ClinicalAnalysisAllGenes_new1 data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RPPA_preprocess/LUSC-TP/2844290/0.GDAC_RPPA_preprocess.Finished/LUSC-TP.rppa.txt |
ClinicalAnalysisAllGenes_new1 clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2843850/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff p | 1 |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff fdr | 0.05 |
ClinicalAnalysisAllGenesReport_nozzle2 max table rows | 10 |
ClinicalAnalysisAllGenesReport_nozzle2 nozzle ver | Nozzle.R1 |
ClinicalAnalysisAllGenesReport_nozzle2 options | RPPA_EXPR |
Execution Times: | |
Submitted: | 18:54:58 08-04-13 |
Completed: | |
Elapsed: | 00 hrs 24 mins 01 secs |
step 1. ClinicalAnalysisAllGenes_new [id: 373141] Associate individual gene expression profiles to clinical parameters by survival test, t-test, correlation test, or ANOVA test
urn:lsid:broadinstitute.org:cancer.genome.analysis:00333:13
data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RPPA_preprocess/LUSC-TP/2844290/0.GDAC_RPPA_preprocess.Finished/LUSC-TP.rppa.txt |
clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2843850/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt |
genes filtered by list | |
genes filtered by variance | ALL |
samples filtered by list | |
features used | ALL |
output name | |
job description |
Output Files: | |
LUSC-TP.rppa.exprdata.gct | |
LUSC-TP.clin.merged.picked.clindata.txt | |
LUSC-TP.rppa.analysis.results.RData | |
LUSC-TP.rppa.clinical.results.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 18:55:01 08-04-13 |
Completed: | 19:15:15 08-04-13 |
Elapsed: | 00 hrs 20 mins 13 secs |
step 2. ClinicalAnalysisAllGenesReport_nozzle [id: 373142] Generate a report to summarize the results from ClinicalAnalysisAllGenes module
urn:lsid:broadinstitute.org:cancer.genome.analysis:00334:29
all result file | LUSC-TP.rppa.clinical.results.txt |
RData file | LUSC-TP.rppa.analysis.results.RData |
expression file | LUSC-TP.rppa.exprdata.gct |
clinical file | LUSC-TP.clin.merged.picked.clindata.txt |
cutoff p | 1 |
cutoff fdr | 0.05 |
max table rows | 10 |
nozzle ver | Nozzle.R1 |
options | RPPA_EXPR |
report title | |
job description |
Execution Times: | |
Submitted: | 18:55:01 08-04-13 |
Completed: | 19:18:58 08-04-13 |
Elapsed: | 00 hrs 23 mins 56 secs |