         1.18         1.78 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 
        1.35         1.55         2.93         3.29         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.03               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            119.80             173.79 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             18.05              12.16 
[1] "0.0 - 119.8 (18.1)" "0.0 - 173.8 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     15   65
  20Q GAIN WILD-TYPE   68  177
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               15                 68
  MALE                 65                177
D37V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                       4
  20Q GAIN WILD-TYPE                                     3
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                        0
  20Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q GAIN MUTATED                                        0
  20Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                         1
  20Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q GAIN MUTATED                                                            75
  20Q GAIN WILD-TYPE                                                         240
D37V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q GAIN MUTATED    18  49   8   5
  20Q GAIN WILD-TYPE  60 147  25  13
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               18                 60
  T2               49                147
  T3                8                 25
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  20Q GAIN MUTATED    47  25   8   0
  20Q GAIN WILD-TYPE 154  66  18   5
D37V7, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               47                154
  N1               25                 66
  N2                8                 18
  N3                0                  5
                    vv
clus                  M0  M1  MX
  20Q GAIN MUTATED    68   3   8
  20Q GAIN WILD-TYPE 217   1  22
D37V8, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               68                217
  M1                3                  1
  MX                8                 22
                    vv
clus                   I  II III  IV
  20Q GAIN MUTATED    37  21  17   3
  20Q GAIN WILD-TYPE 128  69  45   1
D37V9, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                 37                128
  II                21                 69
  III               17                 45
  IV                 3                  1
D37V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      5   75
  20Q GAIN WILD-TYPE    6  239
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 5                  6
  YES               75                239
D37V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q GAIN MUTATED                                            37
  20Q GAIN WILD-TYPE                                         121
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q GAIN MUTATED                                       22             16
  20Q GAIN WILD-TYPE                                     52             56
                    vv
clus                 LIFELONG NON-SMOKER
  20Q GAIN MUTATED                     4
  20Q GAIN WILD-TYPE                  10
D37V12, multiclass
                                             clus
vv                                            20Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               37
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    22
  CURRENT SMOKER                                            16
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            20Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                121
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              56
  LIFELONG NON-SMOKER                                         10
D37V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q GAIN MUTATED    65   2   1   1
  20Q GAIN WILD-TYPE 188   4   3  15
D37V14, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  R0               65                188
  R1                2                  4
  R2                1                  3
  RX                1                 15

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    11   6
  21Q GAIN WILD-TYPE 177 114
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                17                291 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 6                114 
$`21Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1081 TCGA-22-4595 TCGA-33-4583 TCGA-33-4587 TCGA-34-2605 
        4.80         9.30        24.13       141.34        54.44        28.96 
TCGA-34-5240 TCGA-43-6143 TCGA-56-7221 TCGA-60-2706 TCGA-60-2714 TCGA-66-2756 
        7.73         7.00         0.99        82.19        16.83         0.99 
TCGA-66-2783 TCGA-77-8130 TCGA-77-8139 TCGA-77-8143 TCGA-92-7340 
       24.95        82.92       104.09        26.40         2.70 

$`21Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        48.33         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      173.79       103.53        14.07        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        61.61        31.50        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.08        13.12        11.57        18.84         8.48        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.03        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        47.87        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 
       12.59        53.92        39.09        17.69        11.54        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        1.78         1.35         1.55         2.93         0.59         3.29 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.99               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            141.34             173.79 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             24.13              13.02 
[1] "1.0 - 141.3 (24.1)" "0.0 - 173.8 (13.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
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        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      4   14
  21Q GAIN WILD-TYPE   79  228
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                4                 79
  MALE                 14                228
D38V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                       2
  21Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                        0
  21Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q GAIN MUTATED                                        0
  21Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                         1
  21Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q GAIN MUTATED                                                            15
  21Q GAIN WILD-TYPE                                                         300
D38V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     2  11   3   2
  21Q GAIN WILD-TYPE  76 185  30  16
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                2                 76
  T2               11                185
  T3                3                 30
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  21Q GAIN MUTATED     9   6   2   1
  21Q GAIN WILD-TYPE 192  85  24   4
D38V7, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                9                192
  N1                6                 85
  N2                2                 24
  N3                1                  4
                    vv
clus                  M0  M1  MX
  21Q GAIN MUTATED    14   0   2
  21Q GAIN WILD-TYPE 271   4  28
D38V8, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               14                271
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  21Q GAIN MUTATED     5   6   6   0
  21Q GAIN WILD-TYPE 160  84  56   4
D38V9, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                  5                160
  II                 6                 84
  III                6                 56
  IV                 0                  4
D38V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1   17
  21Q GAIN WILD-TYPE   10  297
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 1                 10
  YES               17                297
D38V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q GAIN MUTATED                                            12
  21Q GAIN WILD-TYPE                                         146
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q GAIN MUTATED                                        2              4
  21Q GAIN WILD-TYPE                                     72             68
                    vv
clus                 LIFELONG NON-SMOKER
  21Q GAIN MUTATED                     0
  21Q GAIN WILD-TYPE                  14
D38V12, multiclass
                                             clus
vv                                            21Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            21Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                146
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      72
  CURRENT SMOKER                                              68
  LIFELONG NON-SMOKER                                         14
D38V13, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q GAIN MUTATED    12   1   1   1
  21Q GAIN WILD-TYPE 241   5   3  15
D38V14, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  R0               12                241
  R1                1                  5
  R2                1                  3
  RX                1                 15

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    48  26
  22Q GAIN WILD-TYPE 140  94
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                74                234 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                26                 94 
$`22Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 
       81.07        79.46        46.52        11.34        13.02        99.16 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-22-4591 TCGA-22-4593 
       70.13        34.78        31.69       119.80        20.45        35.08 
TCGA-22-4595 TCGA-22-4605 TCGA-22-5477 TCGA-22-5481 TCGA-22-5491 TCGA-33-4532 
       24.13        32.02        44.22        79.20        56.32        82.98 
TCGA-33-4586 TCGA-34-2605 TCGA-34-5231 TCGA-34-5240 TCGA-39-5034 TCGA-39-5037 
       14.07        28.96        50.24         7.73        36.39         0.79 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6770 TCGA-43-7657 TCGA-52-7810 
       11.57        18.84        18.05         2.79         1.58        30.31 
TCGA-56-1622 TCGA-56-5897 TCGA-56-7221 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
       28.93         0.10         0.99         1.32         0.85         0.20 
TCGA-56-7822 TCGA-60-2703 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2722 
        0.03        96.82        68.45        29.19        16.83        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2758 TCGA-66-2763 TCGA-66-2777 
       22.78        23.64        11.77        20.98         0.99         2.01 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 
        3.98        24.95         1.94        30.02        54.08        49.05 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7463 TCGA-77-7465 
       29.56        23.28        89.95        20.78        46.78        15.75 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 
       37.81        82.92        53.92        11.54        26.40         6.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-90-7769 TCGA-92-7341 TCGA-94-7033 
        0.53         1.41         0.43         0.59         3.48         2.86 
TCGA-96-7545 TCGA-96-8170 
       58.42         6.90 

$`22Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       12.16         4.47         4.80        59.51        28.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.61        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 
       27.16       115.59        46.88        60.89        15.55       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.30         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 
        1.74        14.10        27.02        48.82        48.33         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        34.75        13.12        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       31.69        64.90        63.52        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
       71.34        11.74        18.84        30.08        62.86        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       31.50        32.84        31.23        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       10.82        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.28        18.08        13.12         8.48         7.00         6.02 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 
       17.79         5.85         8.75        27.45         2.04         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.43         0.99         1.45        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       10.22        37.94        82.19        21.70        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        47.87        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.07         1.22        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       23.01        19.00         3.02        19.00        12.03        12.00 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       10.06         4.01         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 
        3.12        73.08        75.09        11.18         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
       70.09       106.95         0.16         6.51        86.76        53.95 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
       12.59        39.09        17.69       104.09        27.39         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 
        1.97         0.85         1.97         0.46         1.18         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        1.45         1.78         1.35         1.55         2.93         3.29 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 
        2.70         4.01         5.26         2.27         0.16         4.70 
TCGA-96-7544 TCGA-96-8169 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88         6.18         3.78        13.58         7.33        10.13 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.03               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            119.80             173.79 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             23.46              10.90 
[1] "0.0 - 119.8 (23.5)" "0.0 - 173.8 (10.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
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        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     17   60
  22Q GAIN WILD-TYPE   66  182
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               17                 66
  MALE                 60                182
D39V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                       2
  22Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                        0
  22Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q GAIN MUTATED                                        0
  22Q GAIN WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                         0
  22Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q GAIN MUTATED                                                            75
  22Q GAIN WILD-TYPE                                                         240
D39V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q GAIN MUTATED    12  53   7   5
  22Q GAIN WILD-TYPE  66 143  26  13
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1               12                 66
  T2               53                143
  T3                7                 26
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED    43  26   7   1
  22Q GAIN WILD-TYPE 158  65  19   4
D39V7, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0               43                158
  N1               26                 65
  N2                7                 19
  N3                1                  4
                    vv
clus                  M0  M1  MX
  22Q GAIN MUTATED    67   1   7
  22Q GAIN WILD-TYPE 218   3  23
D39V8, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               67                218
  M1                1                  3
  MX                7                 23
                    vv
clus                   I  II III  IV
  22Q GAIN MUTATED    32  29  13   1
  22Q GAIN WILD-TYPE 133  61  49   3
D39V9, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                 32                133
  II                29                 61
  III               13                 49
  IV                 1                  3
D39V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      3   74
  22Q GAIN WILD-TYPE    8  240
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 3                  8
  YES               74                240
D39V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q GAIN MUTATED                                            40
  22Q GAIN WILD-TYPE                                         118
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q GAIN MUTATED                                       13             21
  22Q GAIN WILD-TYPE                                     61             51
                    vv
clus                 LIFELONG NON-SMOKER
  22Q GAIN MUTATED                     2
  22Q GAIN WILD-TYPE                  12
D39V12, multiclass
                                             clus
vv                                            22Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               40
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    13
  CURRENT SMOKER                                            21
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            22Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                118
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      61
  CURRENT SMOKER                                              51
  LIFELONG NON-SMOKER                                         12
D39V13, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q GAIN MUTATED    61   1   1   1
  22Q GAIN WILD-TYPE 192   5   3  15
D39V14, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  R0               61                192
  R1                1                  5
  R2                1                  3
  RX                1                 15

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     6   3
  XQ GAIN WILD-TYPE 182 117
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9               299 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3               117 
$`XQ GAIN MUTATED`
TCGA-18-3406 TCGA-22-4593 TCGA-22-5483 TCGA-43-5670 TCGA-60-2711 TCGA-60-2719 
       12.16        35.08        18.84        18.05        29.19        30.61 
TCGA-66-2756 TCGA-77-7465 TCGA-92-7341 
        0.99        15.75         3.48 

$`XQ GAIN WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       48.82        20.45        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       54.28        71.34        79.20        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       82.19        21.70        68.45        49.48        55.40         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       47.87        16.83        35.34        38.83         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       46.78         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.36         1.45         1.78         1.35         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         3.29         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        58.42         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78        13.58         7.33        10.13 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.99              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            35.08            173.79 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            18.05             13.02 
[1] "1.0 - 35.1 (18.1)"  "0.0 - 173.8 (13.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      2    7
  XQ GAIN WILD-TYPE   81  235
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               2                81
  MALE                 7               235
D40V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                       0
  XQ GAIN WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                        0
  XQ GAIN WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ GAIN MUTATED                                        0
  XQ GAIN WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                         0
  XQ GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ GAIN MUTATED                                                             9
  XQ GAIN WILD-TYPE                                                         306
D40V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN MUTATED     3   5   0   1
  XQ GAIN WILD-TYPE  75 191  33  17
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               3                75
  T2               5               191
  T3               0                33
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED     7   2   0   0
  XQ GAIN WILD-TYPE 194  89  26   5
D40V7, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0               7               194
  N1               2                89
  N2               0                26
  N3               0                 5
                   vv
clus                 M0  M1  MX
  XQ GAIN MUTATED     8   0   1
  XQ GAIN WILD-TYPE 277   4  29
D40V8, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0               8               277
  M1               0                 4
  MX               1                29
                   vv
clus                  I  II III  IV
  XQ GAIN MUTATED     4   4   1   0
  XQ GAIN WILD-TYPE 161  86  61   4
D40V9, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 4               161
  II                4                86
  III               1                61
  IV                0                 4
D40V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      0    9
  XQ GAIN WILD-TYPE   11  305
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                0                11
  YES               9               305
D40V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ GAIN MUTATED                                             5
  XQ GAIN WILD-TYPE                                         153
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ GAIN MUTATED                                        2              2
  XQ GAIN WILD-TYPE                                     72             70
                   vv
clus                LIFELONG NON-SMOKER
  XQ GAIN MUTATED                     0
  XQ GAIN WILD-TYPE                  14
D40V12, multiclass
                                             clus
vv                                            XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5               153
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                72
  CURRENT SMOKER                                            2                70
  LIFELONG NON-SMOKER                                       0                14
D40V13, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ GAIN MUTATED     8   0   0   0
  XQ GAIN WILD-TYPE 245   6   4  16
D40V14, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  R0               8               245
  R1               0                 6
  R2               0                 4
  RX               0                16

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    25  18
  1P LOSS WILD-TYPE 163 102
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               43               265 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               18               102 
$`1P LOSS MUTATED`
TCGA-18-3415 TCGA-18-5592 TCGA-21-1075 TCGA-22-0940 TCGA-22-0944 TCGA-22-4599 
       59.51         3.02        70.13        19.99         7.33        38.17 
TCGA-22-4609 TCGA-22-5474 TCGA-22-5477 TCGA-22-5483 TCGA-22-5491 TCGA-33-4583 
        9.53        14.60        44.22        18.84        56.32       141.34 
TCGA-34-2600 TCGA-34-7107 TCGA-37-5819 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 
       61.61         1.08         3.39        60.76        24.33        36.39 
TCGA-43-3394 TCGA-46-3768 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-7223 
       11.57         9.96         0.59         2.07        28.93         0.99 
TCGA-56-7730 TCGA-60-2706 TCGA-66-2737 TCGA-66-2770 TCGA-66-2777 TCGA-66-2791 
        0.20        82.19         2.01        23.01         2.01         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-77-7139 
       30.02        54.08         4.01        49.05         2.73        89.95 
TCGA-77-7337 TCGA-77-8128 TCGA-77-8133 TCGA-85-7696 TCGA-85-7698 TCGA-85-8277 
      106.95        37.81        53.92         0.59         1.61         0.36 
TCGA-96-7544 
       39.88 

$`1P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       21.57        10.82        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        34.75        13.12        32.02        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5478 TCGA-22-5479 
       11.77        31.69        64.90        63.52         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
       71.34        79.20        11.74        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        5.52         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        8.09         7.46         7.82         6.81         0.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.28        18.08        13.12        18.84         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-51-4079 
        1.58        66.51         6.64         6.35         0.95         0.39 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        17.79         5.85        30.31         8.75        27.45 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.32         0.85         0.03        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        96.82        37.94        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01         7.07        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-7756 TCGA-68-7757 
       22.98         4.04        22.98        10.06         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 
       11.18        20.78         0.49        42.25        70.09         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
       46.78        15.75         6.51        86.76        53.95        82.92 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       12.59        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 
        0.36         0.79         1.12         0.33         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        0.46         1.18         0.43         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        1.55         2.93         0.59         3.29         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16         4.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.20              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           141.34            173.79 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            19.99             12.59 
[1] "0.2 - 141.3 (20.0)" "0.0 - 173.8 (12.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      4   44
  1P LOSS WILD-TYPE   79  198
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               4                79
  MALE                44               198
D41V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                       0
  1P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                        1
  1P LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P LOSS MUTATED                                        0
  1P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                         0
  1P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P LOSS MUTATED                                                            47
  1P LOSS WILD-TYPE                                                         268
D41V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED    15  24   6   3
  1P LOSS WILD-TYPE  63 172  27  15
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1              15                63
  T2              24               172
  T3               6                27
  T4               3                15
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED    25  18   4   1
  1P LOSS WILD-TYPE 176  73  22   4
D41V7, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0              25               176
  N1              18                73
  N2               4                22
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1P LOSS MUTATED    46   0   2
  1P LOSS WILD-TYPE 239   4  28
D41V8, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              46               239
  M1               0                 4
  MX               2                28
                   vv
clus                  I  II III  IV
  1P LOSS MUTATED    19  19  10   0
  1P LOSS WILD-TYPE 146  71  52   4
D41V9, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                19               146
  II               19                71
  III              10                52
  IV                0                 4
D41V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   45
  1P LOSS WILD-TYPE    8  269
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                3                 8
  YES              45               269
D41V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P LOSS MUTATED                                            21
  1P LOSS WILD-TYPE                                         137
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P LOSS MUTATED                                       11             14
  1P LOSS WILD-TYPE                                     63             58
                   vv
clus                LIFELONG NON-SMOKER
  1P LOSS MUTATED                     2
  1P LOSS WILD-TYPE                  12
D41V12, multiclass
                                             clus
vv                                            1P LOSS MUTATED 1P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              21               137
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   11                63
  CURRENT SMOKER                                           14                58
  LIFELONG NON-SMOKER                                       2                12
D41V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1P LOSS MUTATED    40   1   1   1
  1P LOSS WILD-TYPE 213   5   3  15
D41V14, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  R0              40               213
  R1               1                 5
  R2               1                 3
  RX               1                15

Clustering(42) Variable = 1q loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     3   3
  1Q LOSS WILD-TYPE 185 117
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6               302 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                3               117 
$`1Q LOSS MUTATED`
TCGA-22-5491 TCGA-39-5029 TCGA-39-5034 TCGA-46-6026 TCGA-56-7730 TCGA-96-7544 
       56.32        24.33        36.39         0.59         0.20        39.88 

$`1Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       18.84        30.08        62.86        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       70.03        60.76         1.71         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        6.64         6.35         9.96         0.95         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 
        0.99         1.45         1.32         0.85         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        0.46         1.18         0.43         0.36         1.45         1.78 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.35         1.55         2.93         0.59         3.29         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 
        4.70        58.42         6.18         6.90         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.20              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            56.32            173.79 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            30.36             13.07 
[1] "0.2 - 56.3 (30.4)"  "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    6
  1Q LOSS WILD-TYPE   82  236
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               1                82
  MALE                 6               236
D42V4, continuous
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                1                53 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5783        TCGA-21-5787 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5483        TCGA-22-5485        TCGA-22-5489 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-52-7810        TCGA-56-7222        TCGA-56-7822 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2698        TCGA-60-2712        TCGA-60-2715 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-92-7340        TCGA-92-7341 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454 
"1Q LOSS WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                       0
  1Q LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                        0
  1Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q LOSS MUTATED                                        0
  1Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                         0
  1Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q LOSS MUTATED                                                             7
  1Q LOSS WILD-TYPE                                                         308
D42V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED     2   3   2   0
  1Q LOSS WILD-TYPE  76 193  31  18
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               2                76
  T2               3               193
  T3               2                31
  T4               0                18
                   vv
clus                 N0  N1  N2  N3
  1Q LOSS MUTATED     3   3   1   0
  1Q LOSS WILD-TYPE 198  88  25   5
D42V7, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0               3               198
  N1               3                88
  N2               1                25
  N3               0                 5
                   vv
clus                 M0  M1  MX
  1Q LOSS MUTATED     6   0   1
  1Q LOSS WILD-TYPE 279   4  29
D42V8, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               6               279
  M1               0                 4
  MX               1                29
                   vv
clus                  I  II III  IV
  1Q LOSS MUTATED     1   4   2   0
  1Q LOSS WILD-TYPE 164  86  60   4
D42V9, multiclass
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  I                 1               164
  II                4                86
  III               2                60
  IV                0                 4
D42V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    6
  1Q LOSS WILD-TYPE   10  308
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                10
  YES               6               308
D42V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1Q LOSS MUTATED                                             2
  1Q LOSS WILD-TYPE                                         156
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1Q LOSS MUTATED                                        2              3
  1Q LOSS WILD-TYPE                                     72             69
                   vv
clus                LIFELONG NON-SMOKER
  1Q LOSS MUTATED                     0
  1Q LOSS WILD-TYPE                  14
D42V12, multiclass
                                             clus
vv                                            1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2               156
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                72
  CURRENT SMOKER                                            3                69
  LIFELONG NON-SMOKER                                       0                14
D42V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q LOSS MUTATED     4   0   1   0
  1Q LOSS WILD-TYPE 249   6   3  16
D42V14, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  R0               4               249
  R1               0                 6
  R2               1                 3
  RX               0                16

Clustering(43) Variable = 2q loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED     8   0
  2Q LOSS WILD-TYPE 180 120
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               300 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                0               120 
$`2Q LOSS MUTATED`
TCGA-21-1082 TCGA-21-5786 TCGA-37-4141 TCGA-51-4081 TCGA-60-2713 TCGA-66-2763 
      119.80        21.57         0.39         2.07        47.87         0.99 
TCGA-85-7699 TCGA-85-8288 
        0.03         1.78 

$`2Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       15.55        31.69       122.43         9.30         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       88.08        29.85        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         7.82         6.81         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         1.61         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.43         0.36         1.45         1.35         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        0.59         3.29         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16         4.70        39.88        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.03              0.03 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           119.80            173.79 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            1.925            13.350 
[1] "0.0 - 119.8 (1.9)"  "0.0 - 173.8 (13.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr="     "2.6e+07"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      2    6
  2Q LOSS WILD-TYPE   81  236
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               2                81
  MALE                 6               236
D43V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                       0
  2Q LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                        0
  2Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q LOSS MUTATED                                        0
  2Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                         0
  2Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q LOSS MUTATED                                                             8
  2Q LOSS WILD-TYPE                                                         307
D43V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     2   5   0   1
  2Q LOSS WILD-TYPE  76 191  33  17
D43V6, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               2                76
  T2               5               191
  T3               0                33
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  2Q LOSS MUTATED     6   2   0   0
  2Q LOSS WILD-TYPE 195  89  26   5
D43V7, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0               6               195
  N1               2                89
  N2               0                26
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2Q LOSS MUTATED     8   0   0
  2Q LOSS WILD-TYPE 277   4  30
D43V8, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0               8               277
  M1               0                 4
  MX               0                30
                   vv
clus                  I  II III  IV
  2Q LOSS MUTATED     5   2   1   0
  2Q LOSS WILD-TYPE 160  88  61   4
D43V9, multiclass
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  I                 5               160
  II                2                88
  III               1                61
  IV                0                 4
D43V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      0    8
  2Q LOSS WILD-TYPE   11  306
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                0                11
  YES               8               306
D43V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q LOSS MUTATED                                             1
  2Q LOSS WILD-TYPE                                         157
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q LOSS MUTATED                                        1              4
  2Q LOSS WILD-TYPE                                     73             68
                   vv
clus                LIFELONG NON-SMOKER
  2Q LOSS MUTATED                     1
  2Q LOSS WILD-TYPE                  13
D43V12, multiclass
                                             clus
vv                                            2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1               157
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                73
  CURRENT SMOKER                                            4                68
  LIFELONG NON-SMOKER                                       1                13
D43V13, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q LOSS MUTATED     8   0   0   0
  2Q LOSS WILD-TYPE 245   6   4  16
D43V14, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  R0               8               245
  R1               0                 6
  R2               0                 4
  RX               0                16

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    86  50
  3P LOSS WILD-TYPE 102  70
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              136               172 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               50                70 
$`3P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1075 
       28.34         6.15         2.79        90.51         3.02        70.13 
TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 
       31.69       119.80         8.78        88.08        21.57        10.82 
TCGA-22-0944 TCGA-22-4591 TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 
        7.33        20.45        38.17        13.12        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 
       11.77        64.90        63.52        14.60         0.79        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-33-4583 TCGA-33-4587 TCGA-33-6738 
       79.20        11.74        18.84       141.34        54.44        26.99 
TCGA-34-2600 TCGA-34-5231 TCGA-34-5239 TCGA-34-5929 TCGA-37-4129 TCGA-37-4130 
       61.61        50.24        10.82         4.96         6.54         8.09 
TCGA-37-4132 TCGA-37-4141 TCGA-39-5024 TCGA-39-5027 TCGA-39-5035 TCGA-39-5036 
        7.46         0.39        70.03        60.76        15.58        35.64 
TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-43-7656 TCGA-43-7658 
       13.12        18.84         7.00         2.79         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        6.64         6.35         0.39         0.39         2.07        17.79 
TCGA-52-7812 TCGA-56-1622 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
       27.45        28.93         0.99         0.43         1.45         1.32 
TCGA-56-7582 TCGA-56-7822 TCGA-60-2696 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.85         0.03         3.58        10.22        21.70        68.45 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
       55.40        29.19         9.01        30.61        26.07        24.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
       21.07         2.01         0.99        20.98         0.99         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
        2.01         7.07        23.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 
       12.00        24.95        25.97        22.98        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 
       30.02        10.06         4.01         2.73         6.64         8.02 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7142 
       29.56        73.08        75.09        23.28        89.95        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8128 TCGA-77-8130 TCGA-77-8140 
       70.09       106.95         0.16        37.81        82.92        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8154 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       26.40        27.39        35.90         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        1.25         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8277 TCGA-85-8288 TCGA-90-7767 TCGA-90-7964 TCGA-92-8063 TCGA-94-7033 
        0.36         1.78         2.93         3.29         4.01         2.86 
TCGA-94-7557 TCGA-96-8169 TCGA-96-8170 TCGA-98-8021 
        0.16         6.18         6.90        13.58 

$`3P LOSS WILD-TYPE`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       79.46         4.80        13.02        24.92         1.61        43.76 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       27.16       115.59        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0940 
       15.55       122.43         9.30        31.63        29.85        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 
       48.82        35.08        48.33        24.13         0.56        34.75 
TCGA-22-4605 TCGA-22-5471 TCGA-22-5477 TCGA-22-5479 TCGA-22-5485 TCGA-22-5489 
       32.02        31.69        44.22        54.28        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53        14.07        10.98        19.76         2.63 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
       31.50        28.96        32.84        31.23        51.78        32.68 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 
        9.04         7.73        14.07        22.95         5.52         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        3.95         0.43         0.39         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 
       47.80        74.07        44.71        68.58        55.17         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        36.39         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       18.28        18.08        11.57         8.48        18.05         6.02 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        5.42         3.78         1.58         9.96         0.95         0.59 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        5.85        30.31         8.75         0.10         2.04         1.02 
TCGA-56-7223 TCGA-56-7730 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        0.99         0.20        15.55        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2709 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       82.19        49.48        47.87        16.83        35.34        38.83 
TCGA-60-2720 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
        3.16        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
       43.10         2.01         0.99         1.02         0.92         0.99 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
       25.02         1.02         2.01        19.00         3.02         2.01 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2789 TCGA-66-2794 TCGA-66-2800 TCGA-68-7757 
        1.94        40.01         4.04        54.08        49.05         6.94 
TCGA-68-8251 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7463 TCGA-77-7465 
        3.12        11.18        20.78         0.49        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
        6.51        86.76        53.95        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 
       17.69       104.09         6.97         9.63        54.41         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-8048 
        0.36         0.79         1.12         0.59         1.15         0.85 
TCGA-85-8049 TCGA-85-8276 TCGA-85-8287 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 
        1.97         0.43         1.45         1.35         1.55         0.59 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7943 TCGA-96-7544 
        2.70         3.48         5.26         2.27         4.70        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78         7.33        10.13 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.10 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           141.34            173.79 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           11.885            15.240 
[1] "0.0 - 141.3 (11.9)" "0.1 - 173.8 (15.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     37  104
  3P LOSS WILD-TYPE   46  138
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              37                46
  MALE               104               138
D44V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                       2
  3P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                        1
  3P LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P LOSS MUTATED                                        0
  3P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                         1
  3P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P LOSS MUTATED                                                           137
  3P LOSS WILD-TYPE                                                         178
D44V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P LOSS MUTATED    35  85  13   8
  3P LOSS WILD-TYPE  43 111  20  10
D44V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              35                43
  T2              85               111
  T3              13                20
  T4               8                10
                   vv
clus                 N0  N1  N2  N3
  3P LOSS MUTATED    87  40  11   3
  3P LOSS WILD-TYPE 114  51  15   2
D44V7, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              87               114
  N1              40                51
  N2              11                15
  N3               3                 2
                   vv
clus                 M0  M1  MX
  3P LOSS MUTATED   124   2  11
  3P LOSS WILD-TYPE 161   2  19
D44V8, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0             124               161
  M1               2                 2
  MX              11                19
                   vv
clus                 I II III IV
  3P LOSS MUTATED   73 37  27  2
  3P LOSS WILD-TYPE 92 53  35  2
D44V9, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                73                92
  II               37                53
  III              27                35
  IV                2                 2
D44V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      6  135
  3P LOSS WILD-TYPE    5  179
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                6                 5
  YES             135               179
D44V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P LOSS MUTATED                                            75
  3P LOSS WILD-TYPE                                          83
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P LOSS MUTATED                                       30             28
  3P LOSS WILD-TYPE                                     44             44
                   vv
clus                LIFELONG NON-SMOKER
  3P LOSS MUTATED                     6
  3P LOSS WILD-TYPE                   8
D44V12, multiclass
                                             clus
vv                                            3P LOSS MUTATED 3P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              75                83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   30                44
  CURRENT SMOKER                                           28                44
  LIFELONG NON-SMOKER                                       6                 8
D44V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3P LOSS MUTATED   109   3   2   8
  3P LOSS WILD-TYPE 144   3   2   8
D44V14, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  R0             109               144
  R1               3                 3
  R2               2                 2
  RX               8                 8

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    11  11
  3Q LOSS WILD-TYPE 177 109
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               22               286 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               109 
$`3Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3416 TCGA-21-1075 TCGA-22-4604 TCGA-22-5483 
       81.07        11.34        28.34        70.13        13.12        18.84 
TCGA-37-4129 TCGA-43-2581 TCGA-56-1622 TCGA-56-7579 TCGA-60-2696 TCGA-60-2698 
        6.54        13.12        28.93         1.45         3.58        10.22 
TCGA-66-2754 TCGA-66-2769 TCGA-66-2791 TCGA-66-2793 TCGA-68-7755 TCGA-77-6843 
        2.01         7.07         5.03        10.06         2.73        73.08 
TCGA-77-8154 TCGA-85-8070 TCGA-85-8071 TCGA-94-7557 
       35.90         1.41         0.46         0.16 

$`3Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 
       48.33        24.13         0.56        38.17        34.75        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.39         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.08        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       15.55        12.23        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       43.10         2.01        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 
       30.02        54.08         4.01        49.05         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        8.02         3.12        29.56        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.85         1.97         0.53         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            81.07            173.79 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           10.140            14.085 
[1] "0.2 - 81.1 (10.1)"  "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      5   19
  3Q LOSS WILD-TYPE   78  223
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               5                78
  MALE                19               223
D45V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                       0
  3Q LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                        1
  3Q LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q LOSS MUTATED                                        0
  3Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                         0
  3Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q LOSS MUTATED                                                            23
  3Q LOSS WILD-TYPE                                                         292
D45V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED     5  13   4   2
  3Q LOSS WILD-TYPE  73 183  29  16
D45V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               5                73
  T2              13               183
  T3               4                29
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  3Q LOSS MUTATED    10  12   1   1
  3Q LOSS WILD-TYPE 191  79  25   4
D45V7, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0              10               191
  N1              12                79
  N2               1                25
  N3               1                 4
                   vv
clus                 M0  M1  MX
  3Q LOSS MUTATED    24   0   0
  3Q LOSS WILD-TYPE 261   4  30
D45V8, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              24               261
  M1               0                 4
  MX               0                30
                   vv
clus                  I  II III  IV
  3Q LOSS MUTATED     7   9   8   0
  3Q LOSS WILD-TYPE 158  81  54   4
D45V9, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                 7               158
  II                9                81
  III               8                54
  IV                0                 4
D45V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      0   24
  3Q LOSS WILD-TYPE   11  290
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                0                11
  YES              24               290
D45V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q LOSS MUTATED                                            11
  3Q LOSS WILD-TYPE                                         147
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q LOSS MUTATED                                        5              7
  3Q LOSS WILD-TYPE                                     69             65
                   vv
clus                LIFELONG NON-SMOKER
  3Q LOSS MUTATED                     1
  3Q LOSS WILD-TYPE                  13
D45V12, multiclass
                                             clus
vv                                            3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              11               147
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                69
  CURRENT SMOKER                                            7                65
  LIFELONG NON-SMOKER                                       1                13
D45V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q LOSS MUTATED    17   2   0   3
  3Q LOSS WILD-TYPE 236   4   4  13
D45V14, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  R0              17               236
  R1               2                 4
  R2               0                 4
  RX               3                13

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    88  44
  4P LOSS WILD-TYPE 100  76
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              132               176 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               44                76 
$`4P LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3415 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 
        4.47        46.52        59.51        43.76         6.15         3.02 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 
      115.59        46.88        34.78        31.69       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 
        8.78        31.63        21.57        19.99         7.33        14.10 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 
       48.33        38.17        13.12        19.30         9.53        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       63.52        14.60        44.22        18.84        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 
       56.32        82.98       114.05        97.94        43.10       141.34 
TCGA-33-4587 TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-34-5927 
       54.44        19.76        61.61        28.96        50.24        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
        5.52         4.96         1.08         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5027 TCGA-39-5031 
        6.81         0.39         3.39        74.07        60.76        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-2578 TCGA-43-3394 
       36.39        15.58        35.64         0.79        18.08        11.57 
TCGA-43-6143 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-46-6026 TCGA-51-4081 
        7.00         6.97         1.58         6.64         0.59         2.07 
TCGA-52-7810 TCGA-52-7812 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 
       30.31        27.45         0.99         0.43         0.99         0.85 
TCGA-56-7730 TCGA-60-2696 TCGA-60-2698 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
        0.20         3.58        10.22        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       47.87        16.83        30.61        26.07        24.10         1.22 
TCGA-66-2737 TCGA-66-2754 TCGA-66-2759 TCGA-66-2765 TCGA-66-2767 TCGA-66-2771 
        2.01         2.01        25.02         2.01         2.01        19.00 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 
        2.73         6.64        73.08        89.95        42.25        70.09 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       53.95        37.81         6.97         9.63        54.41        35.90 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-8052 TCGA-85-8070 
        0.59         0.33         1.61         0.03         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8288 TCGA-90-7766 TCGA-90-7964 
        0.46         1.18         0.36         1.78         1.55         3.29 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-98-8021 
        3.48         4.01         2.27         0.16         4.70        13.58 

$`4P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46         4.80        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       28.34        24.92         1.61         2.79        90.51        27.16 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5783 
       99.16        70.13        60.89        15.55         9.30        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       29.85        10.82        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        35.08        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4613 TCGA-22-5471 TCGA-22-5478 TCGA-22-5479 
       34.75        32.02        11.77        31.69         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5492 TCGA-33-4566 TCGA-33-4582 
       71.34        79.20        11.74        16.60       173.79       103.53 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 
       14.07        10.98        26.99         2.63        31.50        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.23        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 
       14.07         0.39         6.54         8.09         7.46        47.80 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
        1.94        17.88        18.28        13.12        18.84         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7658 
       18.05         6.02         2.79         5.42         3.78        66.51 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
        6.35         9.96         0.95         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        5.85         8.75        28.93         0.10         2.04         1.02 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 
        1.45         1.32         0.03        15.55        12.23        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2715 
       37.94        82.19        21.70        68.45        49.48        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       38.83         3.16        22.78        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
        0.99        20.98         0.99         1.02         2.01         7.07 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2782 TCGA-66-2787 TCGA-66-2788 
       23.01         3.02         2.01        12.00        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        4.04        22.98         6.94         8.02         3.12        29.56 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7337 
       75.09        23.28        11.18        20.78         0.49       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 
        0.16        46.78        15.75         6.51        86.76        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       26.40        27.39         0.33         0.36         0.79         1.12 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8276 
        1.15         1.25         1.97         0.85         1.97         0.43 
TCGA-85-8287 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-8064 
        1.45         1.35         2.93         0.59         2.70         5.26 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        2.86        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.03              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           141.34            173.79 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            14.35             12.41 
[1] "0.0 - 141.3 (14.3)" "0.0 - 173.8 (12.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     35  103
  4P LOSS WILD-TYPE   48  139
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              35                48
  MALE               103               139
D46V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                       2
  4P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                        1
  4P LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P LOSS MUTATED                                        0
  4P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                         1
  4P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P LOSS MUTATED                                                           134
  4P LOSS WILD-TYPE                                                         181
D46V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P LOSS MUTATED    34  77  17  10
  4P LOSS WILD-TYPE  44 119  16   8
D46V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              34                44
  T2              77               119
  T3              17                16
  T4              10                 8
                   vv
clus                 N0  N1  N2  N3
  4P LOSS MUTATED    82  38  13   4
  4P LOSS WILD-TYPE 119  53  13   1
D46V7, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              82               119
  N1              38                53
  N2              13                13
  N3               4                 1
                   vv
clus                 M0  M1  MX
  4P LOSS MUTATED   123   0  12
  4P LOSS WILD-TYPE 162   4  18
D46V8, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0             123               162
  M1               0                 4
  MX              12                18
                   vv
clus                  I  II III  IV
  4P LOSS MUTATED    65  37  34   0
  4P LOSS WILD-TYPE 100  53  28   4
D46V9, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                65               100
  II               37                53
  III              34                28
  IV                0                 4
D46V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      5  133
  4P LOSS WILD-TYPE    6  181
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                5                 6
  YES             133               181
D46V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P LOSS MUTATED                                            65
  4P LOSS WILD-TYPE                                          93
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P LOSS MUTATED                                       32             33
  4P LOSS WILD-TYPE                                     42             39
                   vv
clus                LIFELONG NON-SMOKER
  4P LOSS MUTATED                     5
  4P LOSS WILD-TYPE                   9
D46V12, multiclass
                                             clus
vv                                            4P LOSS MUTATED 4P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              65                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   32                42
  CURRENT SMOKER                                           33                39
  LIFELONG NON-SMOKER                                       5                 9
D46V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4P LOSS MUTATED   108   2   3   7
  4P LOSS WILD-TYPE 145   4   1   9
D46V14, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  R0             108               145
  R1               2                 4
  R2               3                 1
  RX               7                 9

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    74  41
  4Q LOSS WILD-TYPE 114  79
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              115               193 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               41                79 
$`4Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3415 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 
        4.47        46.52        59.51         6.15        90.51         3.02 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 
      115.59        46.88        99.16        70.13        34.78       122.43 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-22-0944 TCGA-22-1012 
      119.80         8.78        31.63        21.57         7.33        14.10 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       38.17        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       14.60        18.84        30.08        62.86        56.32        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 
      114.05        97.94       173.79       141.34        54.44        19.76 
TCGA-34-2600 TCGA-34-2605 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       61.61        28.96        22.95         5.52         4.96         1.08 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5027 TCGA-39-5031 
        7.82         6.81         0.39         3.39        60.76        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-43-2578 TCGA-43-3394 TCGA-43-6143 
       36.39        15.58        35.64        18.08        11.57         7.00 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        1.58        66.51         6.64         9.96         0.59         0.39 
TCGA-51-4081 TCGA-52-7810 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 
        2.07        30.31         0.99         0.43         0.99         0.85 
TCGA-56-7730 TCGA-60-2696 TCGA-60-2698 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
        0.20         3.58        10.22        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2722 TCGA-60-2724 TCGA-66-2737 TCGA-66-2754 
       16.83        30.61        24.10         1.22         2.01         2.01 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
        0.99         0.99         2.01        19.00        12.03         3.98 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        1.94        25.97         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-7139 
        4.01        49.05         2.73         6.64        73.08        89.95 
TCGA-77-7142 TCGA-77-8009 TCGA-77-8128 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       42.25        53.95        37.81         6.97         9.63        54.41 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        1.12         0.59         0.03         0.53         1.41         1.18 
TCGA-85-8277 TCGA-90-7964 TCGA-92-8063 TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 
        0.36         3.29         4.01         2.27         0.16         4.70 
TCGA-98-8021 
       13.58 

$`4Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46         4.80        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 
       28.34        24.92         1.61        43.76         2.79        27.16 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 
       60.89        15.55        31.69         9.30        88.08        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       10.82        19.99        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5477 
        0.56        34.75        32.02         9.53        31.69        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5492 
        0.79        54.28        71.34        79.20        11.74        16.60 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
       43.10       103.53        14.07        10.98        26.99         2.63 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       31.50        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 
        9.04        10.82         7.73        14.07         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 TCGA-39-5016 
        0.39         6.54         8.09         7.46        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 
        1.94         0.79        17.88        18.28        13.12        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-8116 TCGA-46-6025 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        6.97         6.35         0.95         0.39        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 
        1.45         1.32         0.03        15.55        12.23        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2725 
       35.34        38.83         3.16        26.07        22.78        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 
        0.92         0.99        20.98        25.02         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       12.00        24.95        40.01        22.98         4.04        22.98 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02         3.12        29.56        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       11.18        20.78         0.49        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 
       46.78        15.75         6.51        86.76        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 
       27.39        35.90         0.33         0.36         0.79         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.46         0.43         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 
        2.93         0.59         2.70         3.48         5.26         2.86 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 
       39.88        58.42         6.18         6.90         3.78         7.33 
TCGA-98-8023 
       10.13 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.03              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           173.79            106.95 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            13.12             13.12 
[1] "0.0 - 173.8 (13.1)" "0.0 - 107.0 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     36   83
  4Q LOSS WILD-TYPE   47  159
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              36                47
  MALE                83               159
D47V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                       1
  4Q LOSS WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                        1
  4Q LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q LOSS MUTATED                                        0
  4Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                         1
  4Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q LOSS MUTATED                                                           116
  4Q LOSS WILD-TYPE                                                         199
D47V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q LOSS MUTATED    27  69  14   9
  4Q LOSS WILD-TYPE  51 127  19   9
D47V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              27                51
  T2              69               127
  T3              14                19
  T4               9                 9
                   vv
clus                 N0  N1  N2  N3
  4Q LOSS MUTATED    76  32   8   2
  4Q LOSS WILD-TYPE 125  59  18   3
D47V7, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              76               125
  N1              32                59
  N2               8                18
  N3               2                 3
                   vv
clus                 M0  M1  MX
  4Q LOSS MUTATED   107   0   9
  4Q LOSS WILD-TYPE 178   4  21
D47V8, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0             107               178
  M1               0                 4
  MX               9                21
                   vv
clus                  I  II III  IV
  4Q LOSS MUTATED    61  29  27   0
  4Q LOSS WILD-TYPE 104  61  35   4
D47V9, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                61               104
  II               29                61
  III              27                35
  IV                0                 4
D47V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      5  114
  4Q LOSS WILD-TYPE    6  200
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                5                 6
  YES             114               200
D47V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q LOSS MUTATED                                            57
  4Q LOSS WILD-TYPE                                         101
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q LOSS MUTATED                                       28             29
  4Q LOSS WILD-TYPE                                     46             43
                   vv
clus                LIFELONG NON-SMOKER
  4Q LOSS MUTATED                     3
  4Q LOSS WILD-TYPE                  11
D47V12, multiclass
                                             clus
vv                                            4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              57               101
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   28                46
  CURRENT SMOKER                                           29                43
  LIFELONG NON-SMOKER                                       3                11
D47V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q LOSS MUTATED    93   2   2   7
  4Q LOSS WILD-TYPE 160   4   2   9
D47V14, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  R0              93               160
  R1               2                 4
  R2               2                 2
  RX               7                 9

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    10   9
  5P LOSS WILD-TYPE 178 111
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               19               289 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9               111 
$`5P LOSS MUTATED`
TCGA-18-4083 TCGA-22-5472 TCGA-22-5491 TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 
        6.15        64.90        56.32        19.76        28.96        50.24 
TCGA-37-4130 TCGA-43-2578 TCGA-51-4079 TCGA-52-7810 TCGA-56-7730 TCGA-66-2780 
        8.09        18.08         0.39        30.31         0.20        12.03 
TCGA-66-2791 TCGA-66-2793 TCGA-68-8250 TCGA-85-7698 TCGA-90-7964 TCGA-92-8063 
        5.03        10.06         8.02         1.61         3.29         4.01 
TCGA-94-7033 
        2.86 

$`5P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        61.61        31.50        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 
        0.99         1.45         1.32         0.85         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
       23.01        19.00         3.02         2.01        19.00         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04        22.98        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
        0.36         0.79         1.12         0.59         0.33         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.78         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        3.48         5.26         2.27         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.20              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            64.90            173.79 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             8.09             14.07 
[1] "0.2 - 64.9 (8.1)"   "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      4   18
  5P LOSS WILD-TYPE   79  224
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               4                79
  MALE                18               224
D48V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                       0
  5P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                        1
  5P LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P LOSS MUTATED                                        0
  5P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                         0
  5P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P LOSS MUTATED                                                            21
  5P LOSS WILD-TYPE                                                         294
D48V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED     8  10   2   2
  5P LOSS WILD-TYPE  70 186  31  16
D48V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               8                70
  T2              10               186
  T3               2                31
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED    15   4   2   1
  5P LOSS WILD-TYPE 186  87  24   4
D48V7, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              15               186
  N1               4                87
  N2               2                24
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5P LOSS MUTATED    17   0   4
  5P LOSS WILD-TYPE 268   4  26
D48V8, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0              17               268
  M1               0                 4
  MX               4                26
                   vv
clus                  I  II III  IV
  5P LOSS MUTATED    12   5   5   0
  5P LOSS WILD-TYPE 153  85  57   4
D48V9, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                12               153
  II                5                85
  III               5                57
  IV                0                 4
D48V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      2   20
  5P LOSS WILD-TYPE    9  294
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                2                 9
  YES              20               294
D48V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P LOSS MUTATED                                            11
  5P LOSS WILD-TYPE                                         147
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P LOSS MUTATED                                        4              5
  5P LOSS WILD-TYPE                                     70             67
                   vv
clus                LIFELONG NON-SMOKER
  5P LOSS MUTATED                     2
  5P LOSS WILD-TYPE                  12
D48V12, multiclass
                                             clus
vv                                            5P LOSS MUTATED 5P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              11               147
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                70
  CURRENT SMOKER                                            5                67
  LIFELONG NON-SMOKER                                       2                12
D48V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5P LOSS MUTATED    12   1   0   2
  5P LOSS WILD-TYPE 241   5   4  14
D48V14, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  R0              12               241
  R1               1                 5
  R2               0                 4
  RX               2                14

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    74  36
  5Q LOSS WILD-TYPE 114  84
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              110               198 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               36                84 
$`5Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 TCGA-18-4083 
       81.07         4.80        46.52        13.02        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-1082 
        2.79        90.51       115.59        99.16        31.69       119.80 
TCGA-21-5786 TCGA-22-0944 TCGA-22-4591 TCGA-22-4599 TCGA-22-4607 TCGA-22-4609 
       21.57         7.33        20.45        38.17        19.30         9.53 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5485 TCGA-22-5491 
       64.90        63.52        14.60        44.22        30.08        56.32 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 
      114.05        97.94        54.44        19.76        26.99        61.61 
TCGA-34-2605 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       28.96        50.24        10.82        22.95         4.96         1.08 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 TCGA-39-5027 
        8.09         7.46         7.82         6.81        74.07        60.76 
TCGA-39-5029 TCGA-39-5036 TCGA-43-2578 TCGA-43-3394 TCGA-43-6770 TCGA-43-8116 
       24.33        35.64        18.08        11.57         2.79         6.35 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 
        9.96         0.59         0.39         2.07        17.79        30.31 
TCGA-56-5897 TCGA-56-7221 TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 TCGA-60-2706 
        0.10         0.99         0.20         0.03         3.58        82.19 
TCGA-60-2707 TCGA-60-2710 TCGA-60-2711 TCGA-60-2714 TCGA-60-2721 TCGA-66-2753 
       21.70        55.40        29.19        16.83        26.07         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 TCGA-66-2780 
        0.92         0.99        25.02         0.99         7.07        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 
        3.98         1.94        22.98         4.04         5.03        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-77-7139 
       54.08        49.05         2.73         6.64         8.02        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 
        0.49        42.25       104.09        11.54        26.40         6.97 
TCGA-77-8148 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7950 TCGA-85-8052 
        9.63         1.12         0.33         1.61         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8288 TCGA-90-7766 
        1.41         0.46         1.18         0.36         1.78         1.55 
TCGA-90-7767 TCGA-90-7964 TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        2.93         3.29         4.01         2.86         0.16         4.70 
TCGA-96-7544 TCGA-98-8021 
       39.88        13.58 

$`5Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3412 TCGA-18-3415 TCGA-18-3417 
       12.16         4.47        79.46        11.34        59.51        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1075 
        1.61        43.76         3.02        27.16        46.88        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 
       60.89        34.78        15.55       122.43         9.30         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 
       31.63        88.08        29.85        10.82        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 
       35.08        48.33        24.13         0.56        34.75        13.12 
TCGA-22-4605 TCGA-22-4613 TCGA-22-5471 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       32.02        11.77        31.69         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 
       79.20        11.74        18.84        62.86        16.60        82.98 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       43.10       173.79       103.53       141.34        14.07        10.98 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
        2.63        31.50        32.84        31.23        51.78        32.68 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 
        9.04         7.73        14.07         5.52         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 
        0.39         6.54         0.39         3.39        47.80        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17        70.03         1.71         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       36.39        15.58         0.79        17.88        18.28        13.12 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 
       18.84         8.48        18.05         7.00         6.02         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-6025 
        3.78         6.97         1.58        66.51         6.64         0.95 
TCGA-51-4080 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 
        0.39         5.85         8.75        27.45        28.93         2.04 
TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        1.02         0.43         0.99         1.45         1.32         0.85 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 
       15.55        12.23        10.22        96.82        37.94        68.45 
TCGA-60-2709 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       49.48         9.01        47.87        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       16.96        43.10         2.01        21.07         0.99         2.01 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        20.98         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 
       23.01        19.00         3.02         2.01        19.00        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2790 TCGA-66-2792 TCGA-66-2795 
       24.95        25.97        40.01        22.98        30.02         4.01 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       11.18        20.78        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8144 TCGA-77-8150 
       12.59        53.92        39.09        17.69        27.39        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7699 
       35.90         0.33         0.36         0.79         0.59         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8276 TCGA-85-8287 
        1.15         1.25         0.85         1.97         0.43         1.45 
TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 
        1.35         0.59         2.70         3.48         5.26         2.27 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
       58.42         6.18         6.90         3.78         7.33        10.13 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.03              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           119.80            173.79 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            10.44             15.24 
[1] "0.0 - 119.8 (10.4)" "0.0 - 173.8 (15.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     28   89
  5Q LOSS WILD-TYPE   55  153
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              28                55
  MALE                89               153
D49V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                       1
  5Q LOSS WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                        1
  5Q LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q LOSS MUTATED                                        0
  5Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                         1
  5Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q LOSS MUTATED                                                           114
  5Q LOSS WILD-TYPE                                                         201
D49V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q LOSS MUTATED    31  61  13  12
  5Q LOSS WILD-TYPE  47 135  20   6
D49V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              31                47
  T2              61               135
  T3              13                20
  T4              12                 6
                   vv
clus                 N0  N1  N2  N3
  5Q LOSS MUTATED    79  25  10   2
  5Q LOSS WILD-TYPE 122  66  16   3
D49V7, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              79               122
  N1              25                66
  N2              10                16
  N3               2                 3
                   vv
clus                 M0  M1  MX
  5Q LOSS MUTATED   100   2  13
  5Q LOSS WILD-TYPE 185   2  17
D49V8, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0             100               185
  M1               2                 2
  MX              13                17
                   vv
clus                  I  II III  IV
  5Q LOSS MUTATED    60  24  30   2
  5Q LOSS WILD-TYPE 105  66  32   2
D49V9, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                60               105
  II               24                66
  III              30                32
  IV                2                 2
D49V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      5  112
  5Q LOSS WILD-TYPE    6  202
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                5                 6
  YES             112               202
D49V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q LOSS MUTATED                                            52
  5Q LOSS WILD-TYPE                                         106
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q LOSS MUTATED                                       25             33
  5Q LOSS WILD-TYPE                                     49             39
                   vv
clus                LIFELONG NON-SMOKER
  5Q LOSS MUTATED                     4
  5Q LOSS WILD-TYPE                  10
D49V12, multiclass
                                             clus
vv                                            5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              52               106
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   25                49
  CURRENT SMOKER                                           33                39
  LIFELONG NON-SMOKER                                       4                10
D49V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q LOSS MUTATED    81   4   1   7
  5Q LOSS WILD-TYPE 172   2   3   9
D49V14, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  R0              81               172
  R1               4                 2
  R2               1                 3
  RX               7                 9

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    20  12
  6P LOSS WILD-TYPE 168 108
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               32               276 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               12               108 
$`6P LOSS MUTATED`
TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-5592 TCGA-22-0940 TCGA-22-4599 
       59.51        28.34         6.15         3.02        19.99        38.17 
TCGA-22-4609 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5483 TCGA-22-5492 
        9.53        63.52        44.22         0.79        18.84        16.60 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5027 TCGA-39-5034 TCGA-43-6143 TCGA-46-3768 
        3.39        74.07        60.76        36.39         7.00         9.96 
TCGA-51-4081 TCGA-56-7579 TCGA-56-7582 TCGA-60-2707 TCGA-66-2792 TCGA-66-2794 
        2.07         1.45         0.85        21.70        30.02        54.08 
TCGA-77-8009 TCGA-77-8128 TCGA-85-8070 TCGA-85-8277 TCGA-90-7767 TCGA-92-7341 
       53.95        37.81         1.41         0.36         2.93         3.48 
TCGA-92-8065 TCGA-96-7544 
        2.27        39.88 

$`6P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       11.34        13.02        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       10.82         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        34.75        13.12        32.02        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
       11.77        31.69        64.90        14.60        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       79.20        11.74        30.08        62.86        56.32        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        47.80        44.71        68.58        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48        18.05         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        0.95         0.59         0.39         0.39        17.79         5.85 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 
        1.02         0.99         0.43         0.99         1.32         0.20 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.03        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        82.19        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       40.01        22.98         4.04        22.98         5.03        10.06 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 
        0.16        46.78        15.75         6.51        86.76        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        1.97         0.53         0.46         1.18         0.43         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.78         1.35         1.55         0.59         3.29         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 
        4.01         5.26         2.86         0.16         4.70        58.42 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78        13.58         7.33        10.13 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.36              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            74.07            173.79 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            17.72             13.07 
[1] "0.4 - 74.1 (17.7)"  "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      4   29
  6P LOSS WILD-TYPE   79  213
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               4                79
  MALE                29               213
D50V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                       2
  6P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                        1
  6P LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P LOSS MUTATED                                        0
  6P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                         0
  6P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P LOSS MUTATED                                                            30
  6P LOSS WILD-TYPE                                                         285
D50V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS MUTATED     4  21   7   1
  6P LOSS WILD-TYPE  74 175  26  17
D50V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               4                74
  T2              21               175
  T3               7                26
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  6P LOSS MUTATED    16  13   4   0
  6P LOSS WILD-TYPE 185  78  22   5
D50V7, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              16               185
  N1              13                78
  N2               4                22
  N3               0                 5
                   vv
clus                 M0  M1  MX
  6P LOSS MUTATED    29   0   4
  6P LOSS WILD-TYPE 256   4  26
D50V8, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              29               256
  M1               0                 4
  MX               4                26
                   vv
clus                  I  II III  IV
  6P LOSS MUTATED    12  15   6   0
  6P LOSS WILD-TYPE 153  75  56   4
D50V9, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                12               153
  II               15                75
  III               6                56
  IV                0                 4
D50V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      0   33
  6P LOSS WILD-TYPE   11  281
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                0                11
  YES              33               281
D50V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P LOSS MUTATED                                            13
  6P LOSS WILD-TYPE                                         145
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P LOSS MUTATED                                        9              9
  6P LOSS WILD-TYPE                                     65             63
                   vv
clus                LIFELONG NON-SMOKER
  6P LOSS MUTATED                     2
  6P LOSS WILD-TYPE                  12
D50V12, multiclass
                                             clus
vv                                            6P LOSS MUTATED 6P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              13               145
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                65
  CURRENT SMOKER                                            9                63
  LIFELONG NON-SMOKER                                       2                12
D50V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6P LOSS MUTATED    27   0   0   4
  6P LOSS WILD-TYPE 226   6   4  12
D50V14, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  R0              27               226
  R1               0                 6
  R2               0                 4
  RX               4                12

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    23   8
  6Q LOSS WILD-TYPE 165 112
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               31               277 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                8               112 
$`6Q LOSS MUTATED`
TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-5592 TCGA-22-4599 TCGA-22-4601 
       59.51        28.34         6.15         3.02        38.17        34.75 
TCGA-22-4607 TCGA-22-5478 TCGA-22-5492 TCGA-34-5928 TCGA-37-5819 TCGA-39-5016 
       19.30         0.79        16.60         5.52         3.39        74.07 
TCGA-39-5027 TCGA-39-5034 TCGA-43-2581 TCGA-43-6143 TCGA-52-7812 TCGA-56-7582 
       60.76        36.39        13.12         7.00        27.45         0.85 
TCGA-56-7730 TCGA-60-2707 TCGA-66-2763 TCGA-66-2783 TCGA-66-2792 TCGA-66-2795 
        0.20        21.70         0.99        24.95        30.02         4.01 
TCGA-77-8009 TCGA-85-7698 TCGA-85-8277 TCGA-90-7767 TCGA-92-7341 TCGA-92-8065 
       53.95         1.61         0.36         2.93         3.48         2.27 
TCGA-96-7544 
       39.88 

$`6Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       11.34        13.02        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
       48.33        24.13         0.56        13.12        32.02         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       10.82         7.73        14.07        22.95         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39        47.80        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48        18.05         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 
        2.07        17.79         5.85        30.31         8.75        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.03        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 
       10.22        96.82        37.94        82.19        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       40.01        22.98         4.04        22.98         5.03        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       54.08        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
        0.16        46.78        15.75         6.51        86.76        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        1.45         1.78         1.35         1.55         0.59         3.29 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        2.70         4.01         5.26         2.86         0.16         4.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.20              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            74.07            173.79 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            13.12             13.12 
[1] "0.2 - 74.1 (13.1)"  "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      9   25
  6Q LOSS WILD-TYPE   74  217
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE               9                74
  MALE                25               217
D51V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                       2
  6Q LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                        1
  6Q LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q LOSS MUTATED                                        0
  6Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                         0
  6Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q LOSS MUTATED                                                            31
  6Q LOSS WILD-TYPE                                                         284
D51V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS MUTATED     2  25   5   2
  6Q LOSS WILD-TYPE  76 171  28  16
D51V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1               2                76
  T2              25               171
  T3               5                28
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  6Q LOSS MUTATED    19  11   3   1
  6Q LOSS WILD-TYPE 182  80  23   4
D51V7, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              19               182
  N1              11                80
  N2               3                23
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6Q LOSS MUTATED    30   0   4
  6Q LOSS WILD-TYPE 255   4  26
D51V8, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              30               255
  M1               0                 4
  MX               4                26
                   vv
clus                  I  II III  IV
  6Q LOSS MUTATED    13  15   6   0
  6Q LOSS WILD-TYPE 152  75  56   4
D51V9, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                13               152
  II               15                75
  III               6                56
  IV                0                 4
D51V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      0   34
  6Q LOSS WILD-TYPE   11  280
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                0                11
  YES              34               280
D51V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q LOSS MUTATED                                            14
  6Q LOSS WILD-TYPE                                         144
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q LOSS MUTATED                                       10              8
  6Q LOSS WILD-TYPE                                     64             64
                   vv
clus                LIFELONG NON-SMOKER
  6Q LOSS MUTATED                     2
  6Q LOSS WILD-TYPE                  12
D51V12, multiclass
                                             clus
vv                                            6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14               144
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   10                64
  CURRENT SMOKER                                            8                64
  LIFELONG NON-SMOKER                                       2                12
D51V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q LOSS MUTATED    24   0   1   4
  6Q LOSS WILD-TYPE 229   6   3  12
D51V14, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  R0              24               229
  R1               0                 6
  R2               1                 3
  RX               4                12

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    13   6
  7P LOSS WILD-TYPE 175 114
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               289 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6               114 
$`7P LOSS MUTATED`
TCGA-18-3419 TCGA-21-1083 TCGA-21-5786 TCGA-22-4601 TCGA-22-5492 TCGA-33-6738 
        1.61         8.78        21.57        34.75        16.60        26.99 
TCGA-37-3789 TCGA-37-5819 TCGA-39-5036 TCGA-46-6026 TCGA-56-1622 TCGA-66-2757 
        0.43         3.39        35.64         0.59        28.93         0.99 
TCGA-66-2783 TCGA-66-2792 TCGA-66-2793 TCGA-77-7142 TCGA-77-7337 TCGA-77-8144 
       24.95        30.02        10.06        42.25       106.95        27.39 
TCGA-85-8070 
        1.41 

$`7P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43         9.30       119.80        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       35.08        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 
      141.34        14.07        54.44        10.98        19.76         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
       22.95         5.52         4.96         1.08         3.95         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       15.58         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        6.64         6.35         9.96         0.95         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 
        1.45         1.32         0.85         0.20         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       22.98         5.03        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
       70.09         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       17.69       104.09        11.54        26.40         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 
        1.97         0.85         1.97         0.53         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        2.93         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.43              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           106.95            173.79 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            21.57             13.02 
[1] "0.4 - 107.0 (21.6)" "0.0 - 173.8 (13.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      4   16
  7P LOSS WILD-TYPE   79  226
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               4                79
  MALE                16               226
D52V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                       0
  7P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                        0
  7P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P LOSS MUTATED                                        0
  7P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                         0
  7P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P LOSS MUTATED                                                            20
  7P LOSS WILD-TYPE                                                         295
D52V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     4  14   0   2
  7P LOSS WILD-TYPE  74 182  33  16
D52V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               4                74
  T2              14               182
  T3               0                33
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED    11   5   3   1
  7P LOSS WILD-TYPE 190  86  23   4
D52V7, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0              11               190
  N1               5                86
  N2               3                23
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7P LOSS MUTATED    18   0   1
  7P LOSS WILD-TYPE 267   4  29
D52V8, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0              18               267
  M1               0                 4
  MX               1                29
                   vv
clus                  I  II III  IV
  7P LOSS MUTATED    10   4   6   0
  7P LOSS WILD-TYPE 155  86  56   4
D52V9, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                10               155
  II                4                86
  III               6                56
  IV                0                 4
D52V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1   19
  7P LOSS WILD-TYPE   10  295
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                10
  YES              19               295
D52V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P LOSS MUTATED                                            11
  7P LOSS WILD-TYPE                                         147
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P LOSS MUTATED                                        2              6
  7P LOSS WILD-TYPE                                     72             66
                   vv
clus                LIFELONG NON-SMOKER
  7P LOSS MUTATED                     1
  7P LOSS WILD-TYPE                  13
D52V12, multiclass
                                             clus
vv                                            7P LOSS MUTATED 7P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              11               147
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                72
  CURRENT SMOKER                                            6                66
  LIFELONG NON-SMOKER                                       1                13
D52V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7P LOSS MUTATED    17   0   2   0
  7P LOSS WILD-TYPE 236   6   2  16
D52V14, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  R0              17               236
  R1               0                 6
  R2               2                 2
  RX               0                16

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     7   3
  7Q LOSS WILD-TYPE 181 117
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               10               298 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3               117 
$`7Q LOSS MUTATED`
TCGA-21-1082 TCGA-21-5786 TCGA-22-5481 TCGA-37-3789 TCGA-37-5819 TCGA-46-6026 
      119.80        21.57        79.20         0.43         3.39         0.59 
TCGA-56-1622 TCGA-66-2754 TCGA-66-2773 TCGA-77-8144 
       28.93         2.01         3.02        27.39 

$`7Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       15.55        31.69       122.43         9.30         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       88.08        29.85        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       54.28        71.34        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        9.96         0.95         0.39         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 
        5.85        30.31         8.75        27.45         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.85         0.20         0.03        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         7.07        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        1.78         1.35         1.55         2.93         0.59         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.43              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           119.80            173.79 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            12.48             13.12 
[1] "0.4 - 119.8 (12.5)" "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1    9
  7Q LOSS WILD-TYPE   82  233
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               1                82
  MALE                 9               233
D53V4, continuous
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                1                53 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5783        TCGA-21-5787 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5483        TCGA-22-5485        TCGA-22-5489 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5491        TCGA-22-5492        TCGA-34-5234        TCGA-37-4129 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-52-7810        TCGA-56-7222        TCGA-56-7822 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2698        TCGA-60-2712        TCGA-60-2715 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-92-7340        TCGA-92-7341 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454 
"7Q LOSS WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                       0
  7Q LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                        0
  7Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q LOSS MUTATED                                        0
  7Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                         0
  7Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q LOSS MUTATED                                                            10
  7Q LOSS WILD-TYPE                                                         305
D53V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     0  10   0   0
  7Q LOSS WILD-TYPE  78 186  33  18
D53V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               0                78
  T2              10               186
  T3               0                33
  T4               0                18
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED     6   2   2   0
  7Q LOSS WILD-TYPE 195  89  24   5
D53V7, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0               6               195
  N1               2                89
  N2               2                24
  N3               0                 5
                   vv
clus                 M0  M1  MX
  7Q LOSS MUTATED     9   0   0
  7Q LOSS WILD-TYPE 276   4  30
D53V8, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0               9               276
  M1               0                 4
  MX               0                30
                   vv
clus                  I  II III  IV
  7Q LOSS MUTATED     6   2   2   0
  7Q LOSS WILD-TYPE 159  88  60   4
D53V9, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 6               159
  II                2                88
  III               2                60
  IV                0                 4
D53V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1    9
  7Q LOSS WILD-TYPE   10  305
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                10
  YES               9               305
D53V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q LOSS MUTATED                                             3
  7Q LOSS WILD-TYPE                                         155
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q LOSS MUTATED                                        3              2
  7Q LOSS WILD-TYPE                                     71             70
                   vv
clus                LIFELONG NON-SMOKER
  7Q LOSS MUTATED                     1
  7Q LOSS WILD-TYPE                  13
D53V12, multiclass
                                             clus
vv                                            7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3               155
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                71
  CURRENT SMOKER                                            2                70
  LIFELONG NON-SMOKER                                       1                13
D53V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q LOSS MUTATED     9   0   1   0
  7Q LOSS WILD-TYPE 244   6   3  16
D53V14, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  R0               9               244
  R1               0                 6
  R2               1                 3
  RX               0                16

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    55  35
  8P LOSS WILD-TYPE 133  85
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               90               218 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               35                85 
$`8P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3415 TCGA-18-3419 TCGA-18-4721 TCGA-18-5592 TCGA-21-1080 
       12.16        59.51         1.61        90.51         3.02       122.43 
TCGA-21-1083 TCGA-21-5782 TCGA-22-1002 TCGA-22-4591 TCGA-22-4594 TCGA-22-4601 
        8.78        31.63         4.31        20.45        48.33        34.75 
TCGA-22-4604 TCGA-22-4609 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       13.12         9.53        44.22         0.79        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 TCGA-33-4566 
       18.84        30.08        56.32        16.60        43.10       173.79 
TCGA-33-4582 TCGA-33-6738 TCGA-34-2609 TCGA-34-5236 TCGA-37-3783 TCGA-37-3789 
      103.53        26.99        31.23         9.04         3.95         0.43 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5027 TCGA-43-6143 TCGA-43-6770 TCGA-43-7657 
        6.81         0.39        60.76         7.00         2.79         1.58 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-51-4080 TCGA-51-4081 TCGA-52-7810 
        6.64         6.35         9.96         0.39         2.07        30.31 
TCGA-52-7812 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-60-2711 
       27.45         0.43         0.99         1.45         1.32        29.19 
TCGA-60-2721 TCGA-66-2727 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 
       26.07        16.96         2.01         1.02         2.01         0.99 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2768 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       25.02         1.02         2.01        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2795 TCGA-68-7755 TCGA-68-8250 TCGA-77-6842 
       24.95         1.94         4.01         2.73         8.02        29.56 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7337 TCGA-77-8008 TCGA-77-8009 TCGA-77-8140 
       23.28        11.18       106.95        86.76        53.95        11.54 
TCGA-77-8145 TCGA-77-8154 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        6.97        35.90         1.12         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-90-7766 TCGA-90-7767 
        1.25         1.41         0.43         0.36         1.55         2.93 
TCGA-92-7341 TCGA-92-8063 TCGA-94-7557 TCGA-96-7544 TCGA-98-8021 TCGA-98-8022 
        3.48         4.01         0.16        39.88        13.58         7.33 

$`8P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        28.34        24.92        43.76         6.15         2.79 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       27.16       115.59        46.88        99.16        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5783 
       34.78        15.55        31.69         9.30       119.80        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 
       24.13         0.56        38.17        32.02        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5482 
       31.69        64.90        63.52        14.60        54.28        11.74 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 
       62.86        82.98       114.05        97.94       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       28.96        32.84        50.24        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 
        0.39         6.54         8.09         7.46         7.82         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 
       11.57        18.84         8.48        18.05         6.02         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        3.78         6.97        66.51         0.95         0.59         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       17.79         5.85         8.75        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 
        1.02         0.99         0.85         0.20         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        49.48        55.40         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
       16.83        35.34        38.83        30.61         3.16        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 
       22.78         1.22        23.64        11.77        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        0.99         0.92         0.99        20.98         0.99         2.01 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       19.00        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7756 
        5.03        30.02        10.06        54.08        49.05         6.64 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 
        6.94         3.12        73.08        75.09        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        0.49        42.25        70.09         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
        6.51        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 
       17.69       104.09        26.40        27.39         9.63        54.41 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7699 TCGA-85-7950 
        0.33         0.36         0.79         0.59         0.03         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 
        0.85         1.97         0.53         0.46         1.18         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-8064 
        1.78         1.35         0.59         3.29         2.70         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.27         2.86         4.70        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8023 
        3.78        10.13 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.16              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           173.79            141.34 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             8.40             16.29 
[1] "0.2 - 173.8 (8.4)"  "0.0 - 141.3 (16.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     22   73
  8P LOSS WILD-TYPE   61  169
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              22                61
  MALE                73               169
D54V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                       2
  8P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                        0
  8P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P LOSS MUTATED                                        0
  8P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                         0
  8P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P LOSS MUTATED                                                            93
  8P LOSS WILD-TYPE                                                         222
D54V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P LOSS MUTATED    27  49  14   5
  8P LOSS WILD-TYPE  51 147  19  13
D54V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              27                51
  T2              49               147
  T3              14                19
  T4               5                13
                   vv
clus                 N0  N1  N2  N3
  8P LOSS MUTATED    56  28  10   1
  8P LOSS WILD-TYPE 145  63  16   4
D54V7, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              56               145
  N1              28                63
  N2              10                16
  N3               1                 4
                   vv
clus                 M0  M1  MX
  8P LOSS MUTATED    81   0  11
  8P LOSS WILD-TYPE 204   4  19
D54V8, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              81               204
  M1               0                 4
  MX              11                19
                   vv
clus                  I  II III  IV
  8P LOSS MUTATED    46  28  20   0
  8P LOSS WILD-TYPE 119  62  42   4
D54V9, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                46               119
  II               28                62
  III              20                42
  IV                0                 4
D54V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      1   94
  8P LOSS WILD-TYPE   10  220
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                1                10
  YES              94               220
D54V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P LOSS MUTATED                                            48
  8P LOSS WILD-TYPE                                         110
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P LOSS MUTATED                                       13             28
  8P LOSS WILD-TYPE                                     61             44
                   vv
clus                LIFELONG NON-SMOKER
  8P LOSS MUTATED                     4
  8P LOSS WILD-TYPE                  10
D54V12, multiclass
                                             clus
vv                                            8P LOSS MUTATED 8P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              48               110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   13                61
  CURRENT SMOKER                                           28                44
  LIFELONG NON-SMOKER                                       4                10
D54V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8P LOSS MUTATED    76   2   1   3
  8P LOSS WILD-TYPE 177   4   3  13
D54V14, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  R0              76               177
  R1               2                 4
  R2               1                 3
  RX               3                13

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     8   1
  8Q LOSS WILD-TYPE 180 119
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9               299 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                1               119 
$`8Q LOSS MUTATED`
TCGA-22-5483 TCGA-37-4135 TCGA-37-4141 TCGA-43-6143 TCGA-56-7730 TCGA-66-2766 
       18.84         6.81         0.39         7.00         0.20         1.02 
TCGA-77-8154 TCGA-85-7844 TCGA-85-8276 
       35.90         1.25         0.43 

$`8Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 
        6.54         8.09         7.46         7.82         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48        18.05         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        2.07        17.79         5.85        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 
        0.99         1.45         1.32         0.85         0.03        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        0.99         2.01         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 
        1.97         0.53         1.41         0.46         1.18         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        58.42         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78        13.58         7.33        10.13 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.20              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            35.90            173.79 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             1.25             14.07 
[1] "0.2 - 35.9 (1.2)"   "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      1    8
  8Q LOSS WILD-TYPE   82  234
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               1                82
  MALE                 8               234
D55V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                       1
  8Q LOSS WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                        0
  8Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q LOSS MUTATED                                        0
  8Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                         0
  8Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q LOSS MUTATED                                                             8
  8Q LOSS WILD-TYPE                                                         307
D55V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     4   5   0   0
  8Q LOSS WILD-TYPE  74 191  33  18
D55V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               4                74
  T2               5               191
  T3               0                33
  T4               0                18
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED     5   3   1   0
  8Q LOSS WILD-TYPE 196  88  25   5
D55V7, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               5               196
  N1               3                88
  N2               1                25
  N3               0                 5
                   vv
clus                 M0  M1  MX
  8Q LOSS MUTATED     9   0   0
  8Q LOSS WILD-TYPE 276   4  30
D55V8, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               9               276
  M1               0                 4
  MX               0                30
                   vv
clus                  I  II III  IV
  8Q LOSS MUTATED     3   4   2   0
  8Q LOSS WILD-TYPE 162  86  60   4
D55V9, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 3               162
  II                4                86
  III               2                60
  IV                0                 4
D55V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0    9
  8Q LOSS WILD-TYPE   11  305
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                11
  YES               9               305
D55V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q LOSS MUTATED                                             4
  8Q LOSS WILD-TYPE                                         154
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q LOSS MUTATED                                        1              3
  8Q LOSS WILD-TYPE                                     73             69
                   vv
clus                LIFELONG NON-SMOKER
  8Q LOSS MUTATED                     1
  8Q LOSS WILD-TYPE                  13
D55V12, multiclass
                                             clus
vv                                            8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4               154
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                73
  CURRENT SMOKER                                            3                69
  LIFELONG NON-SMOKER                                       1                13
D55V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q LOSS MUTATED     7   0   0   1
  8Q LOSS WILD-TYPE 246   6   4  15
D55V14, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  R0               7               246
  R1               0                 6
  R2               0                 4
  RX               1                15

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    78  46
  9P LOSS WILD-TYPE 110  74
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              124               184 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               46                74 
$`9P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3411 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 
       12.16        79.46        46.52        59.51         1.61         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 
        2.79         3.02        46.88        70.13        34.78       122.43 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-22-1012 TCGA-22-4591 
      119.80         8.78        88.08        21.57        14.10        20.45 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        19.30         9.53        11.77        64.90 
TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-33-4538 TCGA-33-4547 
        0.79        11.74        30.08        56.32        97.94        43.10 
TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 
       54.44        19.76        26.99        28.96        31.23        50.24 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-39-5027 TCGA-39-5029 
        4.96         0.43         6.81         0.39        60.76        24.33 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 
       27.35        36.39        15.58        18.28        11.57        18.84 
TCGA-43-6770 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 
        2.79         6.97         1.58         6.64         6.35         0.59 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-7221 TCGA-56-7222 
        2.07         5.85        30.31        28.93         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-60-2696 
        0.99         1.45         1.32         0.20         0.03         3.58 
TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2719 TCGA-60-2721 
       10.22        82.19        21.70        29.19        30.61        26.07 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 
        1.22        16.96         2.01        21.07         1.02         0.92 
TCGA-66-2756 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
        0.99        25.02         2.01         1.02         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 
       19.00         3.02        19.00         3.98        12.00         1.94 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-66-2794 TCGA-77-6843 
       25.97         4.04        22.98        10.06        54.08        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-8009 
       75.09        23.28        42.25       106.95         0.16        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       37.81        82.92        11.54        26.40        27.39         6.97 
TCGA-77-8154 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7950 TCGA-85-8288 
       35.90         0.59         0.33         0.03         1.97         1.78 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        1.55         2.93         3.29         4.01         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-98-8021 
        0.16         4.70         6.18        13.58 

$`9P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 
        4.47        81.07         4.80        11.34        13.02        28.34 
TCGA-18-3417 TCGA-18-3421 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1072 
       24.92        43.76        90.51        27.16       115.59        99.16 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        15.55        31.69         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        27.02        48.82        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
        0.56        13.12        32.02        31.69        63.52        14.60 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 
       44.22        54.28        71.34        79.20        18.84        62.86 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       16.60        82.98       114.05       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       14.07        10.98         2.63        61.61        31.50        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 
       22.95         5.52         1.08         3.95         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        8.09         7.46         7.82         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 
       44.71        68.58        55.17        70.03         1.71         1.94 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 
       35.64         0.79        17.88        18.08        13.12         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7658 
       18.05         7.00         6.02         5.42         3.78        66.51 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 
        9.96         0.95         0.39         0.39        17.79         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7582 TCGA-60-2695 
       27.45         0.10         2.04         1.02         0.85        15.55 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       12.23        96.82        37.94        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
        9.01        47.87        16.83        35.34        38.83         3.16 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2744 
       24.10        22.78        23.64        11.77        43.10         0.99 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2770 
        2.01         0.99        20.98         0.99         2.01        23.01 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
        2.01        12.03        24.95        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       30.02         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
        8.02         3.12        29.56        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
        0.49        70.09        46.78        15.75         6.51        86.76 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8148 
       12.59        53.92        39.09        17.69       104.09         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 
       54.41         0.33         0.36         0.79         1.12         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-90-6837 
        0.46         1.18         0.43         0.36         1.45         1.35 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-96-7544 TCGA-96-7545 
        0.59         2.70         3.48         5.26        39.88        58.42 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78         7.33        10.13 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.10 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           122.43            173.79 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           11.885            14.070 
[1] "0.0 - 122.4 (11.9)" "0.1 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     31  103
  9P LOSS WILD-TYPE   52  139
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              31                52
  MALE               103               139
D56V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                       2
  9P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                        1
  9P LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P LOSS MUTATED                                        0
  9P LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                         1
  9P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P LOSS MUTATED                                                           130
  9P LOSS WILD-TYPE                                                         185
D56V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P LOSS MUTATED    33  78  14   9
  9P LOSS WILD-TYPE  45 118  19   9
D56V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              33                45
  T2              78               118
  T3              14                19
  T4               9                 9
                   vv
clus                 N0  N1  N2  N3
  9P LOSS MUTATED    86  32  13   2
  9P LOSS WILD-TYPE 115  59  13   3
D56V7, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              86               115
  N1              32                59
  N2              13                13
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9P LOSS MUTATED   116   1  14
  9P LOSS WILD-TYPE 169   3  16
D56V8, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0             116               169
  M1               1                 3
  MX              14                16
                   vv
clus                 I II III IV
  9P LOSS MUTATED   68 34  28  1
  9P LOSS WILD-TYPE 97 56  34  3
D56V9, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                68                97
  II               34                56
  III              28                34
  IV                1                 3
D56V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      5  129
  9P LOSS WILD-TYPE    6  185
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                5                 6
  YES             129               185
D56V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P LOSS MUTATED                                            65
  9P LOSS WILD-TYPE                                          93
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P LOSS MUTATED                                       29             34
  9P LOSS WILD-TYPE                                     45             38
                   vv
clus                LIFELONG NON-SMOKER
  9P LOSS MUTATED                     5
  9P LOSS WILD-TYPE                   9
D56V12, multiclass
                                             clus
vv                                            9P LOSS MUTATED 9P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              65                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   29                45
  CURRENT SMOKER                                           34                38
  LIFELONG NON-SMOKER                                       5                 9
D56V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9P LOSS MUTATED   100   4   2   9
  9P LOSS WILD-TYPE 153   2   2   7
D56V14, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  R0             100               153
  R1               4                 2
  R2               2                 2
  RX               9                 7

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    52  27
  9Q LOSS WILD-TYPE 136  93
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               79               229 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               27                93 
$`9Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3419 TCGA-18-4083 TCGA-21-1070 TCGA-21-1075 
       12.16        79.46         1.61         6.15       115.59        70.13 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-22-1012 TCGA-22-4591 
      119.80         8.78        31.63        21.57        14.10        20.45 
TCGA-22-4607 TCGA-22-5478 TCGA-33-4547 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 
       19.30         0.79        43.10        54.44        19.76        26.99 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5928 TCGA-34-5929 TCGA-37-4135 TCGA-37-4141 
       31.23        50.24         5.52         4.96         6.81         0.39 
TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-3920 TCGA-43-7656 TCGA-43-7657 
       36.39        15.58        18.28        18.84         6.97         1.58 
TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 TCGA-51-4081 TCGA-52-7810 TCGA-56-7223 
        6.64         6.35         0.59         2.07        30.31         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2719 
        1.45         1.32         3.58        10.22        82.19        30.61 
TCGA-60-2721 TCGA-60-2724 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 
       26.07         1.22         2.01        21.07         1.02         0.92 
TCGA-66-2756 TCGA-66-2763 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        0.99         0.99         7.07        19.00         3.02        19.00 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 
        3.98        12.00         1.94         4.04        22.98        10.06 
TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-8130 
        8.02        29.56        73.08        75.09        23.28        82.92 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8154 TCGA-85-7697 TCGA-85-8288 
      104.09        11.54        26.40        35.90         0.33         1.78 
TCGA-90-7766 TCGA-90-7964 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        1.55         3.29         2.86         0.16         4.70        39.88 
TCGA-96-8169 
        6.18 

$`9Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34        24.92        43.76         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 
       15.55        31.69       122.43         9.30        88.08        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        27.02        48.82        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
        0.56        38.17        34.75        13.12        32.02         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 
      173.79       103.53       141.34        14.07        10.98         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       61.61        31.50        28.96        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 
        9.04        10.82         7.73        14.07        22.95         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 
       27.35        35.64         0.79        17.88        18.08        13.12 
TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
        5.42         3.78        66.51         9.96         0.95         0.39 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7582 
        0.10         2.04         1.02         0.99         0.43         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        0.20         0.03        15.55        12.23        96.82        37.94 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2722 
       47.87        16.83        35.34        38.83         3.16        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 
       22.78        23.64        11.77        16.96        43.10         0.99 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        2.01         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2777 TCGA-66-2780 TCGA-66-2783 
        2.01         2.01        23.01         2.01        12.03        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       25.97        40.01        22.98         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 
        4.01        49.05         2.73         6.64         6.94         3.12 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       53.95        37.81        12.59        53.92        39.09        17.69 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 
       27.39         6.97         9.63        54.41         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        0.79         1.12         0.59         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-90-6837 
        0.46         1.18         0.43         0.36         1.45         1.35 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        2.27        58.42         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.16              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           119.80            173.79 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            10.22             14.07 
[1] "0.2 - 119.8 (10.2)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     20   64
  9Q LOSS WILD-TYPE   63  178
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              20                63
  MALE                64               178
D57V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                       1
  9Q LOSS WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                        1
  9Q LOSS WILD-TYPE                                      0
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q LOSS MUTATED                                        0
  9Q LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                         1
  9Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q LOSS MUTATED                                                            81
  9Q LOSS WILD-TYPE                                                         234
D57V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED    22  46  13   3
  9Q LOSS WILD-TYPE  56 150  20  15
D57V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              22                56
  T2              46               150
  T3              13                20
  T4               3                15
                   vv
clus                 N0  N1  N2  N3
  9Q LOSS MUTATED    51  25   5   2
  9Q LOSS WILD-TYPE 150  66  21   3
D57V7, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0              51               150
  N1              25                66
  N2               5                21
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9Q LOSS MUTATED    71   1  12
  9Q LOSS WILD-TYPE 214   3  18
D57V8, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              71               214
  M1               1                 3
  MX              12                18
                   vv
clus                  I  II III  IV
  9Q LOSS MUTATED    39  27  16   1
  9Q LOSS WILD-TYPE 126  63  46   3
D57V9, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                39               126
  II               27                63
  III              16                46
  IV                1                 3
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      3   81
  9Q LOSS WILD-TYPE    8  233
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                3                 8
  YES              81               233
D57V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q LOSS MUTATED                                            46
  9Q LOSS WILD-TYPE                                         112
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q LOSS MUTATED                                       19             15
  9Q LOSS WILD-TYPE                                     55             57
                   vv
clus                LIFELONG NON-SMOKER
  9Q LOSS MUTATED                     3
  9Q LOSS WILD-TYPE                  11
D57V12, multiclass
                                             clus
vv                                            9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              46               112
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   19                55
  CURRENT SMOKER                                           15                57
  LIFELONG NON-SMOKER                                       3                11
D57V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q LOSS MUTATED    61   1   2   3
  9Q LOSS WILD-TYPE 192   5   2  13
D57V14, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  R0              61               192
  R1               1                 5
  R2               2                 2
  RX               3                13

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    46  20
  10P LOSS WILD-TYPE 142 100
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                66                242 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                20                100 
$`10P LOSS MUTATED`
TCGA-18-3411 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 
       46.52        43.76         6.15         3.02        27.16        99.16 
TCGA-21-1075 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5786 TCGA-22-1016 
       70.13        31.69       122.43       119.80        21.57        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4609 TCGA-22-4613 TCGA-22-5477 
       20.45        35.08        38.17         9.53        11.77        44.22 
TCGA-22-5483 TCGA-33-4538 TCGA-37-3789 TCGA-37-4135 TCGA-37-5819 TCGA-39-5027 
       18.84        97.94         0.43         6.81         3.39        60.76 
TCGA-43-2578 TCGA-43-6143 TCGA-43-6770 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       18.08         7.00         2.79         0.39         2.07        17.79 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-60-2710 TCGA-60-2719 
        0.99         1.32         0.85         0.20        55.40        30.61 
TCGA-66-2727 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 
       16.96         2.01         0.99        20.98        25.02        23.01 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2800 
       25.97        40.01         4.04         5.03        10.06        49.05 
TCGA-68-8250 TCGA-77-6845 TCGA-77-7138 TCGA-77-8009 TCGA-77-8140 TCGA-77-8144 
        8.02        23.28        11.18        53.95        11.54        27.39 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 
        1.12         0.59         0.03         1.25         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-94-7033 TCGA-96-8170 TCGA-98-8021 
        1.41         0.46         0.36         2.86         6.90        13.58 

$`10P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4086 
       13.02        59.51        28.34        24.92         1.61         2.79 
TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       90.51       115.59        46.88        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 
        9.30         8.78        31.63        88.08        29.85        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 
       14.10        48.82        48.33        24.13         0.56        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        32.02        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         1.08         3.95         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.46         7.82         0.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.28        13.12        11.57        18.84         8.48        18.05 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        6.02         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.85        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 
        2.04         1.02         0.99         0.43         1.45         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 
       82.19        21.70        68.45        49.48        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       47.87        16.83        35.34        38.83         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       24.10        22.78         1.22        23.64        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 
       12.00        24.95         1.94        22.98        22.98        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 
       54.08         4.01         2.73         6.64         6.94         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       29.56        73.08        75.09        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
        6.51        86.76        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       39.09        17.69       104.09        26.40         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 
       54.41        35.90         0.33         0.36         0.79         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8072 TCGA-85-8276 
        1.61         1.15         0.85         1.97         1.18         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-98-7454 
        0.16         4.70        39.88        58.42         6.18         3.78 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.03               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            122.43             173.79 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            11.655             13.595 
[1] "0.0 - 122.4 (11.7)" "0.0 - 173.8 (13.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
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        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     14   57
  10P LOSS WILD-TYPE   69  185
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               14                 69
  MALE                 57                185
D58V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                       2
  10P LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                        1
  10P LOSS WILD-TYPE                                      0
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P LOSS MUTATED                                        0
  10P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                         0
  10P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P LOSS MUTATED                                                            68
  10P LOSS WILD-TYPE                                                         247
D58V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P LOSS MUTATED    18  40   8   5
  10P LOSS WILD-TYPE  60 156  25  13
D58V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1               18                 60
  T2               40                156
  T3                8                 25
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  10P LOSS MUTATED    48  15   6   2
  10P LOSS WILD-TYPE 153  76  20   3
D58V7, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               48                153
  N1               15                 76
  N2                6                 20
  N3                2                  3
                    vv
clus                  M0  M1  MX
  10P LOSS MUTATED    65   0   4
  10P LOSS WILD-TYPE 220   4  26
D58V8, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               65                220
  M1                0                  4
  MX                4                 26
                    vv
clus                   I  II III  IV
  10P LOSS MUTATED    37  16  18   0
  10P LOSS WILD-TYPE 128  74  44   4
D58V9, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                 37                128
  II                16                 74
  III               18                 44
  IV                 0                  4
D58V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      0   71
  10P LOSS WILD-TYPE   11  243
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 0                 11
  YES               71                243
D58V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P LOSS MUTATED                                            30
  10P LOSS WILD-TYPE                                         128
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P LOSS MUTATED                                       16             20
  10P LOSS WILD-TYPE                                     58             52
                    vv
clus                 LIFELONG NON-SMOKER
  10P LOSS MUTATED                     4
  10P LOSS WILD-TYPE                  10
D58V12, multiclass
                                             clus
vv                                            10P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               30
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    16
  CURRENT SMOKER                                            20
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            10P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                128
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      58
  CURRENT SMOKER                                              52
  LIFELONG NON-SMOKER                                         10
D58V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10P LOSS MUTATED    59   2   0   5
  10P LOSS WILD-TYPE 194   4   4  11
D58V14, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  R0               59                194
  R1                2                  4
  R2                0                  4
  RX                5                 11

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    46  19
  10Q LOSS WILD-TYPE 142 101
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                65                243 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                19                101 
$`10Q LOSS MUTATED`
TCGA-18-3411 TCGA-18-4083 TCGA-18-5592 TCGA-21-1072 TCGA-21-1075 TCGA-21-1082 
       46.52         6.15         3.02        99.16        70.13       119.80 
TCGA-21-5783 TCGA-22-0944 TCGA-22-4593 TCGA-22-4599 TCGA-22-4609 TCGA-22-5477 
       88.08         7.33        35.08        38.17         9.53        44.22 
TCGA-22-5483 TCGA-33-4538 TCGA-34-5927 TCGA-34-5929 TCGA-37-4135 TCGA-37-5819 
       18.84        97.94        22.95         4.96         6.81         3.39 
TCGA-39-5027 TCGA-39-5036 TCGA-43-2578 TCGA-43-3394 TCGA-43-6770 TCGA-43-7658 
       60.76        35.64        18.08        11.57         2.79        66.51 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-56-1622 TCGA-56-7221 
        0.39         0.39         2.07        17.79        28.93         0.99 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-60-2710 TCGA-60-2719 
        0.99         1.32         0.85         0.20        55.40        30.61 
TCGA-66-2727 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 
       16.96         2.01         0.99        20.98        25.02        23.01 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
        1.94        25.97        40.01         4.04        30.02        10.06 
TCGA-66-2800 TCGA-77-7138 TCGA-77-8009 TCGA-77-8140 TCGA-77-8143 TCGA-77-8148 
       49.05        11.18        53.95        11.54        26.40         9.63 
TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 
        1.12         1.61         0.03         1.25         1.97         0.53 
TCGA-85-8070 TCGA-85-8277 TCGA-94-7033 TCGA-96-8170 TCGA-98-8021 
        1.41         0.36         2.86         6.90        13.58 

$`10Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 
       34.78        15.55        31.69       122.43         9.30         8.78 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 
       31.63        29.85        21.57        10.82        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 
       20.45        48.33        24.13         0.56        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 
        9.04        10.82         7.73        14.07         5.52         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         0.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       36.39        15.58         0.79        17.88        18.28        13.12 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 
       18.84         8.48        18.05         7.00         6.02         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        3.78         6.97         1.58         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.95         0.59         5.85        30.31         8.75        27.45 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 
        0.10         2.04         1.02         0.43         1.45         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 
       82.19        21.70        68.45        49.48        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       47.87        16.83        35.34        38.83         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       24.10        22.78         1.22        23.64        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
       12.00        24.95        22.98        22.98         5.03        54.08 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
        4.01         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 
       29.56        73.08        75.09        23.28        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       15.75         6.51        86.76        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 TCGA-77-8145 
       53.92        39.09        17.69       104.09        27.39         6.97 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
       54.41        35.90         0.33         0.36         0.79         0.59 
TCGA-85-7697 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 
        0.33         1.15         0.85         1.97         0.46         1.18 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.43         1.45         1.78         1.35         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        0.59         3.29         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.27         0.16         4.70        39.88        58.42         6.18 
TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        3.78         7.33        10.13 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.03               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            119.80             173.79 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             11.18              14.07 
[1] "0.0 - 119.8 (11.2)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
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        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     17   53
  10Q LOSS WILD-TYPE   66  189
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               17                 66
  MALE                 53                189
D59V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                       1
  10Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                        1
  10Q LOSS WILD-TYPE                                      0
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q LOSS MUTATED                                        0
  10Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                         0
  10Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q LOSS MUTATED                                                            68
  10Q LOSS WILD-TYPE                                                         247
D59V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS MUTATED    18  41   7   4
  10Q LOSS WILD-TYPE  60 155  26  14
D59V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1               18                 60
  T2               41                155
  T3                7                 26
  T4                4                 14
                    vv
clus                  N0  N1  N2  N3
  10Q LOSS MUTATED    46  17   6   1
  10Q LOSS WILD-TYPE 155  74  20   4
D59V7, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0               46                155
  N1               17                 74
  N2                6                 20
  N3                1                  4
                    vv
clus                  M0  M1  MX
  10Q LOSS MUTATED    64   0   3
  10Q LOSS WILD-TYPE 221   4  27
D59V8, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               64                221
  M1                0                  4
  MX                3                 27
                    vv
clus                   I  II III  IV
  10Q LOSS MUTATED    37  15  17   0
  10Q LOSS WILD-TYPE 128  75  45   4
D59V9, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                 37                128
  II                15                 75
  III               17                 45
  IV                 0                  4
D59V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      0   70
  10Q LOSS WILD-TYPE   11  244
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 0                 11
  YES               70                244
D59V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q LOSS MUTATED                                            31
  10Q LOSS WILD-TYPE                                         127
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q LOSS MUTATED                                       17             18
  10Q LOSS WILD-TYPE                                     57             54
                    vv
clus                 LIFELONG NON-SMOKER
  10Q LOSS MUTATED                     2
  10Q LOSS WILD-TYPE                  12
D59V12, multiclass
                                             clus
vv                                            10Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               31
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    17
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            10Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                127
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      57
  CURRENT SMOKER                                              54
  LIFELONG NON-SMOKER                                         12
D59V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q LOSS MUTATED    58   0   0   4
  10Q LOSS WILD-TYPE 195   6   4  12
D59V14, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  R0               58                195
  R1                0                  6
  R2                0                  4
  RX                4                 12

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    29  18
  11P LOSS WILD-TYPE 159 102
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                261 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                18                102 
$`11P LOSS MUTATED`
TCGA-18-3421 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 
       43.76       122.43       119.80         8.78        31.63        21.57 
TCGA-22-4593 TCGA-22-5471 TCGA-22-5477 TCGA-22-5481 TCGA-22-5483 TCGA-33-4538 
       35.08        31.69        44.22        79.20        18.84        97.94 
TCGA-33-4547 TCGA-33-4587 TCGA-33-6737 TCGA-34-2600 TCGA-34-5928 TCGA-34-5929 
       43.10        54.44        19.76        61.61         5.52         4.96 
TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5035 TCGA-43-6143 TCGA-43-7657 
        8.09         6.81         0.39        15.58         7.00         1.58 
TCGA-46-3768 TCGA-56-7579 TCGA-56-7580 TCGA-60-2714 TCGA-60-2721 TCGA-66-2758 
        9.96         1.45         1.32        16.83        26.07        20.98 
TCGA-66-2759 TCGA-66-2768 TCGA-66-2771 TCGA-66-2780 TCGA-66-2782 TCGA-77-6844 
       25.02         2.01        19.00        12.03        12.00        75.09 
TCGA-77-7139 TCGA-77-7141 TCGA-77-8009 TCGA-77-8133 TCGA-77-8140 TCGA-77-8148 
       89.95         0.49        53.95        53.92        11.54         9.63 
TCGA-77-8150 TCGA-85-7699 TCGA-85-7843 TCGA-85-8277 TCGA-85-8288 
       54.41         0.03         1.15         0.36         1.78 

$`11P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 
       31.69         9.30        88.08        29.85        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       11.77        64.90        63.52        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       82.98       114.05       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       10.98        26.99         2.63        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 
        0.39         6.54         7.46         7.82         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 
        1.71        24.33         1.94        27.35        36.39        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48        18.05         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 
        3.78         6.97        66.51         6.64         6.35         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 
        1.02         0.99         0.43         0.99         0.85         0.20 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.03        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       29.19         9.01        47.87        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         7.07        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       19.00         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 
        8.02         3.12        29.56        73.08        23.28        11.18 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       20.78        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       15.75         6.51        86.76        37.81        82.92        12.59 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       39.09        17.69       104.09        26.40        27.39         6.97 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.53         1.41         0.46         1.18         0.43         1.45 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.35         1.55         2.93         0.59         3.29         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.03               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            122.43             173.79 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             18.84              12.59 
[1] "0.0 - 122.4 (18.8)" "0.0 - 173.8 (12.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   36
  11P LOSS WILD-TYPE   72  206
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               11                 72
  MALE                 36                206
D60V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                       1
  11P LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                        0
  11P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P LOSS MUTATED                                        0
  11P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                         1
  11P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P LOSS MUTATED                                                            45
  11P LOSS WILD-TYPE                                                         270
D60V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P LOSS MUTATED    10  30   6   1
  11P LOSS WILD-TYPE  68 166  27  17
D60V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1               10                 68
  T2               30                166
  T3                6                 27
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  11P LOSS MUTATED    26  18   3   0
  11P LOSS WILD-TYPE 175  73  23   5
D60V7, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               26                175
  N1               18                 73
  N2                3                 23
  N3                0                  5
                    vv
clus                  M0  M1  MX
  11P LOSS MUTATED    45   0   2
  11P LOSS WILD-TYPE 240   4  28
D60V8, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               45                240
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  11P LOSS MUTATED    22  15  10   0
  11P LOSS WILD-TYPE 143  75  52   4
D60V9, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                 22                143
  II                15                 75
  III               10                 52
  IV                 0                  4
D60V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      3   44
  11P LOSS WILD-TYPE    8  270
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 3                  8
  YES               44                270
D60V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P LOSS MUTATED                                            26
  11P LOSS WILD-TYPE                                         132
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P LOSS MUTATED                                        9              8
  11P LOSS WILD-TYPE                                     65             64
                    vv
clus                 LIFELONG NON-SMOKER
  11P LOSS MUTATED                     3
  11P LOSS WILD-TYPE                  11
D60V12, multiclass
                                             clus
vv                                            11P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               26
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            11P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                132
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      65
  CURRENT SMOKER                                              64
  LIFELONG NON-SMOKER                                         11
D60V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11P LOSS MUTATED    40   0   1   2
  11P LOSS WILD-TYPE 213   6   3  14
D60V14, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  R0               40                213
  R1                0                  6
  R2                1                  3
  RX                2                 14

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    19   9
  11Q LOSS WILD-TYPE 169 111
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                28                280 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 9                111 
$`11Q LOSS MUTATED`
TCGA-18-3421 TCGA-21-1083 TCGA-21-5783 TCGA-22-4593 TCGA-34-2600 TCGA-34-5928 
       43.76         8.78        88.08        35.08        61.61         5.52 
TCGA-37-4130 TCGA-43-7657 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        8.09         1.58         6.35         9.96         0.59         0.39 
TCGA-56-7223 TCGA-56-7580 TCGA-66-2758 TCGA-66-2768 TCGA-66-2790 TCGA-77-7139 
        0.99         1.32        20.98         2.01        22.98        89.95 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8133 TCGA-77-8143 TCGA-77-8148 TCGA-77-8150 
       53.95        82.92        53.92        26.40         9.63        54.41 
TCGA-85-6798 TCGA-85-7699 TCGA-85-8277 TCGA-90-7766 
        1.12         0.03         0.36         1.55 

$`11Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 
       31.69       122.43         9.30       119.80        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.08        13.12        11.57        18.84         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-46-6025 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       66.51         6.64         0.95         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.85        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 
        2.04         1.02         0.99         0.43         1.45         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.20         0.03        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       11.18        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
        0.16        46.78        15.75         6.51        86.76        37.81 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       12.59        39.09        17.69       104.09        11.54        27.39 
TCGA-77-8145 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
        6.97        35.90         0.33         0.36         0.79         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        1.45         1.78         1.35         2.93         0.59         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.03               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             89.95             173.79 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             9.205             13.825 
[1] "0.0 - 90.0 (9.2)"   "0.0 - 173.8 (13.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      5   23
  11Q LOSS WILD-TYPE   78  219
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                5                 78
  MALE                 23                219
D61V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                       0
  11Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                        0
  11Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q LOSS MUTATED                                        0
  11Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                         0
  11Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q LOSS MUTATED                                                            28
  11Q LOSS WILD-TYPE                                                         287
D61V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q LOSS MUTATED     7  15   5   1
  11Q LOSS WILD-TYPE  71 181  28  17
D61V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                7                 71
  T2               15                181
  T3                5                 28
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  11Q LOSS MUTATED    13  14   1   0
  11Q LOSS WILD-TYPE 188  77  25   5
D61V7, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               13                188
  N1               14                 77
  N2                1                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  11Q LOSS MUTATED    24   0   3
  11Q LOSS WILD-TYPE 261   4  27
D61V8, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               24                261
  M1                0                  4
  MX                3                 27
                    vv
clus                   I  II III  IV
  11Q LOSS MUTATED    11  10   7   0
  11Q LOSS WILD-TYPE 154  80  55   4
D61V9, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                 11                154
  II                10                 80
  III                7                 55
  IV                 0                  4
D61V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      2   26
  11Q LOSS WILD-TYPE    9  288
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 2                  9
  YES               26                288
D61V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q LOSS MUTATED                                            13
  11Q LOSS WILD-TYPE                                         145
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q LOSS MUTATED                                        7              6
  11Q LOSS WILD-TYPE                                     67             66
                    vv
clus                 LIFELONG NON-SMOKER
  11Q LOSS MUTATED                     2
  11Q LOSS WILD-TYPE                  12
D61V12, multiclass
                                             clus
vv                                            11Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               13
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            11Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                145
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      67
  CURRENT SMOKER                                              66
  LIFELONG NON-SMOKER                                         12
D61V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q LOSS MUTATED    23   0   1   0
  11Q LOSS WILD-TYPE 230   6   3  16
D61V14, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  R0               23                230
  R1                0                  6
  R2                1                  3
  RX                0                 16

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED     2   2
  12P LOSS WILD-TYPE 186 118
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 4                304 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                118 
$`12P LOSS MUTATED`
TCGA-22-1016 TCGA-33-4587 TCGA-37-4141 TCGA-56-7579 
       27.02        54.44         0.39         1.45 

$`12P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         7.82         6.81         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39         2.07        17.79         5.85        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.32         0.85         0.20         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.09       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        1.78         1.35         1.55         2.93         0.59         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.39               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             54.44             173.79 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            14.235             13.120 
[1] "0.4 - 54.4 (14.2)"  "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2    2
  12P LOSS WILD-TYPE   81  240
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                2                 81
  MALE                  2                240
D62V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                       0
  12P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                        0
  12P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P LOSS MUTATED                                        0
  12P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                         1
  12P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P LOSS MUTATED                                                             3
  12P LOSS WILD-TYPE                                                         312
D62V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED     1   2   1   0
  12P LOSS WILD-TYPE  77 194  32  18
D62V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                1                 77
  T2                2                194
  T3                1                 32
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED     3   1   0   0
  12P LOSS WILD-TYPE 198  90  26   5
D62V7, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                3                198
  N1                1                 90
  N2                0                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12P LOSS MUTATED     3   0   1
  12P LOSS WILD-TYPE 282   4  29
D62V8, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                3                282
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  12P LOSS MUTATED     3   0   1   0
  12P LOSS WILD-TYPE 162  90  61   4
D62V9, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                  3                162
  II                 0                 90
  III                1                 61
  IV                 0                  4
D62V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0    4
  12P LOSS WILD-TYPE   11  310
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                 11
  YES                4                310
D62V11, continuous
[1] "Remove cluster labels:" "12P LOSS MUTATED"      
clus
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                272 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3411         TCGA-18-3412 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3415         TCGA-18-3416 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3417         TCGA-18-3419         TCGA-18-3421 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4083         TCGA-18-4086         TCGA-18-5592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1075 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1076         TCGA-21-1077         TCGA-21-1078 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1083         TCGA-21-5782         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5479         TCGA-22-5480 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5481         TCGA-22-5482         TCGA-22-5483 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5485         TCGA-22-5489         TCGA-22-5491 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5492         TCGA-33-4532         TCGA-33-4533 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5240         TCGA-34-5241 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-37-4129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4133         TCGA-37-4135 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2576 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-7656         TCGA-43-7657 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7658         TCGA-43-8115         TCGA-43-8116 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4081         TCGA-52-7622 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-7221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7822         TCGA-60-2695 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2703         TCGA-60-2704 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2706         TCGA-60-2707         TCGA-60-2708 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2709         TCGA-60-2710         TCGA-60-2711 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-5131         TCGA-63-6202         TCGA-63-7020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-7021         TCGA-63-7022         TCGA-63-7023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2769         TCGA-66-2770         TCGA-66-2771 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2790         TCGA-66-2791         TCGA-66-2792 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2793         TCGA-66-2794         TCGA-66-2795 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2800         TCGA-68-7755         TCGA-68-7756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7757         TCGA-68-8250         TCGA-68-8251 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6842         TCGA-77-6843         TCGA-77-6844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6845         TCGA-77-7138         TCGA-77-7139 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8154 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-79-5596         TCGA-85-6560 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6561         TCGA-85-6798         TCGA-85-7696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7697         TCGA-85-7698         TCGA-85-7699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7710         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8052 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8276         TCGA-85-8287         TCGA-85-8288 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-90-7964         TCGA-92-7340 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7943 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P LOSS MUTATED                                             2
  12P LOSS WILD-TYPE                                         156
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P LOSS MUTATED                                        1              0
  12P LOSS WILD-TYPE                                     73             72
                    vv
clus                 LIFELONG NON-SMOKER
  12P LOSS MUTATED                     1
  12P LOSS WILD-TYPE                  13
D62V12, multiclass
                                             clus
vv                                            12P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             0
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            12P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                156
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      73
  CURRENT SMOKER                                              72
  LIFELONG NON-SMOKER                                         13
D62V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12P LOSS MUTATED     4   0   0   0
  12P LOSS WILD-TYPE 249   6   4  16
D62V14, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  R0                4                249
  R1                0                  6
  R2                0                  4
  RX                0                 16

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     2   1
  12Q LOSS WILD-TYPE 186 119
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 3                305 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                119 
$`12Q LOSS MUTATED`
TCGA-33-4587 TCGA-37-4141 TCGA-85-7696 
       54.44         0.39         0.59 

$`12Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        6.54         8.09         7.46         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.20         0.03        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
        0.33         0.36         0.79         1.12         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.03         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        58.42         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78        13.58         7.33        10.13 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.39               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             54.44             173.79 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.59              13.12 
[1] "0.4 - 54.4 (0.6)"   "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2    2
  12Q LOSS WILD-TYPE   81  240
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                2                 81
  MALE                  2                240
D63V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                       0
  12Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                        0
  12Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q LOSS MUTATED                                        0
  12Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                         1
  12Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q LOSS MUTATED                                                             3
  12Q LOSS WILD-TYPE                                                         312
D63V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED     3   1   0   0
  12Q LOSS WILD-TYPE  75 195  33  18
D63V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                3                 75
  T2                1                195
  T3                0                 33
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED     4   0   0   0
  12Q LOSS WILD-TYPE 197  91  26   5
D63V7, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                4                197
  N1                0                 91
  N2                0                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12Q LOSS MUTATED     3   0   1
  12Q LOSS WILD-TYPE 282   4  29
D63V8, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                3                282
  M1                0                  4
  MX                1                 29
                    vv
clus                   I  II III  IV
  12Q LOSS MUTATED     4   0   0   0
  12Q LOSS WILD-TYPE 161  90  62   4
D63V9, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                  4                161
  II                 0                 90
  III                0                 62
  IV                 0                  4
D63V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0    4
  12Q LOSS WILD-TYPE   11  310
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                 11
  YES                4                310
D63V11, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                273 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3411         TCGA-18-3412 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3415         TCGA-18-3416 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3417         TCGA-18-3419         TCGA-18-3421 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4083         TCGA-18-4086         TCGA-18-5592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1075 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1076         TCGA-21-1077         TCGA-21-1078 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1083         TCGA-21-5782         TCGA-21-5784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-4593         TCGA-22-4594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4589         TCGA-33-6737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5240 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5928         TCGA-34-5929 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4133 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-5819         TCGA-39-5011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-7656 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-51-4079         TCGA-51-4081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7221         TCGA-56-7222         TCGA-56-7579 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-63-5131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-63-6202         TCGA-63-7020         TCGA-63-7021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-63-7022         TCGA-63-7023         TCGA-66-2727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2757         TCGA-66-2758 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2759         TCGA-66-2763         TCGA-66-2765 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2766         TCGA-66-2767         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-79-5596         TCGA-85-6560         TCGA-85-6561 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6798         TCGA-85-7697         TCGA-85-7698 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7710         TCGA-85-7843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7844         TCGA-85-7950         TCGA-85-8048 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8287 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8288         TCGA-90-6837         TCGA-90-7766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-7340         TCGA-92-7341         TCGA-92-8063 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8064         TCGA-92-8065         TCGA-94-7033 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q LOSS MUTATED                                             1
  12Q LOSS WILD-TYPE                                         157
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q LOSS MUTATED                                        1              1
  12Q LOSS WILD-TYPE                                     73             71
                    vv
clus                 LIFELONG NON-SMOKER
  12Q LOSS MUTATED                     1
  12Q LOSS WILD-TYPE                  13
D63V12, multiclass
                                             clus
vv                                            12Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            12Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                157
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      73
  CURRENT SMOKER                                              71
  LIFELONG NON-SMOKER                                         13
D63V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q LOSS MUTATED     4   0   0   0
  12Q LOSS WILD-TYPE 249   6   4  16
D63V14, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  R0                4                249
  R1                0                  6
  R2                0                  4
  RX                0                 16

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    75  43
  13Q LOSS WILD-TYPE 113  77
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               118                190 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                 77 
$`13Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
        4.80        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1080 
       90.51       115.59        46.88        99.16        70.13       122.43 
TCGA-21-5787 TCGA-22-0940 TCGA-22-4591 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       10.82        19.99        20.45        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5477 TCGA-22-5478 TCGA-22-5481 TCGA-22-5482 
       11.77        64.90        44.22         0.79        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4582 
       18.84        30.08        56.32        16.60        97.94       103.53 
TCGA-33-4587 TCGA-33-6737 TCGA-34-2600 TCGA-34-2609 TCGA-34-5231 TCGA-34-5928 
       54.44        19.76        61.61        31.23        50.24         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        4.96         1.08         7.82         6.81         3.39        74.07 
TCGA-39-5029 TCGA-39-5036 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       24.33        35.64        18.08        13.12        11.57        18.84 
TCGA-43-6770 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-51-4079 
        2.79         6.97        66.51         6.64         6.35         0.39 
TCGA-52-7812 TCGA-56-1622 TCGA-56-7222 TCGA-56-7579 TCGA-56-7730 TCGA-60-2696 
       27.45        28.93         0.43         1.45         0.20         3.58 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       82.19        68.45        55.40        29.19        47.87        16.83 
TCGA-60-2719 TCGA-60-2722 TCGA-60-2724 TCGA-66-2727 TCGA-66-2754 TCGA-66-2756 
       30.61        24.10         1.22        16.96         2.01         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 
       25.02         0.99         2.01        19.00        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2790 TCGA-66-2792 
       12.00        24.95         1.94        25.97        22.98        30.02 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-77-6842 TCGA-77-6844 
       49.05         2.73         6.64         8.02        29.56        75.09 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-8009 TCGA-77-8128 
       89.95        20.78        70.09       106.95        53.95        37.81 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8150 TCGA-77-8154 
       82.92       104.09        26.40        27.39        54.41        35.90 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-7950 TCGA-85-8070 TCGA-85-8071 
        0.33         1.61         1.25         1.97         1.41         0.46 
TCGA-85-8277 TCGA-85-8288 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-8063 
        0.36         1.78         1.55         2.93         3.29         4.01 
TCGA-96-7544 TCGA-96-8169 TCGA-98-8021 TCGA-98-8022 
       39.88         6.18        13.58         7.33 

$`13Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1076 
       13.02        24.92         2.79         3.02        27.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       34.78        15.55        31.69         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1000 
       31.63        88.08        29.85        21.57         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4605 
       35.08        48.33        24.13         0.56        38.17        32.02 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
        9.53        31.69        63.52        14.60        54.28        71.34 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 
       62.86        82.98       114.05        43.10       173.79       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 
       14.07        10.98        26.99         2.63        31.50        28.96 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       32.84        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07        22.95         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        8.09         7.46         0.39        47.80        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76         1.71         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-5668 
       36.39        15.58         0.79        17.88        18.28         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 
       18.05         7.00         6.02         5.42         3.78         1.58 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        9.96         0.95         0.59         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        5.85        30.31         8.75         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-60-2695 
        0.99         0.99         1.32         0.85         0.03        15.55 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 
       12.23        10.22        96.82        37.94        21.70        49.48 
TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
        9.01        35.34        38.83         3.16        26.07        22.78 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 
        1.02         0.92         0.99        20.98         2.01         1.02 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2781 
        2.01         7.07        23.01         3.02         2.01         3.98 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2795 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 
        4.01         6.94         3.12        73.08        23.28        11.18 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
        0.49        42.25         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 
       86.76        12.59        53.92        39.09        17.69        11.54 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        6.97         9.63         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.59         0.03         1.15         0.85         1.97         0.53 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 
        1.18         0.43         1.45         1.35         0.59         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        3.48         5.26         2.27         2.86         0.16         4.70 
TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8023 
       58.42         6.90         3.78        10.13 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.20               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            122.43             173.79 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             19.15              10.52 
[1] "0.2 - 122.4 (19.1)" "0.0 - 173.8 (10.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
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  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     33   89
  13Q LOSS WILD-TYPE   50  153
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               33                 50
  MALE                 89                153
D64V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                       1
  13Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                        0
  13Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q LOSS MUTATED                                        0
  13Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                         1
  13Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q LOSS MUTATED                                                           120
  13Q LOSS WILD-TYPE                                                         195
D64V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q LOSS MUTATED    29  75  11   7
  13Q LOSS WILD-TYPE  49 121  22  11
D64V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               29                 49
  T2               75                121
  T3               11                 22
  T4                7                 11
                    vv
clus                  N0  N1  N2  N3
  13Q LOSS MUTATED    67  39  14   2
  13Q LOSS WILD-TYPE 134  52  12   3
D64V7, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               67                134
  N1               39                 52
  N2               14                 12
  N3                2                  3
                    vv
clus                  M0  M1  MX
  13Q LOSS MUTATED   109   0  11
  13Q LOSS WILD-TYPE 176   4  19
D64V8, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0              109                176
  M1                0                  4
  MX               11                 19
                    vv
clus                   I  II III  IV
  13Q LOSS MUTATED    51  41  29   0
  13Q LOSS WILD-TYPE 114  49  33   4
D64V9, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                 51                114
  II                41                 49
  III               29                 33
  IV                 0                  4
D64V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      5  117
  13Q LOSS WILD-TYPE    6  197
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 5                  6
  YES              117                197
D64V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q LOSS MUTATED                                            65
  13Q LOSS WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q LOSS MUTATED                                       22             31
  13Q LOSS WILD-TYPE                                     52             41
                    vv
clus                 LIFELONG NON-SMOKER
  13Q LOSS MUTATED                     4
  13Q LOSS WILD-TYPE                  10
D64V12, multiclass
                                             clus
vv                                            13Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               65
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    22
  CURRENT SMOKER                                            31
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            13Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              41
  LIFELONG NON-SMOKER                                         10
D64V13, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q LOSS MUTATED    94   1   2   5
  13Q LOSS WILD-TYPE 159   5   2  11
D64V14, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  R0               94                159
  R1                1                  5
  R2                2                  2
  RX                5                 11

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    34  24
  14Q LOSS WILD-TYPE 154  96
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                58                250 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                24                 96 
$`14Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-4083 TCGA-21-1083 TCGA-22-0940 TCGA-22-1012 TCGA-22-4601 
        4.80         6.15         8.78        19.99        14.10        34.75 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       63.52        14.60        44.22        71.34        79.20        18.84 
TCGA-22-5491 TCGA-33-4587 TCGA-34-2600 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       56.32        54.44        61.61        22.95         5.52         4.96 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-39-5035 TCGA-43-3394 TCGA-43-6770 
        8.09         7.82         6.81        15.58        11.57         2.79 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 
        6.97         1.58        66.51         6.35         9.96         0.59 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-66-2727 TCGA-66-2754 TCGA-66-2755 
       55.40         9.01        47.87        16.96         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2770 TCGA-66-2773 TCGA-66-2786 TCGA-66-2795 
        0.99        20.98        23.01         3.02        25.97         4.01 
TCGA-68-8250 TCGA-77-6843 TCGA-77-7139 TCGA-77-7338 TCGA-77-8009 TCGA-77-8140 
        8.02        73.08        89.95         0.16        53.95        11.54 
TCGA-85-6798 TCGA-85-7950 TCGA-85-8070 TCGA-85-8277 TCGA-85-8288 TCGA-90-7766 
        1.12         1.97         1.41         0.36         1.78         1.55 
TCGA-90-7767 TCGA-94-7557 TCGA-94-7943 TCGA-98-8021 
        2.93         0.16         4.70        13.58 

$`14Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       21.57        10.82         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
        1.74        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 TCGA-22-5479 
        9.53        11.77        31.69        64.90         0.79        54.28 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        62.86        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76        26.99         2.63        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       10.82         7.73        14.07         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        0.39         6.54         7.46         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 
        1.71        24.33         1.94        27.35        36.39        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
        0.79        17.88        18.28        18.08        13.12        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         7.00         6.02         5.42         3.78 
TCGA-43-8115 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        6.64         0.95         0.39         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.85        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        1.32         0.85         0.20         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       68.45        49.48        29.19        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        1.02         0.99        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01         7.07        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 
       54.08        49.05         2.73         6.64         6.94         3.12 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       29.56        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09       106.95        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       86.76        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       17.69       104.09        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
       54.41        35.90         0.33         0.36         0.79         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        1.97         0.53         0.46         1.18         0.43         1.45 
TCGA-90-6837 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.35         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        5.26         2.27         2.86        39.88        58.42         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78         7.33        10.13 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.16               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             89.95             173.79 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             8.895             15.240 
[1] "0.2 - 90.0 (8.9)"   "0.0 - 173.8 (15.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     21   39
  14Q LOSS WILD-TYPE   62  203
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               21                 62
  MALE                 39                203
D65V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                       0
  14Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                        0
  14Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q LOSS MUTATED                                        0
  14Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                         1
  14Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q LOSS MUTATED                                                            59
  14Q LOSS WILD-TYPE                                                         256
D65V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED    24  29   4   3
  14Q LOSS WILD-TYPE  54 167  29  15
D65V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1               24                 54
  T2               29                167
  T3                4                 29
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  14Q LOSS MUTATED    39  19   1   0
  14Q LOSS WILD-TYPE 162  72  25   5
D65V7, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               39                162
  N1               19                 72
  N2                1                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q LOSS MUTATED    52   0   8
  14Q LOSS WILD-TYPE 233   4  22
D65V8, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0               52                233
  M1                0                  4
  MX                8                 22
                    vv
clus                   I  II III  IV
  14Q LOSS MUTATED    36  16   8   0
  14Q LOSS WILD-TYPE 129  74  54   4
D65V9, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                 36                129
  II                16                 74
  III                8                 54
  IV                 0                  4
D65V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      3   57
  14Q LOSS WILD-TYPE    8  257
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 3                  8
  YES               57                257
D65V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q LOSS MUTATED                                            26
  14Q LOSS WILD-TYPE                                         132
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q LOSS MUTATED                                       15             17
  14Q LOSS WILD-TYPE                                     59             55
                    vv
clus                 LIFELONG NON-SMOKER
  14Q LOSS MUTATED                     1
  14Q LOSS WILD-TYPE                  13
D65V12, multiclass
                                             clus
vv                                            14Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               26
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    15
  CURRENT SMOKER                                            17
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            14Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                132
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      59
  CURRENT SMOKER                                              55
  LIFELONG NON-SMOKER                                         13
D65V13, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q LOSS MUTATED    44   1   1   2
  14Q LOSS WILD-TYPE 209   5   3  14
D65V14, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  R0               44                209
  R1                1                  5
  R2                1                  3
  RX                2                 14

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    21  16
  15Q LOSS WILD-TYPE 167 104
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                37                271 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                16                104 
$`15Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3416 TCGA-21-1072 TCGA-21-1080 TCGA-22-1012 TCGA-22-4591 
       12.16        28.34        99.16       122.43        14.10        20.45 
TCGA-22-4594 TCGA-22-4599 TCGA-22-5480 TCGA-33-4587 TCGA-34-2600 TCGA-34-5929 
       48.33        38.17        71.34        54.44        61.61         4.96 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5029 TCGA-39-5034 
        8.09         7.82         0.39         3.39        24.33        36.39 
TCGA-43-2578 TCGA-43-2581 TCGA-46-3768 TCGA-46-6026 TCGA-52-7810 TCGA-56-7223 
       18.08        13.12         9.96         0.59        30.31         0.99 
TCGA-60-2712 TCGA-60-2714 TCGA-66-2742 TCGA-66-2756 TCGA-66-2791 TCGA-66-2794 
        9.01        16.83        21.07         0.99         5.03        54.08 
TCGA-66-2800 TCGA-68-8250 TCGA-77-6842 TCGA-77-7337 TCGA-77-8130 TCGA-85-8288 
       49.05         8.02        29.56       106.95        82.92         1.78 
TCGA-92-8065 
        2.27 

$`15Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 
       70.13        60.89        34.78        15.55        31.69         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
        1.74        27.02        48.82        35.08        24.13         0.56 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       54.28        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 
      173.79       103.53       141.34        14.07        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-39-5011 TCGA-39-5016 
        0.39         6.54         7.46         6.81        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.28        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
       66.51         6.64         6.35         0.95         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        1.32         0.85         0.20         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 
       68.45        49.48        55.40        29.19        47.87        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04        22.98        30.02        10.06 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 
        4.01         2.73         6.64         6.94         3.12        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       86.76        53.95        37.81        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-90-6837 
        0.46         1.18         0.43         0.36         1.45         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        1.55         2.93         0.59         3.29         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        4.01         5.26         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.39               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            122.43             173.79 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             18.08              12.23 
[1] "0.4 - 122.4 (18.1)" "0.0 - 173.8 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     15   23
  15Q LOSS WILD-TYPE   68  219
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               15                 68
  MALE                 23                219
D66V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                       0
  15Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                        0
  15Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q LOSS MUTATED                                        0
  15Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                         1
  15Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q LOSS MUTATED                                                            37
  15Q LOSS WILD-TYPE                                                         278
D66V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED     9  17   8   4
  15Q LOSS WILD-TYPE  69 179  25  14
D66V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                9                 69
  T2               17                179
  T3                8                 25
  T4                4                 14
                    vv
clus                  N0  N1  N2  N3
  15Q LOSS MUTATED    19  13   5   1
  15Q LOSS WILD-TYPE 182  78  21   4
D66V7, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               19                182
  N1               13                 78
  N2                5                 21
  N3                1                  4
                    vv
clus                  M0  M1  MX
  15Q LOSS MUTATED    33   1   4
  15Q LOSS WILD-TYPE 252   3  26
D66V8, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               33                252
  M1                1                  3
  MX                4                 26
                    vv
clus                   I  II III  IV
  15Q LOSS MUTATED    13  12  12   1
  15Q LOSS WILD-TYPE 152  78  50   3
D66V9, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                 13                152
  II                12                 78
  III               12                 50
  IV                 1                  3
D66V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      1   37
  15Q LOSS WILD-TYPE   10  277
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 1                 10
  YES               37                277
D66V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q LOSS MUTATED                                            20
  15Q LOSS WILD-TYPE                                         138
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q LOSS MUTATED                                       13              4
  15Q LOSS WILD-TYPE                                     61             68
                    vv
clus                 LIFELONG NON-SMOKER
  15Q LOSS MUTATED                     1
  15Q LOSS WILD-TYPE                  13
D66V12, multiclass
                                             clus
vv                                            15Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               20
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    13
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            15Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                138
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      61
  CURRENT SMOKER                                              68
  LIFELONG NON-SMOKER                                         13
D66V13, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q LOSS MUTATED    32   1   1   1
  15Q LOSS WILD-TYPE 221   5   3  15
D66V14, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  R0               32                221
  R1                1                  5
  R2                1                  3
  RX                1                 15

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    33  14
  16P LOSS WILD-TYPE 155 106
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                47                261 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                14                106 
$`16P LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 
        4.80        59.51         6.15         3.02       115.59        70.13 
TCGA-21-5786 TCGA-22-1012 TCGA-22-4613 TCGA-22-5480 TCGA-22-5482 TCGA-33-4533 
       21.57        14.10        11.77        71.34        11.74       114.05 
TCGA-33-6737 TCGA-34-5927 TCGA-34-5928 TCGA-39-5021 TCGA-43-3394 TCGA-43-7656 
       19.76        22.95         5.52        68.58        11.57         6.97 
TCGA-43-7658 TCGA-43-8116 TCGA-52-7810 TCGA-60-2719 TCGA-60-2724 TCGA-66-2753 
       66.51         6.35        30.31        30.61         1.22         1.02 
TCGA-66-2755 TCGA-66-2758 TCGA-66-2781 TCGA-66-2785 TCGA-66-2792 TCGA-66-2793 
        0.92        20.98         3.98         1.94        30.02        10.06 
TCGA-66-2800 TCGA-77-6842 TCGA-77-7139 TCGA-77-7142 TCGA-77-7463 TCGA-77-8140 
       49.05        29.56        89.95        42.25        46.78        11.54 
TCGA-77-8143 TCGA-77-8154 TCGA-85-7699 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 
       26.40        35.90         0.03         1.97         0.53         1.41 
TCGA-85-8277 TCGA-90-7767 TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 
        0.36         2.93         0.16        39.88         6.18 

$`16P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       90.51        27.16        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       31.63        88.08        29.85        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31        64.21         1.74        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
       34.75        13.12        32.02        19.30         9.53        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       79.20        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       82.98        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        54.44        10.98        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5929 
       32.68         9.04        10.82         7.73        14.07         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
        0.79        17.88        18.28        18.08        13.12        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        3.78         1.58         6.64         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.03        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       16.96        43.10         2.01        21.07         0.99         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
        2.01        19.00        12.03        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
       40.01        22.98         4.04        22.98         5.03        54.08 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
        4.01         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
       70.09       106.95         0.16        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       17.69       104.09        27.39         6.97         9.63        54.41 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 
        1.61         1.15         1.25         0.85         1.97         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        1.18         0.43         1.45         1.78         1.35         1.55 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        0.59         3.29         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 
        2.27         2.86         4.70        58.42         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.03               0.03 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            115.59             173.79 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             11.77              13.12 
[1] "0.0 - 115.6 (11.8)" "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     13   35
  16P LOSS WILD-TYPE   70  207
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               13                 70
  MALE                 35                207
D67V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                       0
  16P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                        0
  16P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P LOSS MUTATED                                        0
  16P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                         0
  16P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P LOSS MUTATED                                                            48
  16P LOSS WILD-TYPE                                                         267
D67V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED     9  30   6   3
  16P LOSS WILD-TYPE  69 166  27  15
D67V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                9                 69
  T2               30                166
  T3                6                 27
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  16P LOSS MUTATED    34  12   2   0
  16P LOSS WILD-TYPE 167  79  24   5
D67V7, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               34                167
  N1               12                 79
  N2                2                 24
  N3                0                  5
                    vv
clus                  M0  M1  MX
  16P LOSS MUTATED    45   0   3
  16P LOSS WILD-TYPE 240   4  27
D67V8, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               45                240
  M1                0                  4
  MX                3                 27
                    vv
clus                   I  II III  IV
  16P LOSS MUTATED    27  12   9   0
  16P LOSS WILD-TYPE 138  78  53   4
D67V9, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                 27                138
  II                12                 78
  III                9                 53
  IV                 0                  4
D67V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      1   47
  16P LOSS WILD-TYPE   10  267
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 1                 10
  YES               47                267
D67V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P LOSS MUTATED                                            25
  16P LOSS WILD-TYPE                                         133
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P LOSS MUTATED                                       11             10
  16P LOSS WILD-TYPE                                     63             62
                    vv
clus                 LIFELONG NON-SMOKER
  16P LOSS MUTATED                     1
  16P LOSS WILD-TYPE                  13
D67V12, multiclass
                                             clus
vv                                            16P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               25
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    11
  CURRENT SMOKER                                            10
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            16P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                133
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      63
  CURRENT SMOKER                                              62
  LIFELONG NON-SMOKER                                         13
D67V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16P LOSS MUTATED    36   0   0   1
  16P LOSS WILD-TYPE 217   6   4  15
D67V14, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  R0               36                217
  R1                0                  6
  R2                0                  4
  RX                1                 15

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    39  18
  16Q LOSS WILD-TYPE 149 102
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                57                251 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                18                102 
$`16Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-5592 
        4.80        59.51        28.34         1.61         6.15         3.02 
TCGA-21-1070 TCGA-21-1075 TCGA-22-1012 TCGA-22-5473 TCGA-22-5480 TCGA-22-5481 
      115.59        70.13        14.10        63.52        71.34        79.20 
TCGA-22-5482 TCGA-22-5489 TCGA-33-4533 TCGA-33-6737 TCGA-34-5231 TCGA-34-5927 
       11.74        62.86       114.05        19.76        50.24        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-7658 
        5.52         4.96        18.08        11.57        18.84        66.51 
TCGA-43-8116 TCGA-46-6026 TCGA-56-7221 TCGA-56-7730 TCGA-60-2710 TCGA-60-2711 
        6.35         0.59         0.99         0.20        55.40        29.19 
TCGA-60-2713 TCGA-60-2719 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       47.87        30.61         1.02         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2778 TCGA-66-2782 TCGA-66-2789 TCGA-66-2792 
       25.02         0.99        19.00        12.00         4.04        30.02 
TCGA-66-2793 TCGA-66-2800 TCGA-77-6842 TCGA-77-7139 TCGA-77-7142 TCGA-77-7463 
       10.06        49.05        29.56        89.95        42.25        46.78 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8150 TCGA-85-7699 TCGA-85-7950 TCGA-85-8071 
       11.54        26.40        54.41         0.03         1.97         0.46 
TCGA-90-7767 TCGA-92-8065 TCGA-96-8169 
        2.93         2.27         6.18 

$`16Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       13.02        24.92        43.76         2.79        90.51        27.16 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
        4.31        64.21         1.74        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5483 
       64.90        14.60        44.22         0.79        54.28        18.84 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       30.08        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.23        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       15.58        35.64         0.79        17.88        18.28        13.12 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 
        3.78         6.97         1.58         6.64         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39         2.07        17.79         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        0.43         0.99         1.45         1.32         0.85         0.03 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2714 
       82.19        21.70        68.45        49.48         9.01        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        38.83         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2765 TCGA-66-2766 
       21.07         0.99         2.01         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
        2.01        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 
       40.01        22.98        22.98         5.03        54.08         4.01 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 
        2.73         6.64         6.94         8.02         3.12        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 
       75.09        23.28        11.18        20.78         0.49        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 
      104.09        27.39         6.97         9.63        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        5.26         2.86         0.16         4.70        39.88        58.42 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78        13.58         7.33        10.13 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.03               0.03 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            115.59             173.79 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             18.84              12.59 
[1] "0.0 - 115.6 (18.8)" "0.0 - 173.8 (12.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     20   40
  16Q LOSS WILD-TYPE   63  202
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               20                 63
  MALE                 40                202
D68V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                       0
  16Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                        0
  16Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q LOSS MUTATED                                        0
  16Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                         0
  16Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q LOSS MUTATED                                                            60
  16Q LOSS WILD-TYPE                                                         255
D68V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED    13  36   8   3
  16Q LOSS WILD-TYPE  65 160  25  15
D68V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               13                 65
  T2               36                160
  T3                8                 25
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  16Q LOSS MUTATED    37  18   3   2
  16Q LOSS WILD-TYPE 164  73  23   3
D68V7, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               37                164
  N1               18                 73
  N2                3                 23
  N3                2                  3
                    vv
clus                  M0  M1  MX
  16Q LOSS MUTATED    57   0   2
  16Q LOSS WILD-TYPE 228   4  28
D68V8, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               57                228
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  16Q LOSS MUTATED    28  18  13   0
  16Q LOSS WILD-TYPE 137  72  49   4
D68V9, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                 28                137
  II                18                 72
  III               13                 49
  IV                 0                  4
D68V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   57
  16Q LOSS WILD-TYPE    8  257
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 3                  8
  YES               57                257
D68V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q LOSS MUTATED                                            34
  16Q LOSS WILD-TYPE                                         124
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q LOSS MUTATED                                       15              9
  16Q LOSS WILD-TYPE                                     59             63
                    vv
clus                 LIFELONG NON-SMOKER
  16Q LOSS MUTATED                     1
  16Q LOSS WILD-TYPE                  13
D68V12, multiclass
                                             clus
vv                                            16Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               34
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    15
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            16Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                124
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      59
  CURRENT SMOKER                                              63
  LIFELONG NON-SMOKER                                         13
D68V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q LOSS MUTATED    44   0   2   2
  16Q LOSS WILD-TYPE 209   6   2  14
D68V14, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  R0               44                209
  R1                0                  6
  R2                2                  2
  RX                2                 14

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    69  41
  17P LOSS WILD-TYPE 119  79
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               110                198 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                41                 79 
$`17P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       12.16         4.47        46.52        13.02        59.51        28.34 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4721 TCGA-21-1080 TCGA-21-5782 TCGA-21-5783 
        1.61        43.76        90.51       122.43        31.63        88.08 
TCGA-21-5786 TCGA-22-0944 TCGA-22-4591 TCGA-22-4594 TCGA-22-4599 TCGA-22-4607 
       21.57         7.33        20.45        48.33        38.17        19.30 
TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 
        9.53        64.90        63.52        44.22        71.34        79.20 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 TCGA-33-4586 
       18.84        62.86        56.32        16.60        43.10        14.07 
TCGA-33-4587 TCGA-33-6738 TCGA-34-2600 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 
       54.44        26.99        61.61         3.95         0.43         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5034 TCGA-39-5035 TCGA-43-3394 
        0.39         3.39        74.07        36.39        15.58        11.57 
TCGA-43-6143 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 
        7.00         6.97        66.51         6.64         6.35         0.59 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-7223 
        0.39        17.79        30.31        27.45        28.93         0.99 
TCGA-56-7579 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2710 
        1.45         3.58        10.22        82.19        21.70        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2721 TCGA-60-2722 
       29.19         9.01        47.87        16.83        26.07        24.10 
TCGA-66-2727 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 
       16.96        21.07         1.02         2.01         0.99        25.02 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2780 TCGA-66-2783 
        0.99         1.02         2.01        19.00        12.03        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2795 TCGA-68-7757 
        1.94        25.97        22.98         4.04         4.01         6.94 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       75.09        23.28        89.95        70.09       106.95         0.16 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8133 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 
       53.95        82.92        53.92       104.09        11.54         6.97 
TCGA-77-8154 TCGA-85-7696 TCGA-85-8070 TCGA-85-8288 TCGA-90-7766 TCGA-90-7767 
       35.90         0.59         1.41         1.78         1.55         2.93 
TCGA-90-7964 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        3.29         3.48         4.01         2.27         2.86        39.88 
TCGA-96-8170 TCGA-98-8021 
        6.90        13.58 

$`17P LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-4083 
       81.07        79.46         4.80        11.34        24.92         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
        2.79         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 
       70.13        60.89        34.78        15.55        31.69         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 
      119.80         8.78        29.85        10.82        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       35.08        24.13         0.56        34.75        13.12        32.02 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 
       11.77        31.69        14.60         0.79        54.28        11.74 
TCGA-22-5485 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 
       30.08        82.98       114.05        97.94       173.79       103.53 
TCGA-33-4583 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 
      141.34        10.98        19.76         2.63        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        1.08         0.39         6.54         8.09         7.46         7.82 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33         1.94        27.35        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        18.28        18.08        13.12        18.84         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 
       18.05         6.02         2.79         5.42         3.78         1.58 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 
        9.96         0.95         0.39         2.07         5.85         8.75 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 
        0.10         2.04         1.02         0.99         0.43         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 
        0.85         0.20         0.03        15.55        12.23        96.82 
TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       37.94        68.45        49.48        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
        3.16        22.78         1.22        23.64        11.77        43.10 
TCGA-66-2737 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2765 
        2.01         0.99         0.92         0.99        20.98         2.01 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        23.01         3.02         2.01        19.00 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2787 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
        3.98        12.00        40.01        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 
       10.06        54.08        49.05         2.73         6.64         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
        3.12        29.56        73.08        11.18        20.78         0.49 
TCGA-77-7142 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
       42.25        46.78        15.75         6.51        86.76        37.81 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 
       12.59        39.09        17.69        26.40        27.39         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 
       54.41         0.33         0.36         0.79         1.12         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 TCGA-92-8064 TCGA-94-7557 
        1.45         1.35         0.59         2.70         5.26         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        4.70        58.42         6.18         3.78         7.33        10.13 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.16               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            122.43             173.79 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            18.315             11.540 
[1] "0.2 - 122.4 (18.3)" "0.0 - 173.8 (11.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     33   82
  17P LOSS WILD-TYPE   50  160
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               33                 50
  MALE                 82                160
D69V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                       3
  17P LOSS WILD-TYPE                                     4
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                        0
  17P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P LOSS MUTATED                                        0
  17P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                         1
  17P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P LOSS MUTATED                                                           111
  17P LOSS WILD-TYPE                                                         204
D69V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS MUTATED    34  64  12   5
  17P LOSS WILD-TYPE  44 132  21  13
D69V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               34                 44
  T2               64                132
  T3               12                 21
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  17P LOSS MUTATED    66  33  14   2
  17P LOSS WILD-TYPE 135  58  12   3
D69V7, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               66                135
  N1               33                 58
  N2               14                 12
  N3                2                  3
                    vv
clus                  M0  M1  MX
  17P LOSS MUTATED    97   2  14
  17P LOSS WILD-TYPE 188   2  16
D69V8, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               97                188
  M1                2                  2
  MX               14                 16
                    vv
clus                   I  II III  IV
  17P LOSS MUTATED    59  32  22   2
  17P LOSS WILD-TYPE 106  58  40   2
D69V9, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                 59                106
  II                32                 58
  III               22                 40
  IV                 2                  2
D69V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      5  110
  17P LOSS WILD-TYPE    6  204
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 5                  6
  YES              110                204
D69V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P LOSS MUTATED                                            64
  17P LOSS WILD-TYPE                                          94
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P LOSS MUTATED                                       22             25
  17P LOSS WILD-TYPE                                     52             47
                    vv
clus                 LIFELONG NON-SMOKER
  17P LOSS MUTATED                     3
  17P LOSS WILD-TYPE                  11
D69V12, multiclass
                                             clus
vv                                            17P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               64
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    22
  CURRENT SMOKER                                            25
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            17P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              47
  LIFELONG NON-SMOKER                                         11
D69V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17P LOSS MUTATED    89   2   2   6
  17P LOSS WILD-TYPE 164   4   2  10
D69V14, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  R0               89                164
  R1                2                  4
  R2                2                  2
  RX                6                 10

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    12   6
  17Q LOSS WILD-TYPE 176 114
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                18                290 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                114 
$`17Q LOSS MUTATED`
TCGA-18-3414 TCGA-22-5472 TCGA-22-5492 TCGA-34-2600 TCGA-39-5035 TCGA-43-7656 
       13.02        64.90        16.60        61.61        15.58         6.97 
TCGA-52-7810 TCGA-60-2696 TCGA-60-2714 TCGA-60-2722 TCGA-66-2771 TCGA-66-2780 
       30.31         3.58        16.83        24.10        19.00        12.03 
TCGA-66-2786 TCGA-85-7696 TCGA-85-7950 TCGA-92-8063 TCGA-92-8065 TCGA-98-8021 
       25.97         0.59         1.97         4.01         2.27        13.58 

$`17Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       19.76        26.99         2.63        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        36.39        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        3.78         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        0.95         0.59         0.39         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.85         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 
        0.85         0.20         0.03        15.55        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       55.40        29.19         9.01        47.87        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
        7.07        23.01         3.02         2.01        19.00         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 
       35.90         0.33         0.36         0.79         1.12         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 
        3.29         2.70         3.48         5.26         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.59               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             64.90             173.79 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            14.580             12.855 
[1] "0.6 - 64.9 (14.6)"  "0.0 - 173.8 (12.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      9   10
  17Q LOSS WILD-TYPE   74  232
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                9                 74
  MALE                 10                232
D70V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                       0
  17Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                        0
  17Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q LOSS MUTATED                                        0
  17Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                         0
  17Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q LOSS MUTATED                                                            19
  17Q LOSS WILD-TYPE                                                         296
D70V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED     7   9   2   1
  17Q LOSS WILD-TYPE  71 187  31  17
D70V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                7                 71
  T2                9                187
  T3                2                 31
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED    13   4   2   0
  17Q LOSS WILD-TYPE 188  87  24   5
D70V7, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0               13                188
  N1                4                 87
  N2                2                 24
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17Q LOSS MUTATED    15   1   3
  17Q LOSS WILD-TYPE 270   3  27
D70V8, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0               15                270
  M1                1                  3
  MX                3                 27
                    vv
clus                   I  II III  IV
  17Q LOSS MUTATED    10   6   2   1
  17Q LOSS WILD-TYPE 155  84  60   3
D70V9, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  I                 10                155
  II                 6                 84
  III                2                 60
  IV                 1                  3
D70V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      1   18
  17Q LOSS WILD-TYPE   10  296
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 1                 10
  YES               18                296
D70V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q LOSS MUTATED                                            12
  17Q LOSS WILD-TYPE                                         146
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q LOSS MUTATED                                        5              2
  17Q LOSS WILD-TYPE                                     69             70
                    vv
clus                 LIFELONG NON-SMOKER
  17Q LOSS MUTATED                     0
  17Q LOSS WILD-TYPE                  14
D70V12, multiclass
                                             clus
vv                                            17Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            17Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                146
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      69
  CURRENT SMOKER                                              70
  LIFELONG NON-SMOKER                                         14
D70V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q LOSS MUTATED    13   0   0   4
  17Q LOSS WILD-TYPE 240   6   4  12
D70V14, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  R0               13                240
  R1                0                  6
  R2                0                  4
  RX                4                 12

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    21  12
  18P LOSS WILD-TYPE 167 108
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                33                275 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                12                108 
$`18P LOSS MUTATED`
TCGA-18-3415 TCGA-18-3421 TCGA-22-4594 TCGA-22-5478 TCGA-22-5482 TCGA-33-4538 
       59.51        43.76        48.33         0.79        11.74        97.94 
TCGA-33-4547 TCGA-33-6737 TCGA-37-4132 TCGA-43-7656 TCGA-46-3768 TCGA-52-7810 
       43.10        19.76         7.46         6.97         9.96        30.31 
TCGA-56-1622 TCGA-56-7222 TCGA-60-2706 TCGA-66-2744 TCGA-66-2755 TCGA-66-2766 
       28.93         0.43        82.19         0.99         0.92         1.02 
TCGA-66-2773 TCGA-66-2780 TCGA-66-2785 TCGA-66-2786 TCGA-66-2791 TCGA-66-2792 
        3.02        12.03         1.94        25.97         5.03        30.02 
TCGA-66-2795 TCGA-68-8250 TCGA-77-6842 TCGA-77-8140 TCGA-77-8144 TCGA-85-7950 
        4.01         8.02        29.56        11.54        27.39         1.97 
TCGA-90-7766 TCGA-94-7943 TCGA-96-8170 
        1.55         4.70         6.90 

$`18P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       79.20        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       82.98       114.05       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        2.79         5.42         3.78         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        6.35         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 
       17.79         5.85         8.75        27.45         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        1.02         0.99         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.20         0.03        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        0.99         2.01         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
       19.00         2.01        19.00         3.98        12.00        24.95 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        22.98        10.06        54.08 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 
       49.05         2.73         6.64         6.94         3.12        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 
       53.92        39.09        17.69       104.09        26.40         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 
        1.18         0.43         0.36         1.45         1.78         1.35 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        2.93         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-96-8169 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         3.78        13.58         7.33        10.13 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.43               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             97.94             173.79 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              9.96              14.07 
[1] "0.4 - 97.9 (10.0)"  "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      7   26
  18P LOSS WILD-TYPE   76  216
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE                7                 76
  MALE                 26                216
D71V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                       0
  18P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                        0
  18P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P LOSS MUTATED                                        0
  18P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                         0
  18P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P LOSS MUTATED                                                            33
  18P LOSS WILD-TYPE                                                         282
D71V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS MUTATED     7  22   3   1
  18P LOSS WILD-TYPE  71 174  30  17
D71V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                7                 71
  T2               22                174
  T3                3                 30
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  18P LOSS MUTATED    20   7   4   1
  18P LOSS WILD-TYPE 181  84  22   4
D71V7, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               20                181
  N1                7                 84
  N2                4                 22
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18P LOSS MUTATED    27   1   4
  18P LOSS WILD-TYPE 258   3  26
D71V8, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               27                258
  M1                1                  3
  MX                4                 26
                    vv
clus                   I  II III  IV
  18P LOSS MUTATED    18   6   7   1
  18P LOSS WILD-TYPE 147  84  55   3
D71V9, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                 18                147
  II                 6                 84
  III                7                 55
  IV                 1                  3
D71V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      0   33
  18P LOSS WILD-TYPE   11  281
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 0                 11
  YES               33                281
D71V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P LOSS MUTATED                                            19
  18P LOSS WILD-TYPE                                         139
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P LOSS MUTATED                                        7              6
  18P LOSS WILD-TYPE                                     67             66
                    vv
clus                 LIFELONG NON-SMOKER
  18P LOSS MUTATED                     1
  18P LOSS WILD-TYPE                  13
D71V12, multiclass
                                             clus
vv                                            18P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            18P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                139
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      67
  CURRENT SMOKER                                              66
  LIFELONG NON-SMOKER                                         13
D71V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18P LOSS MUTATED    22   1   0   2
  18P LOSS WILD-TYPE 231   5   4  14
D71V14, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  R0               22                231
  R1                1                  5
  R2                0                  4
  RX                2                 14

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    42  20
  18Q LOSS WILD-TYPE 146 100
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                62                246 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                20                100 
$`18Q LOSS MUTATED`
TCGA-18-3416 TCGA-18-3421 TCGA-21-1079 TCGA-21-1080 TCGA-21-5782 TCGA-21-5786 
       28.34        43.76        31.69       122.43        31.63        21.57 
TCGA-22-4599 TCGA-22-5473 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 TCGA-33-6737 
       38.17        63.52        97.94        43.10       141.34        19.76 
TCGA-33-6738 TCGA-34-5231 TCGA-37-3789 TCGA-37-4130 TCGA-39-5016 TCGA-39-5027 
       26.99        50.24         0.43         8.09        74.07        60.76 
TCGA-43-7656 TCGA-46-3768 TCGA-51-4079 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 
        6.97         9.96         0.39        30.31        27.45        28.93 
TCGA-56-7222 TCGA-56-7223 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2714 
        0.43         0.99         3.58        10.22        82.19        16.83 
TCGA-60-2726 TCGA-66-2744 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
       11.77         0.99         0.99         2.01         1.02         2.01 
TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2790 
        3.02        12.03         3.98         1.94        25.97        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-8250 TCGA-77-6842 TCGA-77-7337 
        5.03        30.02         4.01         8.02        29.56       106.95 
TCGA-77-8130 TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 TCGA-85-6798 TCGA-85-7698 
       82.92        17.69        11.54        27.39         1.12         1.61 
TCGA-85-8072 TCGA-90-7766 TCGA-90-7769 TCGA-92-8063 TCGA-94-7033 TCGA-94-7943 
        1.18         1.55         0.59         4.01         2.86         4.70 
TCGA-96-8169 TCGA-96-8170 
        6.18         6.90 

$`18Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        59.51        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
       99.16        70.13        60.89        34.78        15.55         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 
      119.80         8.78        88.08        29.85        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 
       62.86        56.32        16.60        82.98       114.05       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 
      103.53        14.07        54.44        10.98         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
       31.50        28.96        32.84        31.23        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 
        4.96         1.08         3.95         0.39         6.54         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 
        7.82         6.81         0.39         3.39        47.80        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57        18.84         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 
        1.58        66.51         6.64         6.35         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-5897 
        0.39         2.07        17.79         5.85         8.75         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        2.04         1.02         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        0.20         0.03        15.55        12.23        96.82        37.94 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       47.87        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       24.10        22.78         1.22        23.64        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 
        0.99        20.98        25.02         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 
       19.00         2.01        19.00        12.00        24.95        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
       22.98         4.04        10.06        54.08        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.64         6.94         3.12        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8139 TCGA-77-8143 
       37.81        12.59        53.92        39.09       104.09        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.79         0.59         0.33         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7767 
        0.43         0.36         1.45         1.78         1.35         2.93 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
        3.29         2.70         3.48         5.26         2.27         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.39               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            141.34             173.79 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            11.655             13.825 
[1] "0.4 - 141.3 (11.7)" "0.0 - 173.8 (13.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
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        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     12   51
  18Q LOSS WILD-TYPE   71  191
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               12                 71
  MALE                 51                191
D72V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                       1
  18Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                        1
  18Q LOSS WILD-TYPE                                      0
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q LOSS MUTATED                                        0
  18Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                         0
  18Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q LOSS MUTATED                                                            61
  18Q LOSS WILD-TYPE                                                         254
D72V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q LOSS MUTATED    14  41   7   1
  18Q LOSS WILD-TYPE  64 155  26  17
D72V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               14                 64
  T2               41                155
  T3                7                 26
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  18Q LOSS MUTATED    36  19   6   1
  18Q LOSS WILD-TYPE 165  72  20   4
D72V7, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               36                165
  N1               19                 72
  N2                6                 20
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18Q LOSS MUTATED    51   0   9
  18Q LOSS WILD-TYPE 234   4  21
D72V8, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               51                234
  M1                0                  4
  MX                9                 21
                    vv
clus                   I  II III  IV
  18Q LOSS MUTATED    32  19  11   0
  18Q LOSS WILD-TYPE 133  71  51   4
D72V9, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                 32                133
  II                19                 71
  III               11                 51
  IV                 0                  4
D72V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      1   62
  18Q LOSS WILD-TYPE   10  252
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 1                 10
  YES               62                252
D72V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q LOSS MUTATED                                            36
  18Q LOSS WILD-TYPE                                         122
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q LOSS MUTATED                                       13             10
  18Q LOSS WILD-TYPE                                     61             62
                    vv
clus                 LIFELONG NON-SMOKER
  18Q LOSS MUTATED                     4
  18Q LOSS WILD-TYPE                  10
D72V12, multiclass
                                             clus
vv                                            18Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               36
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    13
  CURRENT SMOKER                                            10
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            18Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                122
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      61
  CURRENT SMOKER                                              62
  LIFELONG NON-SMOKER                                         10
D72V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q LOSS MUTATED    44   1   0   5
  18Q LOSS WILD-TYPE 209   5   4  11
D72V14, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  R0               44                209
  R1                1                  5
  R2                0                  4
  RX                5                 11

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    32  18
  19P LOSS WILD-TYPE 156 102
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                50                258 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                18                102 
$`19P LOSS MUTATED`
TCGA-18-5592 TCGA-21-5783 TCGA-21-5786 TCGA-22-0940 TCGA-22-4601 TCGA-22-5478 
        3.02        88.08        21.57        19.99        34.75         0.79 
TCGA-22-5492 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 TCGA-34-5928 TCGA-37-4129 
       16.60       103.53        54.44        19.76         5.52         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5029 
        8.09         7.46         6.81         0.39         3.39        24.33 
TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6771 TCGA-43-7656 
       18.28        18.08        11.57         8.48         5.42         6.97 
TCGA-46-6026 TCGA-52-7811 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-60-2696 
        0.59         8.75         0.43         0.99         1.45         3.58 
TCGA-60-2707 TCGA-60-2711 TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2780 
       21.70        29.19         1.02         0.99        25.02        12.03 
TCGA-66-2782 TCGA-66-2786 TCGA-66-2793 TCGA-68-7755 TCGA-68-7756 TCGA-77-6845 
       12.00        25.97        10.06         2.73         6.64        23.28 
TCGA-77-8143 TCGA-77-8144 TCGA-85-8070 TCGA-90-7964 TCGA-92-8063 TCGA-94-7557 
       26.40        27.39         1.41         3.29         4.01         0.16 
TCGA-94-7943 TCGA-96-8169 
        4.70         6.18 

$`19P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       29.85        10.82         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        38.17        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       18.84        30.08        62.86        56.32        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       97.94        43.10       173.79       141.34        14.07        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        0.43         0.39         7.82        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       13.12        18.84        18.05         7.00         6.02         2.79 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        3.78         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.95         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       30.31        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 
        0.99         1.32         0.85         0.20         0.03        15.55 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       12.23        10.22        96.82        37.94        82.19        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        55.40         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
       23.01        19.00         3.02         2.01        19.00         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 
        5.03        30.02        54.08         4.01        49.05         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 
        8.02         3.12        29.56        73.08        75.09        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
      104.09        11.54         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.45         1.78         1.35         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        2.70         3.48         5.26         2.27         2.86        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         6.90         3.78        13.58         7.33        10.13 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.16               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            103.53             173.79 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             7.775             15.240 
[1] "0.2 - 103.5 (7.8)"  "0.0 - 173.8 (15.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     14   39
  19P LOSS WILD-TYPE   69  203
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               14                 69
  MALE                 39                203
D73V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                       0
  19P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                        0
  19P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P LOSS MUTATED                                        0
  19P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                         1
  19P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P LOSS MUTATED                                                            52
  19P LOSS WILD-TYPE                                                         263
D73V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS MUTATED    15  28   5   5
  19P LOSS WILD-TYPE  63 168  28  13
D73V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               15                 63
  T2               28                168
  T3                5                 28
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  19P LOSS MUTATED    34  10   8   0
  19P LOSS WILD-TYPE 167  81  18   5
D73V7, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               34                167
  N1               10                 81
  N2                8                 18
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P LOSS MUTATED    43   1   8
  19P LOSS WILD-TYPE 242   3  22
D73V8, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               43                242
  M1                1                  3
  MX                8                 22
                    vv
clus                   I  II III  IV
  19P LOSS MUTATED    25  11  15   1
  19P LOSS WILD-TYPE 140  79  47   3
D73V9, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                 25                140
  II                11                 79
  III               15                 47
  IV                 1                  3
D73V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5   48
  19P LOSS WILD-TYPE    6  266
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 5                  6
  YES               48                266
D73V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P LOSS MUTATED                                            22
  19P LOSS WILD-TYPE                                         136
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P LOSS MUTATED                                       19             10
  19P LOSS WILD-TYPE                                     55             62
                    vv
clus                 LIFELONG NON-SMOKER
  19P LOSS MUTATED                     2
  19P LOSS WILD-TYPE                  12
D73V12, multiclass
                                             clus
vv                                            19P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               22
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    19
  CURRENT SMOKER                                            10
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            19P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                136
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              62
  LIFELONG NON-SMOKER                                         12
D73V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19P LOSS MUTATED    37   1   1   4
  19P LOSS WILD-TYPE 216   5   3  12
D73V14, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  R0               37                216
  R1                1                  5
  R2                1                  3
  RX                4                 12

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    24   9
  19Q LOSS WILD-TYPE 164 111
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                33                275 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 9                111 
$`19Q LOSS MUTATED`
TCGA-18-3416 TCGA-18-5592 TCGA-22-0944 TCGA-22-4594 TCGA-22-4613 TCGA-33-4587 
       28.34         3.02         7.33        48.33        11.77        54.44 
TCGA-37-4129 TCGA-37-4135 TCGA-37-4141 TCGA-43-3394 TCGA-43-6771 TCGA-43-7656 
        6.54         6.81         0.39        11.57         5.42         6.97 
TCGA-46-6026 TCGA-52-7810 TCGA-52-7811 TCGA-56-7222 TCGA-56-7579 TCGA-60-2696 
        0.59        30.31         8.75         0.43         1.45         3.58 
TCGA-60-2707 TCGA-60-2711 TCGA-66-2753 TCGA-66-2759 TCGA-66-2786 TCGA-66-2794 
       21.70        29.19         1.02        25.02        25.97        54.08 
TCGA-68-7755 TCGA-77-6845 TCGA-77-8143 TCGA-77-8144 TCGA-85-7950 TCGA-85-8070 
        2.73        23.28        26.40        27.39         1.97         1.41 
TCGA-85-8071 TCGA-92-8063 TCGA-94-7943 
        0.46         4.01         4.70 

$`19Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       29.85        21.57        10.82        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       35.08        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02        19.30         9.53        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
      141.34        14.07        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 
        0.39         8.09         7.46         7.82         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.84         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        3.78         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.95         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 
        0.99         1.32         0.85         0.20         0.03        15.55 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       12.23        10.22        96.82        37.94        82.19        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        55.40         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
        4.01        49.05         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       29.56        73.08        75.09        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 
        1.15         1.25         0.85         1.97         0.53         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
        2.93         0.59         3.29         2.70         3.48         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.27         2.86         0.16        39.88        58.42         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         3.78        13.58         7.33        10.13 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.39               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             54.44             173.79 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              6.97              14.10 
[1] "0.4 - 54.4 (7.0)"   "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     10   26
  19Q LOSS WILD-TYPE   73  216
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               10                 73
  MALE                 26                216
D74V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                       0
  19Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                        1
  19Q LOSS WILD-TYPE                                      0
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q LOSS MUTATED                                        0
  19Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                         1
  19Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q LOSS MUTATED                                                            34
  19Q LOSS WILD-TYPE                                                         281
D74V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED     8  20   6   2
  19Q LOSS WILD-TYPE  70 176  27  16
D74V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                8                 70
  T2               20                176
  T3                6                 27
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  19Q LOSS MUTATED    24   6   5   0
  19Q LOSS WILD-TYPE 177  85  21   5
D74V7, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               24                177
  N1                6                 85
  N2                5                 21
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q LOSS MUTATED    30   0   5
  19Q LOSS WILD-TYPE 255   4  25
D74V8, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               30                255
  M1                0                  4
  MX                5                 25
                    vv
clus                   I  II III  IV
  19Q LOSS MUTATED    17  10   8   0
  19Q LOSS WILD-TYPE 148  80  54   4
D74V9, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                 17                148
  II                10                 80
  III                8                 54
  IV                 0                  4
D74V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      3   33
  19Q LOSS WILD-TYPE    8  281
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 3                  8
  YES               33                281
D74V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q LOSS MUTATED                                            13
  19Q LOSS WILD-TYPE                                         145
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q LOSS MUTATED                                       12              9
  19Q LOSS WILD-TYPE                                     62             63
                    vv
clus                 LIFELONG NON-SMOKER
  19Q LOSS MUTATED                     2
  19Q LOSS WILD-TYPE                  12
D74V12, multiclass
                                             clus
vv                                            19Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               13
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            19Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                145
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      62
  CURRENT SMOKER                                              63
  LIFELONG NON-SMOKER                                         12
D74V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q LOSS MUTATED    24   1   1   6
  19Q LOSS WILD-TYPE 229   5   3  10
D74V14, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  R0               24                229
  R1                1                  5
  R2                1                  3
  RX                6                 10

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    13   3
  20P LOSS WILD-TYPE 175 117
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                16                292 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 3                117 
$`20P LOSS MUTATED`
TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-37-4135 TCGA-39-5034 TCGA-52-7810 
       28.34        90.51        15.55         6.81        36.39        30.31 
TCGA-60-2706 TCGA-60-2714 TCGA-66-2766 TCGA-66-2768 TCGA-66-2790 TCGA-77-7337 
       82.19        16.83         1.02         2.01        22.98       106.95 
TCGA-77-8144 TCGA-85-8071 TCGA-92-8065 TCGA-96-7544 
       27.39         0.46         2.27        39.88 

$`20P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 
       99.16        70.13        60.89        34.78        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.85         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
        1.32         0.85         0.20         0.03        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        96.82        37.94        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        26.40         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53         1.41         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.36         1.45         1.78         1.35         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        0.59         3.29         2.70         3.48         4.01         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16         4.70        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.46               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            106.95             173.79 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            25.185             12.410 
[1] "0.5 - 107.0 (25.2)" "0.0 - 173.8 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
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  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "2.9"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      4   12
  20P LOSS WILD-TYPE   79  230
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                4                 79
  MALE                 12                230
D75V4, continuous
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 52 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5783         TCGA-21-5787         TCGA-22-1017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4613 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-37-4129         TCGA-37-4130 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-5819 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-56-7222         TCGA-56-7822 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2698         TCGA-60-2712 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2725         TCGA-60-2726 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-70-6722         TCGA-70-6723         TCGA-85-7843 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7844         TCGA-92-7340         TCGA-92-7341 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-7454 
"20P LOSS WILD-TYPE" 
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                       0
  20P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                        0
  20P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P LOSS MUTATED                                        0
  20P LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                         0
  20P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P LOSS MUTATED                                                            16
  20P LOSS WILD-TYPE                                                         299
D75V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED     2  11   3   0
  20P LOSS WILD-TYPE  76 185  30  18
D75V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                2                 76
  T2               11                185
  T3                3                 30
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED     8   7   1   0
  20P LOSS WILD-TYPE 193  84  25   5
D75V7, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                8                193
  N1                7                 84
  N2                1                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  20P LOSS MUTATED    14   0   2
  20P LOSS WILD-TYPE 271   4  28
D75V8, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               14                271
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  20P LOSS MUTATED     4   9   3   0
  20P LOSS WILD-TYPE 161  81  59   4
D75V9, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                  4                161
  II                 9                 81
  III                3                 59
  IV                 0                  4
D75V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      0   16
  20P LOSS WILD-TYPE   11  298
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 0                 11
  YES               16                298
D75V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P LOSS MUTATED                                             7
  20P LOSS WILD-TYPE                                         151
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P LOSS MUTATED                                        4              4
  20P LOSS WILD-TYPE                                     70             68
                    vv
clus                 LIFELONG NON-SMOKER
  20P LOSS MUTATED                     1
  20P LOSS WILD-TYPE                  13
D75V12, multiclass
                                             clus
vv                                            20P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            20P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                151
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      70
  CURRENT SMOKER                                              68
  LIFELONG NON-SMOKER                                         13
D75V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20P LOSS MUTATED    12   0   0   1
  20P LOSS WILD-TYPE 241   6   4  15
D75V14, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  R0               12                241
  R1                0                  6
  R2                0                  4
  RX                1                 15

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    11   5
  20Q LOSS WILD-TYPE 177 115
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                16                292 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                115 
$`20Q LOSS MUTATED`
TCGA-18-3415 TCGA-18-3416 TCGA-18-4721 TCGA-22-4604 TCGA-33-4583 TCGA-34-2600 
       59.51        28.34        90.51        13.12       141.34        61.61 
TCGA-34-7107 TCGA-39-5034 TCGA-43-3394 TCGA-66-2766 TCGA-66-2791 TCGA-85-7698 
        1.08        36.39        11.57         1.02         5.03         1.61 
TCGA-85-7950 TCGA-85-8071 TCGA-92-8065 TCGA-96-7544 
        1.97         0.46         2.27        39.88 

$`20Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       11.34        13.02        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
        2.79         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       22.95         5.52         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       13.12        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39         2.07        17.79         5.85        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.03        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04        22.98        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         0.33         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53         1.41         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.36         1.45         1.78         1.35         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        0.59         3.29         2.70         3.48         4.01         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16         4.70        58.42         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.46               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            141.34             173.79 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            12.345             13.350 
[1] "0.5 - 141.3 (12.3)" "0.0 - 173.8 (13.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
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        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      3   14
  20Q LOSS WILD-TYPE   80  228
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                3                 80
  MALE                 14                228
D76V4, continuous
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 53 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5783         TCGA-21-5787         TCGA-22-1017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4613         TCGA-22-5472 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5473         TCGA-22-5474         TCGA-22-5477 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5478         TCGA-22-5480         TCGA-22-5482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-34-5234 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-5819 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-52-7810         TCGA-56-7222 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2696         TCGA-60-2698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2715         TCGA-60-2725 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-70-6722         TCGA-70-6723 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7843         TCGA-85-7844         TCGA-92-7340 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-98-7454 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                       0
  20Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                        0
  20Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q LOSS MUTATED                                        0
  20Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                         0
  20Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q LOSS MUTATED                                                            17
  20Q LOSS WILD-TYPE                                                         298
D76V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     4  11   2   0
  20Q LOSS WILD-TYPE  74 185  31  18
D76V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                4                 74
  T2               11                185
  T3                2                 31
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED    11   4   1   1
  20Q LOSS WILD-TYPE 190  87  25   4
D76V7, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0               11                190
  N1                4                 87
  N2                1                 25
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20Q LOSS MUTATED    15   0   2
  20Q LOSS WILD-TYPE 270   4  28
D76V8, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0               15                270
  M1                0                  4
  MX                2                 28
                    vv
clus                   I  II III  IV
  20Q LOSS MUTATED     8   6   3   0
  20Q LOSS WILD-TYPE 157  84  59   4
D76V9, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                  8                157
  II                 6                 84
  III                3                 59
  IV                 0                  4
D76V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   17
  20Q LOSS WILD-TYPE   11  297
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                 11
  YES               17                297
D76V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q LOSS MUTATED                                             8
  20Q LOSS WILD-TYPE                                         150
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q LOSS MUTATED                                        4              5
  20Q LOSS WILD-TYPE                                     70             67
                    vv
clus                 LIFELONG NON-SMOKER
  20Q LOSS MUTATED                     0
  20Q LOSS WILD-TYPE                  14
D76V12, multiclass
                                             clus
vv                                            20Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            20Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                150
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      70
  CURRENT SMOKER                                              67
  LIFELONG NON-SMOKER                                         14
D76V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q LOSS MUTATED    12   1   0   2
  20Q LOSS WILD-TYPE 241   5   4  14
D76V14, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  R0               12                241
  R1                1                  5
  R2                0                  4
  RX                2                 14

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    61  31
  21Q LOSS WILD-TYPE 127  89
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                92                216 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                31                 89 
$`21Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 
       81.07        46.52        13.02        59.51        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 TCGA-21-1079 
        2.79        90.51       115.59        99.16        70.13        31.69 
TCGA-21-1083 TCGA-21-5786 TCGA-22-0944 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 
        8.78        21.57         7.33        14.10        20.45        35.08 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5473 TCGA-22-5474 TCGA-22-5483 
       38.17        13.12        11.77        63.52        14.60        18.84 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-34-5231 TCGA-34-5927 
       56.32        82.98        97.94        43.10        50.24        22.95 
TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        1.08         0.43         0.39         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 TCGA-39-5036 TCGA-43-2576 
       74.07        60.76        24.33        36.39        35.64        18.28 
TCGA-43-3920 TCGA-43-7656 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4080 
       18.84         6.97         6.35         9.96         0.59         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        2.07        17.79         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-60-2707 TCGA-60-2711 TCGA-60-2712 TCGA-66-2742 TCGA-66-2754 
        0.85        21.70        29.19         9.01        21.07         2.01 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2771 TCGA-66-2777 
       20.98        25.02         2.01         1.02        19.00         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        12.00         1.94        25.97        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2800 TCGA-68-7756 TCGA-68-8250 TCGA-77-6842 
        5.03        30.02        49.05         6.64         8.02        29.56 
TCGA-77-7335 TCGA-77-7463 TCGA-77-8150 TCGA-77-8154 TCGA-85-6561 TCGA-85-6798 
       70.09        46.78        54.41        35.90         0.79         1.12 
TCGA-85-7696 TCGA-85-7698 TCGA-85-8070 TCGA-85-8071 TCGA-90-7766 TCGA-94-7557 
        0.59         1.61         1.41         0.46         1.55         0.16 
TCGA-94-7943 TCGA-98-8021 
        4.70        13.58 

$`21Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 
       12.16         4.47        79.46         4.80        11.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 
        1.61        43.76         3.02        27.16        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 
       34.78        15.55       122.43         9.30       119.80        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       88.08        29.85        10.82        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 
       64.21         1.74        27.02        48.82        48.33        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
        0.56        34.75        32.02        19.30         9.53        31.69 
TCGA-22-5472 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       64.90        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4566 
       11.74        30.08        62.86        16.60       114.05       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.23        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4129 TCGA-37-4130 
       14.07         5.52         4.96         3.95         6.54         8.09 
TCGA-37-4132 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        7.46         0.39        47.80        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
       70.03         1.71         1.94        27.35        15.58         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 
       17.88        18.08        13.12        11.57         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 
        7.00         6.02         2.79         5.42         3.78         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-46-6025 TCGA-51-4079 TCGA-52-7809 TCGA-52-7810 
       66.51         6.64         0.95         0.39         5.85        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.99         0.20         0.03        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 
       10.22        96.82        37.94        82.19        68.45        49.48 
TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       55.40        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10         2.01         0.99         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 
        0.92         0.99         0.99         0.99         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2778 TCGA-66-2783 TCGA-66-2787 
        7.07        23.01         3.02        19.00        24.95        40.01 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
        4.04        22.98        10.06        54.08         4.01         2.73 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.94         3.12        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 
       89.95        20.78         0.49        42.25       106.95         0.16 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8156 TCGA-85-6560 
       26.40        27.39         6.97         9.63         0.33         0.36 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.97         0.53         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.78         1.35         2.93         0.59         3.29         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        3.48         4.01         5.26         2.27         2.86        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
       58.42         6.18         6.90         3.78         7.33        10.13 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.16               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            115.59             173.79 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             13.84              12.41 
[1] "0.2 - 115.6 (13.8)" "0.0 - 173.8 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     16   83
  21Q LOSS WILD-TYPE   67  159
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               16                 67
  MALE                 83                159
D77V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                       2
  21Q LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                        1
  21Q LOSS WILD-TYPE                                      0
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q LOSS MUTATED                                        0
  21Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                         0
  21Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q LOSS MUTATED                                                            96
  21Q LOSS WILD-TYPE                                                         219
D77V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q LOSS MUTATED    22  57  13   7
  21Q LOSS WILD-TYPE  56 139  20  11
D77V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               22                 56
  T2               57                139
  T3               13                 20
  T4                7                 11
                    vv
clus                  N0  N1  N2  N3
  21Q LOSS MUTATED    62  25  10   1
  21Q LOSS WILD-TYPE 139  66  16   4
D77V7, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               62                139
  N1               25                 66
  N2               10                 16
  N3                1                  4
                    vv
clus                  M0  M1  MX
  21Q LOSS MUTATED    88   2   6
  21Q LOSS WILD-TYPE 197   2  24
D77V8, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               88                197
  M1                2                  2
  MX                6                 24
                    vv
clus                   I  II III  IV
  21Q LOSS MUTATED    50  21  25   2
  21Q LOSS WILD-TYPE 115  69  37   2
D77V9, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                 50                115
  II                21                 69
  III               25                 37
  IV                 2                  2
D77V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      4   95
  21Q LOSS WILD-TYPE    7  219
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 4                  7
  YES               95                219
D77V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q LOSS MUTATED                                            47
  21Q LOSS WILD-TYPE                                         111
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q LOSS MUTATED                                       25             22
  21Q LOSS WILD-TYPE                                     49             50
                    vv
clus                 LIFELONG NON-SMOKER
  21Q LOSS MUTATED                     4
  21Q LOSS WILD-TYPE                  10
D77V12, multiclass
                                             clus
vv                                            21Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               47
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    25
  CURRENT SMOKER                                            22
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            21Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                111
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      49
  CURRENT SMOKER                                              50
  LIFELONG NON-SMOKER                                         10
D77V13, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q LOSS MUTATED    83   2   1   3
  21Q LOSS WILD-TYPE 170   4   3  13
D77V14, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  R0               83                170
  R1                2                  4
  R2                1                  3
  RX                3                 13

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    19  12
  22Q LOSS WILD-TYPE 169 108
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                31                277 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                12                108 
$`22Q LOSS MUTATED`
TCGA-18-4083 TCGA-21-1070 TCGA-22-5480 TCGA-22-5483 TCGA-33-4583 TCGA-33-4587 
        6.15       115.59        71.34        18.84       141.34        54.44 
TCGA-33-6737 TCGA-34-5928 TCGA-37-4129 TCGA-37-4132 TCGA-37-5819 TCGA-39-5029 
       19.76         5.52         6.54         7.46         3.39        24.33 
TCGA-43-2578 TCGA-43-2581 TCGA-43-7658 TCGA-52-7812 TCGA-60-2695 TCGA-66-2753 
       18.08        13.12        66.51        27.45        15.55         1.02 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 TCGA-66-2778 TCGA-66-2789 
        0.99        25.02         1.02        19.00        19.00         4.04 
TCGA-66-2791 TCGA-66-2793 TCGA-68-8250 TCGA-77-7337 TCGA-77-8150 TCGA-92-8063 
        5.03        10.06         8.02       106.95        54.41         4.01 
TCGA-92-8065 
        2.27 

$`22Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
       43.76         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       54.28        79.20        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      103.53        14.07        10.98        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 
        4.96         1.08         3.95         0.43         0.39         8.09 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.28        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39         2.07        17.79         5.85        30.31         8.75 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       16.96        43.10         2.01        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.92         0.99        20.98         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 
        2.01         7.07        23.01         3.02         2.01        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98        22.98        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        6.97         9.63        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        0.46         1.18         0.43         0.36         1.45         1.78 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.35         1.55         2.93         0.59         3.29         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        3.48         5.26         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.99               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            141.34             173.79 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             15.55              13.02 
[1] "1.0 - 141.3 (15.6)" "0.0 - 173.8 (13.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-60-2695         TCGA-60-2696 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
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  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-90-6837 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7766         TCGA-90-7767         TCGA-90-7769 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7964         TCGA-92-7340         TCGA-92-7341 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-94-7943 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-7544         TCGA-96-7545         TCGA-96-8169 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-8170         TCGA-98-7454         TCGA-98-8021 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     13   20
  22Q LOSS WILD-TYPE   70  222
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               13                 70
  MALE                 20                222
D78V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                       1
  22Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                        1
  22Q LOSS WILD-TYPE                                      0
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q LOSS MUTATED                                        0
  22Q LOSS WILD-TYPE                                      1
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                         1
  22Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q LOSS MUTATED                                                            30
  22Q LOSS WILD-TYPE                                                         285
D78V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED    10  16   6   1
  22Q LOSS WILD-TYPE  68 180  27  17
D78V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               10                 68
  T2               16                180
  T3                6                 27
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  22Q LOSS MUTATED    14   9   7   3
  22Q LOSS WILD-TYPE 187  82  19   2
D78V7, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               14                187
  N1                9                 82
  N2                7                 19
  N3                3                  2
                    vv
clus                  M0  M1  MX
  22Q LOSS MUTATED    28   1   4
  22Q LOSS WILD-TYPE 257   3  26
D78V8, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               28                257
  M1                1                  3
  MX                4                 26
                    vv
clus                   I  II III  IV
  22Q LOSS MUTATED    10   8  14   1
  22Q LOSS WILD-TYPE 155  82  48   3
D78V9, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                 10                155
  II                 8                 82
  III               14                 48
  IV                 1                  3
D78V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      1   32
  22Q LOSS WILD-TYPE   10  282
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 1                 10
  YES               32                282
D78V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q LOSS MUTATED                                            19
  22Q LOSS WILD-TYPE                                         139
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q LOSS MUTATED                                        8              4
  22Q LOSS WILD-TYPE                                     66             68
                    vv
clus                 LIFELONG NON-SMOKER
  22Q LOSS MUTATED                     2
  22Q LOSS WILD-TYPE                  12
D78V12, multiclass
                                             clus
vv                                            22Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            22Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                139
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      66
  CURRENT SMOKER                                              68
  LIFELONG NON-SMOKER                                         12
D78V13, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q LOSS MUTATED    24   1   1   3
  22Q LOSS WILD-TYPE 229   5   3  13
D78V14, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  R0               24                229
  R1                1                  5
  R2                1                  3
  RX                3                 13

Clustering(79) Variable = Xq loss mutation analysis
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     7   6
  XQ LOSS WILD-TYPE 181 114
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               13               295 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               114 
$`XQ LOSS MUTATED`
TCGA-22-4591 TCGA-22-5481 TCGA-22-5491 TCGA-33-4532 TCGA-33-4587 TCGA-43-5668 
       20.45        79.20        56.32        82.98        54.44         8.48 
TCGA-46-6025 TCGA-52-7810 TCGA-66-2763 TCGA-66-2773 TCGA-66-2789 TCGA-66-2790 
        0.95        30.31         0.99         3.02         4.04        22.98 
TCGA-68-7755 
        2.73 

$`XQ LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
        0.79        54.28        71.34        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        14.07        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.20         0.03        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        23.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
        4.01        49.05         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 
        0.43         0.36         1.45         1.78         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        2.93         0.59         3.29         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       58.42         6.18         6.90         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.95              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            82.98            173.79 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            20.45             13.12 
[1] "0.9 - 83.0 (20.4)"  "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-60-2695        TCGA-60-2696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2707        TCGA-60-2708        TCGA-60-2709 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-66-2727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2734        TCGA-66-2737        TCGA-66-2742        TCGA-66-2744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2753        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2790 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-68-7755        TCGA-68-7756 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-77-6842 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8154        TCGA-77-8156        TCGA-85-6560 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7843        TCGA-85-7844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7950        TCGA-85-8048        TCGA-85-8049        TCGA-85-8052 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8070        TCGA-85-8071        TCGA-85-8072        TCGA-85-8276 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8277        TCGA-85-8287        TCGA-85-8288        TCGA-90-6837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8021        TCGA-98-8022        TCGA-98-8023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      5    8
  XQ LOSS WILD-TYPE   78  234
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               5                78
  MALE                 8               234
D79V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                       0
  XQ LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                        0
  XQ LOSS WILD-TYPE                                      1
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ LOSS MUTATED                                        0
  XQ LOSS WILD-TYPE                                      1
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                         1
  XQ LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ LOSS MUTATED                                                            12
  XQ LOSS WILD-TYPE                                                         303
D79V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED     4   7   2   0
  XQ LOSS WILD-TYPE  74 189  31  18
D79V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               4                74
  T2               7               189
  T3               2                31
  T4               0                18
                   vv
clus                 N0  N1  N2  N3
  XQ LOSS MUTATED     6   5   1   1
  XQ LOSS WILD-TYPE 195  86  25   4
D79V7, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0               6               195
  N1               5                86
  N2               1                25
  N3               1                 4
                   vv
clus                 M0  M1  MX
  XQ LOSS MUTATED    12   0   1
  XQ LOSS WILD-TYPE 273   4  29
D79V8, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              12               273
  M1               0                 4
  MX               1                29
                   vv
clus                  I  II III  IV
  XQ LOSS MUTATED     5   6   2   0
  XQ LOSS WILD-TYPE 160  84  60   4
D79V9, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 5               160
  II                6                84
  III               2                60
  IV                0                 4
D79V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      0   13
  XQ LOSS WILD-TYPE   11  301
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                0                11
  YES              13               301
D79V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ LOSS MUTATED                                             7
  XQ LOSS WILD-TYPE                                         151
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ LOSS MUTATED                                        3              3
  XQ LOSS WILD-TYPE                                     71             69
                   vv
clus                LIFELONG NON-SMOKER
  XQ LOSS MUTATED                     0
  XQ LOSS WILD-TYPE                  14
D79V12, multiclass
                                             clus
vv                                            XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7               151
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                71
  CURRENT SMOKER                                            3                69
  LIFELONG NON-SMOKER                                       0                14
D79V13, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ LOSS MUTATED    10   0   0   0
  XQ LOSS WILD-TYPE 243   6   4  16
D79V14, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  R0              10               243
  R1               0                 6
  R2               0                 4
  RX               0                16
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V13 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V14 
             "COMPLETENESS.OF.RESECTION" 
> q(save="no")
