
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376723/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/OV-TP/2909440/1.GDAC_mergedClustering.Finished/OV-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=OV-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oT=OV-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=586, in cluster file=569, common to both=569
[1]  80 569
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              104               465 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              104               465 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              161               408 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              161               408 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              129               440 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              129               440 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              103               466 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              103               466 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              109               460 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              109               460 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              208               361 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              208               361 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               31               538 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               31               538 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               16               553 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               16               553 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              147               422 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              147               422 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               34               535 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               34               535 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              121               448 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              121               448 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               62               507 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               62               507 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              125               444 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              125               444 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              153               416 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              153               416 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               86               483 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               86               483 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              204               365 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              204               365 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               61               508 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               61               508 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               27               542 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               27               542 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               132                437 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               132                437 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                68                501 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                68                501 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                40                529 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                40                529 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                62                507 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                62                507 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               208                361 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               208                361 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               122                447 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               122                447 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                41                528 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                41                528 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                34                535 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                34                535 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                25                544 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                25                544 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                31                538 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                31                538 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                16                553 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                16                553 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                11                558 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                11                558 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                546 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                546 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                74                495 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                74                495 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                41                528 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                41                528 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                99                470 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                99                470 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                92                477 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                92                477 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               234                335 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               234                335 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               273                296 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               273                296 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                70                499 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                70                499 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                560 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                560 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               34               535 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               34               535 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               35               534 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               35               534 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               547 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               547 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               543 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               543 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               539 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               539 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               61               508 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               61               508 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               546 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               546 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              262               307 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              262               307 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              302               267 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              302               267 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               85               484 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               85               484 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              172               397 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              172               397 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              126               443 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              126               443 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              198               371 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              198               371 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               91               478 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               91               478 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               48               521 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               48               521 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              235               334 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              235               334 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               63               506 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               63               506 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              212               357 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              212               357 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              240               329 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              240               329 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                67                502 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                67                502 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                90                479 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                90                479 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               146                423 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               146                423 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               108                461 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               108                461 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                51                518 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                51                518 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                76                493 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                76                493 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               262                307 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               262                307 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               164                405 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               164                405 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               220                349 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               220                349 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               271                298 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               271                298 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               360                209 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               360                209 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               429                140 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               429                140 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               332                237 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               332                237 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               187                382 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               187                382 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               236                333 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               236                333 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               145                424 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               145                424 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               145                424 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               145                424 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                38                531 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                38                531 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                22                547 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                22                547 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               151                418 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               151                418 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               387                182 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               387                182 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              101               468 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              101               468 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 12 rows and 569 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 569 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              30               185
  CLUS_2              49               164
  CLUS_3              22               107
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              49               184
  CLUS_2              32               167
  CLUS_3              20               105
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              30               129
  CLUS_2              21               143
  CLUS_3              49               183
D1V4, multiclass
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              27               139
  CLUS_2              34               170
  CLUS_3              43               156
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              31               140
  CLUS_2              34               142
  CLUS_3              39               182
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              13               107
  CLUS_2              43               153
  CLUS_3              15                67
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               9                48
  CLUS_2              19                65
  CLUS_3              22                86
  CLUS_4              21               128
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              22                78
  CLUS_2              16                51
  CLUS_3              17                74
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              19                91
  CLUS_2              26                84
  CLUS_3              10                28
D1V11, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              17               104
  CLUS_2              43               139
  CLUS_3              29               115
D1V12, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              53               228
  CLUS_3              35               126

Clustering(2) Variable = 1q gain mutation analysis
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              64               151
  CLUS_2              60               153
  CLUS_3              31                98
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              60               173
  CLUS_2              61               138
  CLUS_3              34                91
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              44               115
  CLUS_2              42               122
  CLUS_3              68               164
D2V4, multiclass
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              38               128
  CLUS_2              42               162
  CLUS_3              81               118
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              57               114
  CLUS_2              48               128
  CLUS_3              56               165
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              30                90
  CLUS_2              63               133
  CLUS_3              22                60
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              15                42
  CLUS_2              26                58
  CLUS_3              34                74
  CLUS_4              40               109
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              29                71
  CLUS_2              24                43
  CLUS_3              30                61
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              37                73
  CLUS_2              32                78
  CLUS_3              14                24
D2V11, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              29                92
  CLUS_2              61               121
  CLUS_3              43               101
D2V12, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              78               203
  CLUS_3              54               107

Clustering(3) Variable = 2p gain mutation analysis
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              76               139
  CLUS_2              23               190
  CLUS_3              26               103
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              34               199
  CLUS_2              77               122
  CLUS_3              14               111
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              33               126
  CLUS_2              35               129
  CLUS_3              57               175
D3V4, multiclass
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              22               144
  CLUS_2              28               176
  CLUS_3              79               120
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              70               101
  CLUS_2              34               142
  CLUS_3              25               196
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              23                97
  CLUS_2              56               140
  CLUS_3              13                69
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              12                45
  CLUS_2              19                65
  CLUS_3              31                77
  CLUS_4              30               119
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              18                82
  CLUS_2               8                59
  CLUS_3              36                55
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              37                73
  CLUS_2              21                89
  CLUS_3               4                34
D3V11, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              29                92
  CLUS_2              37               145
  CLUS_3              38               106
D3V12, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              60               221
  CLUS_3              44               117

Clustering(4) Variable = 2q gain mutation analysis
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              61               154
  CLUS_2              21               192
  CLUS_3              17               112
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              26               207
  CLUS_2              59               140
  CLUS_3              14               111
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              25               134
  CLUS_2              29               135
  CLUS_3              45               187
D4V4, multiclass
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              17               149
  CLUS_2              23               181
  CLUS_3              63               136
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              53               118
  CLUS_2              25               151
  CLUS_3              25               196
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              15               105
  CLUS_2              44               152
  CLUS_3              10                72
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              13                44
  CLUS_2              17                67
  CLUS_3              19                89
  CLUS_4              20               129
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              14                86
  CLUS_2               6                61
  CLUS_3              27                64
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              30                80
  CLUS_2              14                96
  CLUS_3               3                35
D4V11, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              18               103
  CLUS_2              33               149
  CLUS_3              29               115
D4V12, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              47               234
  CLUS_3              33               128

Clustering(5) Variable = 3p gain mutation analysis
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              35               180
  CLUS_2              45               168
  CLUS_3              26               103
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              50               183
  CLUS_2              40               159
  CLUS_3              16               109
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              39               120
  CLUS_2              30               134
  CLUS_3              37               195
D5V4, multiclass
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              19               147
  CLUS_2              37               167
  CLUS_3              53               146
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              35               136
  CLUS_2              33               143
  CLUS_3              41               180
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              28                92
  CLUS_2              32               164
  CLUS_3              19                63
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                49
  CLUS_2              14                70
  CLUS_3              23                85
  CLUS_4              34               115
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              22                78
  CLUS_2              13                54
  CLUS_3              15                76
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              20                90
  CLUS_2              23                87
  CLUS_3               7                31
D5V11, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              21               100
  CLUS_2              37               145
  CLUS_3              29               115
D5V12, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              53               228
  CLUS_3              34               127

Clustering(6) Variable = 3q gain mutation analysis
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              80               135
  CLUS_2              76               137
  CLUS_3              48                81
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              87               146
  CLUS_2              87               112
  CLUS_3              30                95
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              60                99
  CLUS_2              63               101
  CLUS_3              81               151
D6V4, multiclass
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              38               128
  CLUS_2              63               141
  CLUS_3             107                92
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              80                91
  CLUS_2              59               117
  CLUS_3              68               153
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              49                71
  CLUS_2              66               130
  CLUS_3              30                52
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              15                42
  CLUS_2              28                56
  CLUS_3              44                64
  CLUS_4              58                91
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              34                66
  CLUS_2              21                46
  CLUS_3              38                53
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              43                67
  CLUS_2              38                72
  CLUS_3              12                26
D6V11, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              49                72
  CLUS_2              60               122
  CLUS_3              54                90
D6V12, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              98               183
  CLUS_3              64                97

Clustering(7) Variable = 4p gain mutation analysis
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13               202
  CLUS_2              11               202
  CLUS_3               6               123
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14               219
  CLUS_2              12               187
  CLUS_3               4               121
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3               156
  CLUS_2               6               158
  CLUS_3              21               211
D7V4, multiclass
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4               162
  CLUS_2              15               189
  CLUS_3              12               187
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              15               156
  CLUS_2               5               171
  CLUS_3              11               210
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2               118
  CLUS_2              15               181
  CLUS_3               1                81
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                56
  CLUS_2               5                79
  CLUS_3               7               101
  CLUS_4               5               144
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               7                93
  CLUS_2               4                63
  CLUS_3               7                84
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6               104
  CLUS_2              10               100
  CLUS_3               2                36
D7V11, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              11               110
  CLUS_2              12               170
  CLUS_3               6               138
D7V12, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              19               262
  CLUS_3               9               152

Clustering(8) Variable = 4q gain mutation analysis
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               7               208
  CLUS_2               6               207
  CLUS_3               3               126
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6               227
  CLUS_2               7               192
  CLUS_3               3               122
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4               155
  CLUS_2               4               160
  CLUS_3               8               224
D8V4, multiclass
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2               164
  CLUS_2               7               197
  CLUS_3               7               192
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              10               161
  CLUS_2               3               173
  CLUS_3               3               218
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1               119
  CLUS_2              10               186
  CLUS_3               0                82
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                56
  CLUS_2               2                82
  CLUS_3               6               102
  CLUS_4               2               147
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3                97
  CLUS_2               2                65
  CLUS_3               4                87
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4               106
  CLUS_2               5               105
  CLUS_3               0                38
D8V11, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               8               113
  CLUS_2               6               176
  CLUS_3               0               144
D8V12, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              13               268
  CLUS_3               1               160

Clustering(9) Variable = 5p gain mutation analysis
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              53               162
  CLUS_2              52               161
  CLUS_3              37                92
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              64               169
  CLUS_2              53               146
  CLUS_3              25               100
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              43               116
  CLUS_2              44               120
  CLUS_3              55               177
D9V4, multiclass
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              18               148
  CLUS_2              63               141
  CLUS_3              66               133
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              51               120
  CLUS_2              41               135
  CLUS_3              55               166
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              34                86
  CLUS_2              50               146
  CLUS_3              18                64
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              10                47
  CLUS_2              18                66
  CLUS_3              34                74
  CLUS_4              40               109
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              26                74
  CLUS_2              19                48
  CLUS_3              19                72
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              26                84
  CLUS_2              29                81
  CLUS_3               9                29
D9V11, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              28                93
  CLUS_2              56               126
  CLUS_3              29               115
D9V12, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                 3
  CLUS_2              76               205
  CLUS_3              35               126

Clustering(10) Variable = 5q gain mutation analysis
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6               209
  CLUS_2              15               198
  CLUS_3              11               118
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              19               214
  CLUS_2               7               192
  CLUS_3               6               119
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              12               147
  CLUS_2               9               155
  CLUS_3              11               221
D10V4, multiclass
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8               158
  CLUS_2              15               189
  CLUS_3              11               188
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7               164
  CLUS_2              13               163
  CLUS_3              14               207
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3               117
  CLUS_2              15               181
  CLUS_3               5                77
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                55
  CLUS_2               5                79
  CLUS_3               9                99
  CLUS_4               7               142
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                93
  CLUS_2               3                64
  CLUS_3               2                89
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4               106
  CLUS_2               7               103
  CLUS_3               1                37
D10V11, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3               118
  CLUS_2              15               167
  CLUS_3               4               140
D10V12, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              17               264
  CLUS_3               5               156

Clustering(11) Variable = 6p gain mutation analysis
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              51               164
  CLUS_2              43               170
  CLUS_3              24               105
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              49               184
  CLUS_2              54               145
  CLUS_3              15               110
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              32               127
  CLUS_2              37               127
  CLUS_3              49               183
D11V4, multiclass
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              15               151
  CLUS_2              45               159
  CLUS_3              61               138
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              55               116
  CLUS_2              27               149
  CLUS_3              39               182
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              24                96
  CLUS_2              43               153
  CLUS_3              13                69
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              10                47
  CLUS_2              14                70
  CLUS_3              24                84
  CLUS_4              32               117
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              22                78
  CLUS_2              13                54
  CLUS_3              29                62
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              29                81
  CLUS_2              24                86
  CLUS_3              11                27
D11V11, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              28                93
  CLUS_2              34               148
  CLUS_3              37               107
D11V12, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                 3
  CLUS_2              55               226
  CLUS_3              42               119

Clustering(12) Variable = 6q gain mutation analysis
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              26               189
  CLUS_2              21               192
  CLUS_3              13               116
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              23               210
  CLUS_2              31               168
  CLUS_3               6               119
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              16               143
  CLUS_2              17               147
  CLUS_3              27               205
D12V4, multiclass
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5               161
  CLUS_2              21               183
  CLUS_3              36               163
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              34               137
  CLUS_2              10               166
  CLUS_3              18               203
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              13               107
  CLUS_2              25               171
  CLUS_3               4                78
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                50
  CLUS_2               8                76
  CLUS_3              13                95
  CLUS_4              14               135
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                90
  CLUS_2               3                64
  CLUS_3              20                71
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              18                92
  CLUS_2              12                98
  CLUS_3               3                35
D12V11, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              15               106
  CLUS_2              20               162
  CLUS_3              17               127
D12V12, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              30               251
  CLUS_3              21               140

Clustering(13) Variable = 7p gain mutation analysis
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              56               159
  CLUS_2              42               171
  CLUS_3              25               104
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              44               189
  CLUS_2              53               146
  CLUS_3              26                99
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              35               124
  CLUS_2              26               138
  CLUS_3              61               171
D13V4, multiclass
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              26               140
  CLUS_2              28               176
  CLUS_3              71               128
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              62               109
  CLUS_2              26               150
  CLUS_3              37               184
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              23                97
  CLUS_2              49               147
  CLUS_3              16                66
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                41
  CLUS_2              18                66
  CLUS_3              29                79
  CLUS_4              25               124
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              14                86
  CLUS_2               9                58
  CLUS_3              23                68
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              26                84
  CLUS_2              16                94
  CLUS_3               4                34
D13V11, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              24                97
  CLUS_2              39               143
  CLUS_3              29               115
D13V12, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               2                 3
  CLUS_2              55               226
  CLUS_3              35               126

Clustering(14) Variable = 7q gain mutation analysis
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              68               147
  CLUS_2              55               158
  CLUS_3              27               102
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              56               177
  CLUS_2              61               138
  CLUS_3              33                92
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              46               113
  CLUS_2              37               127
  CLUS_3              65               167
D14V4, multiclass
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              35               131
  CLUS_2              40               164
  CLUS_3              78               121
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              65               106
  CLUS_2              36               140
  CLUS_3              52               169
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              27                93
  CLUS_2              59               137
  CLUS_3              19                63
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              16                41
  CLUS_2              26                58
  CLUS_3              34                74
  CLUS_4              29               120
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18                82
  CLUS_2              10                57
  CLUS_3              24                67
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              27                83
  CLUS_2              21                89
  CLUS_3               4                34
D14V11, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              24                97
  CLUS_2              51               131
  CLUS_3              39               105
D14V12, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                 3
  CLUS_2              68               213
  CLUS_3              44               117

Clustering(15) Variable = 8p gain mutation analysis
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              37               178
  CLUS_2              27               186
  CLUS_3              22               107
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              32               201
  CLUS_2              39               160
  CLUS_3              15               110
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              24               135
  CLUS_2              25               139
  CLUS_3              37               195
D15V4, multiclass
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              20               146
  CLUS_2              37               167
  CLUS_3              29               170
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              25               146
  CLUS_2              28               148
  CLUS_3              33               188
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              17               103
  CLUS_2              26               170
  CLUS_3              13                69
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                48
  CLUS_2               8                76
  CLUS_3              12                96
  CLUS_4              27               122
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              14                86
  CLUS_2              13                54
  CLUS_3              12                79
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              21                89
  CLUS_2              12                98
  CLUS_3               6                32
D15V11, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              18               103
  CLUS_2              33               149
  CLUS_3              20               124
D15V12, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              50               231
  CLUS_3              21               140

Clustering(16) Variable = 8q gain mutation analysis
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              74               141
  CLUS_2              73               140
  CLUS_3              56                73
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              91               142
  CLUS_2              72               127
  CLUS_3              40                85
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              68                91
  CLUS_2              59               105
  CLUS_3              76               156
D16V4, multiclass
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              50               116
  CLUS_2              90               114
  CLUS_3              64               135
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              62               109
  CLUS_2              64               112
  CLUS_3              78               143
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              41                79
  CLUS_2              66               130
  CLUS_3              31                51
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              24                33
  CLUS_2              22                62
  CLUS_3              34                74
  CLUS_4              58                91
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              44                56
  CLUS_2              34                33
  CLUS_3              24                67
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              38                72
  CLUS_2              48                62
  CLUS_3              16                22
D16V11, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              48                73
  CLUS_2              67               115
  CLUS_3              52                92
D16V12, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                 3
  CLUS_2             108               173
  CLUS_3              57               104

Clustering(17) Variable = 9p gain mutation analysis
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               194
  CLUS_2              32               181
  CLUS_3               8               121
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              28               205
  CLUS_2              23               176
  CLUS_3              10               115
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               138
  CLUS_2              13               151
  CLUS_3              27               205
D17V4, multiclass
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               8               158
  CLUS_2              23               181
  CLUS_3              30               169
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              24               147
  CLUS_2              10               166
  CLUS_3              27               194
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              13               107
  CLUS_2              27               169
  CLUS_3               5                77
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               6                51
  CLUS_2               9                75
  CLUS_3              16                92
  CLUS_4              14               135
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              15                85
  CLUS_2               8                59
  CLUS_3              12                79
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              13                97
  CLUS_2              18                92
  CLUS_3               4                34
D17V11, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              12               109
  CLUS_2              27               155
  CLUS_3              12               132
D17V12, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              35               246
  CLUS_3              16               145

Clustering(18) Variable = 9q gain mutation analysis
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7               208
  CLUS_2              11               202
  CLUS_3               8               121
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15               218
  CLUS_2               7               192
  CLUS_3               4               121
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              11               148
  CLUS_2               9               155
  CLUS_3               6               226
D18V4, multiclass
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3               163
  CLUS_2              11               193
  CLUS_3              13               186
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6               165
  CLUS_2               6               170
  CLUS_3              15               206
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6               114
  CLUS_2              11               185
  CLUS_3               2                80
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                56
  CLUS_2               2                82
  CLUS_3               9                99
  CLUS_4               7               142
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                92
  CLUS_2               4                63
  CLUS_3               5                86
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3               107
  CLUS_2              12                98
  CLUS_3               2                36
D18V11, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7               114
  CLUS_2              10               172
  CLUS_3               6               138
D18V12, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              16               265
  CLUS_3               7               154

Clustering(19) Variable = 10p gain mutation analysis
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               65                150
  CLUS_2               38                175
  CLUS_3               29                100
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               54                179
  CLUS_2               64                135
  CLUS_3               14                111
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               37                122
  CLUS_2               36                128
  CLUS_3               58                174
D19V4, multiclass
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               20                146
  CLUS_2               36                168
  CLUS_3               76                123
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               57                114
  CLUS_2               34                142
  CLUS_3               41                180
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               25                 95
  CLUS_2               53                143
  CLUS_3               16                 66
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                9                 48
  CLUS_2               20                 64
  CLUS_3               29                 79
  CLUS_4               36                113
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               24                 76
  CLUS_2                8                 59
  CLUS_3               29                 62
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               25                 85
  CLUS_2               28                 82
  CLUS_3                8                 30
D19V11, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               26                 95
  CLUS_2               48                134
  CLUS_3               31                113
D19V12, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               67                214
  CLUS_3               37                124

Clustering(20) Variable = 10q gain mutation analysis
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               38                177
  CLUS_2               20                193
  CLUS_3               10                119
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               25                208
  CLUS_2               36                163
  CLUS_3                7                118
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               20                139
  CLUS_2               19                145
  CLUS_3               29                203
D20V4, multiclass
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                154
  CLUS_2               22                182
  CLUS_3               34                165
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               29                142
  CLUS_2               21                155
  CLUS_3               18                203
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               15                105
  CLUS_2               28                168
  CLUS_3                6                 76
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                 53
  CLUS_2               13                 71
  CLUS_3               14                 94
  CLUS_4               18                131
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               11                 89
  CLUS_2                4                 63
  CLUS_3               16                 75
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               16                 94
  CLUS_2               13                 97
  CLUS_3                2                 36
D20V11, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               10                111
  CLUS_2               24                158
  CLUS_3               18                126
D20V12, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               30                251
  CLUS_3               22                139

Clustering(21) Variable = 11p gain mutation analysis
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               18                197
  CLUS_2               17                196
  CLUS_3                5                124
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               13                220
  CLUS_2               16                183
  CLUS_3               11                114
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                8                151
  CLUS_2               10                154
  CLUS_3               22                210
D21V4, multiclass
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                161
  CLUS_2               18                186
  CLUS_3               17                182
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               17                154
  CLUS_2                5                171
  CLUS_3               18                203
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                118
  CLUS_2               17                179
  CLUS_3                3                 79
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 53
  CLUS_2               11                 73
  CLUS_3                4                104
  CLUS_4                3                146
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               11                 89
  CLUS_2                6                 61
  CLUS_3                2                 89
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                105
  CLUS_2               11                 99
  CLUS_3                3                 35
D21V11, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                7                114
  CLUS_2               18                164
  CLUS_3                6                138
D21V12, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               22                259
  CLUS_3                8                153

Clustering(22) Variable = 11q gain mutation analysis
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               22                193
  CLUS_2               28                185
  CLUS_3               11                118
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               23                210
  CLUS_2               23                176
  CLUS_3               15                110
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               17                142
  CLUS_2               17                147
  CLUS_3               27                205
D22V4, multiclass
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                161
  CLUS_2               32                172
  CLUS_3               25                174
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               23                148
  CLUS_2                7                169
  CLUS_3               32                189
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                111
  CLUS_2               23                173
  CLUS_3                6                 76
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 53
  CLUS_2               12                 72
  CLUS_3                9                 99
  CLUS_4               13                136
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               14                 86
  CLUS_2               11                 56
  CLUS_3               10                 81
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               11                 99
  CLUS_2               16                 94
  CLUS_3                8                 30
D22V11, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                112
  CLUS_2               24                158
  CLUS_3               17                127
D22V12, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               29                252
  CLUS_3               20                141

Clustering(23) Variable = 12p gain mutation analysis
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1              102                113
  CLUS_2               60                153
  CLUS_3               40                 89
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               70                163
  CLUS_2               98                101
  CLUS_3               34                 91
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               51                108
  CLUS_2               66                 98
  CLUS_3               84                148
D23V4, multiclass
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               38                128
  CLUS_2               56                148
  CLUS_3              114                 85
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               95                 76
  CLUS_2               56                120
  CLUS_3               57                164
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               40                 80
  CLUS_2               76                120
  CLUS_3               25                 57
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               19                 38
  CLUS_2               31                 53
  CLUS_3               35                 73
  CLUS_4               56                 93
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               23                 77
  CLUS_2               20                 47
  CLUS_3               50                 41
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               55                 55
  CLUS_2               29                 81
  CLUS_3                9                 29
D23V11, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               42                 79
  CLUS_2               58                124
  CLUS_3               60                 84
D23V12, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               92                189
  CLUS_3               66                 95

Clustering(24) Variable = 12q gain mutation analysis
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               63                152
  CLUS_2               35                178
  CLUS_3               19                110
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               34                199
  CLUS_2               65                134
  CLUS_3               18                107
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               34                125
  CLUS_2               30                134
  CLUS_3               53                179
D24V4, multiclass
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               24                142
  CLUS_2               18                186
  CLUS_3               80                119
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               59                112
  CLUS_2               28                148
  CLUS_3               35                186
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               21                 99
  CLUS_2               49                147
  CLUS_3                8                 74
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 48
  CLUS_2               17                 67
  CLUS_3               25                 83
  CLUS_4               27                122
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               13                 87
  CLUS_2               15                 52
  CLUS_3               33                 58
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               38                 72
  CLUS_2               17                 93
  CLUS_3                6                 32
D24V11, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               21                100
  CLUS_2               32                150
  CLUS_3               38                106
D24V12, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               49                232
  CLUS_3               41                120

Clustering(25) Variable = 13q gain mutation analysis
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               19                196
  CLUS_2                7                206
  CLUS_3               13                116
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               14                219
  CLUS_2               19                180
  CLUS_3                6                119
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               11                148
  CLUS_2               10                154
  CLUS_3               17                215
D25V4, multiclass
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               14                152
  CLUS_2                6                198
  CLUS_3               21                178
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               23                148
  CLUS_2               12                164
  CLUS_3                6                215
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                8                112
  CLUS_2               11                185
  CLUS_3                6                 76
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                 52
  CLUS_2                2                 82
  CLUS_3                8                100
  CLUS_4               10                139
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                 93
  CLUS_2                3                 64
  CLUS_3                9                 82
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                9                101
  CLUS_2                8                102
  CLUS_3                2                 36
D25V11, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               11                110
  CLUS_2                9                173
  CLUS_3               12                132
D25V12, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               18                263
  CLUS_3               14                147

Clustering(26) Variable = 14q gain mutation analysis
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               21                194
  CLUS_2                6                207
  CLUS_3                7                122
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                223
  CLUS_2               19                180
  CLUS_3                5                120
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                8                151
  CLUS_2               14                150
  CLUS_3               12                220
D26V4, multiclass
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                156
  CLUS_2               13                191
  CLUS_3               11                188
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               15                156
  CLUS_2                9                167
  CLUS_3               10                211
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                116
  CLUS_2               17                179
  CLUS_3                2                 80
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                5                 52
  CLUS_2               10                 74
  CLUS_3                5                103
  CLUS_4                3                146
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 96
  CLUS_2                5                 62
  CLUS_3                9                 82
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               13                 97
  CLUS_2                4                106
  CLUS_3                1                 37
D26V11, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                115
  CLUS_2                8                174
  CLUS_3               11                133
D26V12, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                267
  CLUS_3               11                150

Clustering(27) Variable = 15q gain mutation analysis
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                206
  CLUS_2               12                201
  CLUS_3                3                126
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                223
  CLUS_2                7                192
  CLUS_3                7                118
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                149
  CLUS_2                5                159
  CLUS_3                9                223
D27V4, multiclass
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                161
  CLUS_2               13                191
  CLUS_3                7                192
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                165
  CLUS_2                7                169
  CLUS_3               12                209
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                4                116
  CLUS_2               12                184
  CLUS_3                1                 81
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                5                 79
  CLUS_3                5                103
  CLUS_4                5                144
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 97
  CLUS_2                2                 65
  CLUS_3                3                 88
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                107
  CLUS_2                4                106
  CLUS_3                1                 37
D27V11, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                118
  CLUS_2                7                175
  CLUS_3                7                137
D27V12, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                9                272
  CLUS_3                8                153

Clustering(28) Variable = 16p gain mutation analysis
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               19                196
  CLUS_2                8                205
  CLUS_3                4                125
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                227
  CLUS_2               16                183
  CLUS_3                9                116
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                9                150
  CLUS_2               10                154
  CLUS_3               12                220
D28V4, multiclass
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                160
  CLUS_2                9                195
  CLUS_3               16                183
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               14                157
  CLUS_2                6                170
  CLUS_3               11                210
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                116
  CLUS_2               11                185
  CLUS_3                4                 78
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                5                 79
  CLUS_3                9                 99
  CLUS_4                3                146
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 97
  CLUS_2                2                 65
  CLUS_3                3                 88
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                106
  CLUS_2                3                107
  CLUS_3                1                 37
D28V11, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                116
  CLUS_2                9                173
  CLUS_3                8                136
D28V12, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               12                269
  CLUS_3               10                151

Clustering(29) Variable = 16q gain mutation analysis
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               11                204
  CLUS_2                5                208
  CLUS_3                0                129
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                232
  CLUS_2                6                193
  CLUS_3                9                116
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                156
  CLUS_2                8                156
  CLUS_3                5                227
D29V4, multiclass
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                161
  CLUS_2                4                200
  CLUS_3                7                192
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                166
  CLUS_2                1                175
  CLUS_3               10                211
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                118
  CLUS_2                8                188
  CLUS_3                2                 80
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                6                 78
  CLUS_3                3                105
  CLUS_4                2                147
D29V9, multiclass
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                256 
        TCGA-04-1348         TCGA-04-1357         TCGA-04-1362 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1364         TCGA-04-1365         TCGA-04-1514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1519         TCGA-09-0366         TCGA-09-0367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-0369         TCGA-09-1662         TCGA-09-1666 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1673         TCGA-09-1674 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2051         TCGA-09-2054         TCGA-09-2056 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0928         TCGA-10-0936         TCGA-13-0730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0799         TCGA-13-0800         TCGA-13-0801 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0890         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0913         TCGA-13-0916 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0920         TCGA-13-0924         TCGA-13-1403 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1405         TCGA-13-1410         TCGA-13-1481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2060         TCGA-20-1682 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1683         TCGA-20-1684         TCGA-20-1685 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1023         TCGA-23-1026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1029         TCGA-23-1109 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1111         TCGA-23-1114         TCGA-23-1120 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1122         TCGA-23-1123         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2077         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-1103         TCGA-24-1413 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1416         TCGA-24-1417         TCGA-24-1418 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1419         TCGA-24-1423         TCGA-24-1424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1427         TCGA-24-1428         TCGA-24-1430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1436         TCGA-24-1467         TCGA-24-1469 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1474         TCGA-24-1544         TCGA-24-1548 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1567         TCGA-24-1603 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1846         TCGA-24-1847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1850         TCGA-24-1924         TCGA-24-1930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2033         TCGA-24-2035         TCGA-24-2036 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2038         TCGA-24-2254         TCGA-24-2261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2281         TCGA-24-2288         TCGA-24-2290 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2297         TCGA-24-2298         TCGA-25-1312 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1313         TCGA-25-1314         TCGA-25-1315 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1316         TCGA-25-1317         TCGA-25-1318 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1319         TCGA-25-1321         TCGA-25-1322 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1323         TCGA-25-1329         TCGA-25-1623 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1625         TCGA-25-1627         TCGA-25-1630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1631         TCGA-25-1632         TCGA-25-1633 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1634         TCGA-25-1635         TCGA-25-1870 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1871         TCGA-25-2391         TCGA-25-2392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2393         TCGA-25-2396         TCGA-25-2397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2399         TCGA-25-2400         TCGA-25-2404 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2409         TCGA-29-1688         TCGA-29-1690 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1691         TCGA-29-1693         TCGA-29-1694 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1695         TCGA-29-1696         TCGA-29-1697 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1699         TCGA-29-1701         TCGA-29-1702 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1703         TCGA-29-1705         TCGA-29-1710 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1770         TCGA-29-1776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1778         TCGA-29-1781         TCGA-29-1783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1784         TCGA-29-1785         TCGA-29-2414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1718         TCGA-30-1855         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1862         TCGA-30-1891         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1951         TCGA-31-1953         TCGA-31-1956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1568         TCGA-36-1570         TCGA-36-1571 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1574         TCGA-36-1575         TCGA-36-1577 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1582         TCGA-57-1583         TCGA-57-1584 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1993         TCGA-57-1994         TCGA-59-2348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-61-1721 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1728 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1733         TCGA-61-1736         TCGA-61-1738 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1907         TCGA-61-1910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1917         TCGA-61-1918 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2008         TCGA-61-2009 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2098         TCGA-61-2102         TCGA-61-2104 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2113 
"16Q GAIN WILD-TYPE" 
D29V10, multiclass
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                256 
        TCGA-04-1348         TCGA-04-1357         TCGA-04-1362 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1364         TCGA-04-1365         TCGA-04-1514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1519         TCGA-09-0366         TCGA-09-0367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-0369         TCGA-09-1662         TCGA-09-1666 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1673         TCGA-09-1674 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2051         TCGA-09-2054         TCGA-09-2056 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0928         TCGA-10-0936         TCGA-13-0730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0799         TCGA-13-0800         TCGA-13-0801 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0890         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0913         TCGA-13-0916 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0920         TCGA-13-0924         TCGA-13-1403 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1405         TCGA-13-1410         TCGA-13-1481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2060         TCGA-20-1682 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1683         TCGA-20-1684         TCGA-20-1685 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1023         TCGA-23-1026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1029         TCGA-23-1109 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1111         TCGA-23-1114         TCGA-23-1120 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1122         TCGA-23-1123         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2077         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-1103         TCGA-24-1413 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1416         TCGA-24-1417         TCGA-24-1418 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1419         TCGA-24-1423         TCGA-24-1424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1427         TCGA-24-1428         TCGA-24-1430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1436         TCGA-24-1467         TCGA-24-1469 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1474         TCGA-24-1544         TCGA-24-1548 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1567         TCGA-24-1603 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1846         TCGA-24-1847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1850         TCGA-24-1924         TCGA-24-1930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2033         TCGA-24-2035         TCGA-24-2036 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2038         TCGA-24-2254         TCGA-24-2261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2281         TCGA-24-2288         TCGA-24-2290 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2297         TCGA-24-2298         TCGA-25-1312 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1313         TCGA-25-1314         TCGA-25-1315 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1316         TCGA-25-1317         TCGA-25-1318 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1319         TCGA-25-1321         TCGA-25-1322 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1323         TCGA-25-1329         TCGA-25-1623 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1625         TCGA-25-1627         TCGA-25-1630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1631         TCGA-25-1632         TCGA-25-1633 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1634         TCGA-25-1635         TCGA-25-1870 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1871         TCGA-25-2391         TCGA-25-2392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2393         TCGA-25-2396         TCGA-25-2397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2399         TCGA-25-2400         TCGA-25-2404 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2409         TCGA-29-1688         TCGA-29-1690 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1691         TCGA-29-1693         TCGA-29-1694 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1695         TCGA-29-1696         TCGA-29-1697 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1699         TCGA-29-1701         TCGA-29-1702 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1703         TCGA-29-1705         TCGA-29-1710 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1770         TCGA-29-1776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1778         TCGA-29-1781         TCGA-29-1783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1784         TCGA-29-1785         TCGA-29-2414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1718         TCGA-30-1855         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1862         TCGA-30-1891         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1951         TCGA-31-1953         TCGA-31-1956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1568         TCGA-36-1570         TCGA-36-1571 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1574         TCGA-36-1575         TCGA-36-1577 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1582         TCGA-57-1583         TCGA-57-1584 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1993         TCGA-57-1994         TCGA-59-2348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-61-1721 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1728 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1733         TCGA-61-1736         TCGA-61-1738 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1907         TCGA-61-1910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1917         TCGA-61-1918 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2008         TCGA-61-2009 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2098         TCGA-61-2102         TCGA-61-2104 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2113 
"16Q GAIN WILD-TYPE" 
D29V11, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                121
  CLUS_2                5                177
  CLUS_3                5                139
D29V12, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                4                277
  CLUS_3                6                155

Clustering(30) Variable = 17p gain mutation analysis
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                6                209
  CLUS_2                3                210
  CLUS_3                1                128
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                229
  CLUS_2                6                193
  CLUS_3                0                125
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                158
  CLUS_2                4                160
  CLUS_3                5                227
D30V4, multiclass
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                166
  CLUS_2                6                198
  CLUS_3                5                194
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                5                166
  CLUS_2                2                174
  CLUS_3                4                217
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                117
  CLUS_2                5                191
  CLUS_3                0                 82
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 57
  CLUS_2                2                 82
  CLUS_3                2                106
  CLUS_4                4                145
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 98
  CLUS_2                1                 66
  CLUS_3                5                 86
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                5                105
  CLUS_2                2                108
  CLUS_3                1                 37
D30V11, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                120
  CLUS_2                4                178
  CLUS_3                4                140
D30V12, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                4                277
  CLUS_3                5                156

Clustering(31) Variable = 17q gain mutation analysis
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                208
  CLUS_2                9                204
  CLUS_3                6                123
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               10                223
  CLUS_2               10                189
  CLUS_3                2                123
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                156
  CLUS_2                8                156
  CLUS_3               11                221
D31V4, multiclass
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                164
  CLUS_2               11                193
  CLUS_3               10                189
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                8                163
  CLUS_2                4                172
  CLUS_3               11                210
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                113
  CLUS_2                9                187
  CLUS_3                2                 80
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                3                 81
  CLUS_3                6                102
  CLUS_4                7                142
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 96
  CLUS_2                5                 62
  CLUS_3                4                 87
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                103
  CLUS_2                4                106
  CLUS_3                2                 36
D31V11, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                117
  CLUS_2                7                175
  CLUS_3                8                136
D31V12, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               10                271
  CLUS_3                9                152

Clustering(32) Variable = 18p gain mutation analysis
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               38                177
  CLUS_2               26                187
  CLUS_3                8                121
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               20                213
  CLUS_2               40                159
  CLUS_3               12                113
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               22                137
  CLUS_2               22                142
  CLUS_3               28                204
D32V4, multiclass
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               14                152
  CLUS_2               20                184
  CLUS_3               40                159
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               38                133
  CLUS_2               12                164
  CLUS_3               24                197
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               12                108
  CLUS_2               37                159
  CLUS_3                4                 78
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 48
  CLUS_2               16                 68
  CLUS_3               16                 92
  CLUS_4               12                137
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               10                 90
  CLUS_2                7                 60
  CLUS_3               14                 77
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               16                 94
  CLUS_2               11                 99
  CLUS_3                4                 34
D32V11, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               10                111
  CLUS_2               26                156
  CLUS_3               19                125
D32V12, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               32                249
  CLUS_3               23                138

Clustering(33) Variable = 18q gain mutation analysis
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               14                201
  CLUS_2               20                193
  CLUS_3                6                123
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               16                217
  CLUS_2               17                182
  CLUS_3                7                118
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                149
  CLUS_2               15                149
  CLUS_3               15                217
D33V4, multiclass
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                8                158
  CLUS_2               11                193
  CLUS_3               22                177
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               20                151
  CLUS_2                7                169
  CLUS_3               14                207
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                111
  CLUS_2               16                180
  CLUS_3                2                 80
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 52
  CLUS_2                5                 79
  CLUS_3               10                 98
  CLUS_4                7                142
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                 90
  CLUS_2                4                 63
  CLUS_3                6                 85
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                104
  CLUS_2               10                100
  CLUS_3                4                 34
D33V11, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                115
  CLUS_2               18                164
  CLUS_3                7                137
D33V12, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               21                260
  CLUS_3               10                151

Clustering(34) Variable = 19p gain mutation analysis
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               49                166
  CLUS_2               34                179
  CLUS_3               15                114
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               30                203
  CLUS_2               46                153
  CLUS_3               22                103
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               30                129
  CLUS_2               25                139
  CLUS_3               42                190
D34V4, multiclass
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               17                149
  CLUS_2               21                183
  CLUS_3               61                138
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               44                127
  CLUS_2               18                158
  CLUS_3               37                184
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               17                103
  CLUS_2               47                149
  CLUS_3                9                 73
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               11                 46
  CLUS_2               18                 66
  CLUS_3               24                 84
  CLUS_4               20                129
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               21                 79
  CLUS_2               11                 56
  CLUS_3               16                 75
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               19                 91
  CLUS_2               21                 89
  CLUS_3                8                 30
D34V11, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               18                103
  CLUS_2               34                148
  CLUS_3               26                118
D34V12, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               47                234
  CLUS_3               29                132

Clustering(35) Variable = 19q gain mutation analysis
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               47                168
  CLUS_2               28                185
  CLUS_3               16                113
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               32                201
  CLUS_2               43                156
  CLUS_3               16                109
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               25                134
  CLUS_2               23                141
  CLUS_3               41                191
D35V4, multiclass
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               15                151
  CLUS_2               22                182
  CLUS_3               55                144
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               44                127
  CLUS_2               19                157
  CLUS_3               29                192
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               15                105
  CLUS_2               45                151
  CLUS_3               10                 72
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                9                 48
  CLUS_2               17                 67
  CLUS_3               24                 84
  CLUS_4               20                129
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                 80
  CLUS_2                9                 58
  CLUS_3               16                 75
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                 90
  CLUS_2               21                 89
  CLUS_3                4                 34
D35V11, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               15                106
  CLUS_2               34                148
  CLUS_3               25                119
D35V12, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               43                238
  CLUS_3               29                132

Clustering(36) Variable = 20p gain mutation analysis
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1              107                108
  CLUS_2               70                143
  CLUS_3               52                 77
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               90                143
  CLUS_2              108                 91
  CLUS_3               31                 94
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               58                101
  CLUS_2               65                 99
  CLUS_3              105                127
D36V4, multiclass
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               43                123
  CLUS_2               64                140
  CLUS_3              127                 72
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1              109                 62
  CLUS_2               61                115
  CLUS_3               64                157
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               48                 72
  CLUS_2               88                108
  CLUS_3               29                 53
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               22                 35
  CLUS_2               30                 54
  CLUS_3               48                 60
  CLUS_4               65                 84
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               33                 67
  CLUS_2               25                 42
  CLUS_3               51                 40
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               51                 59
  CLUS_2               39                 71
  CLUS_3               19                 19
D36V11, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               55                 66
  CLUS_2               77                105
  CLUS_3               56                 88
D36V12, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  3
  CLUS_2              118                163
  CLUS_3               68                 93

Clustering(37) Variable = 20q gain mutation analysis
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              127                 88
  CLUS_2               78                135
  CLUS_3               62                 67
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              110                123
  CLUS_2              129                 70
  CLUS_3               28                 97
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               72                 87
  CLUS_2               76                 88
  CLUS_3              118                114
D37V4, multiclass
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               46                120
  CLUS_2               80                124
  CLUS_3              147                 52
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              128                 43
  CLUS_2               70                106
  CLUS_3               75                146
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               55                 65
  CLUS_2               99                 97
  CLUS_3               35                 47
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               25                 32
  CLUS_2               32                 52
  CLUS_3               54                 54
  CLUS_4               78                 71
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               41                 59
  CLUS_2               27                 40
  CLUS_3               57                 34
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               58                 52
  CLUS_2               48                 62
  CLUS_3               19                 19
D37V11, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               66                 55
  CLUS_2               86                 96
  CLUS_3               67                 77
D37V12, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                3                  2
  CLUS_2              136                145
  CLUS_3               80                 81

Clustering(38) Variable = 21q gain mutation analysis
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               26                189
  CLUS_2               23                190
  CLUS_3               18                111
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               32                201
  CLUS_2               28                171
  CLUS_3                7                118
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               19                140
  CLUS_2               19                145
  CLUS_3               29                203
D38V4, multiclass
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                156
  CLUS_2               17                187
  CLUS_3               43                156
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               36                135
  CLUS_2               12                164
  CLUS_3               22                199
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                110
  CLUS_2               28                168
  CLUS_3               10                 72
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                 52
  CLUS_2                9                 75
  CLUS_3               19                 89
  CLUS_4               15                134
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                 92
  CLUS_2                6                 61
  CLUS_3               13                 78
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 95
  CLUS_2               11                 99
  CLUS_3                1                 37
D38V11, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               18                103
  CLUS_2               19                163
  CLUS_3               12                132
D38V12, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               34                247
  CLUS_3               15                146

Clustering(39) Variable = 22q gain mutation analysis
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                212
  CLUS_2                2                211
  CLUS_3                4                125
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                229
  CLUS_2                4                195
  CLUS_3                1                124
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                157
  CLUS_2                4                160
  CLUS_3                3                229
D39V4, multiclass
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                165
  CLUS_2                6                198
  CLUS_3                2                197
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                168
  CLUS_2                2                174
  CLUS_3                4                217
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                119
  CLUS_2                2                194
  CLUS_3                2                 80
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                0                 84
  CLUS_3                2                106
  CLUS_4                2                147
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 99
  CLUS_2                1                 66
  CLUS_3                2                 89
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                108
  CLUS_2                2                108
  CLUS_3                0                 38
D39V11, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                5                116
  CLUS_2                1                181
  CLUS_3                1                143
D39V12, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                6                275
  CLUS_3                1                160

Clustering(40) Variable = Xq gain mutation analysis
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              17               198
  CLUS_2              13               200
  CLUS_3               4               125
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7               226
  CLUS_2              17               182
  CLUS_3              10               115
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              10               149
  CLUS_2               9               155
  CLUS_3              15               217
D40V4, multiclass
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7               159
  CLUS_2               7               197
  CLUS_3              20               179
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16               155
  CLUS_2               8               168
  CLUS_3              10               211
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3               117
  CLUS_2              17               179
  CLUS_3               5                77
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                54
  CLUS_2               4                80
  CLUS_3              11                97
  CLUS_4               7               142
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                96
  CLUS_2               4                63
  CLUS_3               8                83
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               9               101
  CLUS_2               6               104
  CLUS_3               1                37
D40V11, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4               117
  CLUS_2              15               167
  CLUS_3               8               136
D40V12, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              16               265
  CLUS_3              11               150

Clustering(41) Variable = 1p loss mutation analysis
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              23               192
  CLUS_2               8               205
  CLUS_3               4               125
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9               224
  CLUS_2              21               178
  CLUS_3               5               120
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9               150
  CLUS_2               7               157
  CLUS_3              19               213
D41V4, multiclass
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               154
  CLUS_2              12               192
  CLUS_3              11               188
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               159
  CLUS_2              14               162
  CLUS_3               9               212
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              10               110
  CLUS_2              11               185
  CLUS_3               7                75
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2               3                81
  CLUS_3               9                99
  CLUS_4              11               138
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                96
  CLUS_2               4                63
  CLUS_3               6                85
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9               101
  CLUS_2               4               106
  CLUS_3               1                37
D41V11, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7               114
  CLUS_2              11               171
  CLUS_3               9               135
D41V12, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              17               264
  CLUS_3              10               151

Clustering(42) Variable = 1q loss mutation analysis
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              15               200
  CLUS_2               5               208
  CLUS_3               2               127
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6               227
  CLUS_2              15               184
  CLUS_3               1               124
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5               154
  CLUS_2               1               163
  CLUS_3              16               216
D42V4, multiclass
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4               162
  CLUS_2              11               193
  CLUS_3               7               192
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               8               163
  CLUS_2               8               168
  CLUS_3               6               215
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4               116
  CLUS_2               8               188
  CLUS_3               5                77
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2               2                82
  CLUS_3               6               102
  CLUS_4               4               145
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                96
  CLUS_2               2                65
  CLUS_3               5                86
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               8               102
  CLUS_2               3               107
  CLUS_3               0                38
D42V11, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2               119
  CLUS_2               9               173
  CLUS_3               7               137
D42V12, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              11               270
  CLUS_3               7               154

Clustering(43) Variable = 2p loss mutation analysis
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               9               206
  CLUS_2              12               201
  CLUS_3               5               124
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12               221
  CLUS_2               8               191
  CLUS_3               6               119
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7               152
  CLUS_2               7               157
  CLUS_3              12               220
D43V4, multiclass
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6               160
  CLUS_2              12               192
  CLUS_3               8               191
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               166
  CLUS_2               8               168
  CLUS_3              13               208
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3               117
  CLUS_2              12               184
  CLUS_3               4                78
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                54
  CLUS_2               6                78
  CLUS_3               5               103
  CLUS_4               5               144
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                95
  CLUS_2               7                60
  CLUS_3               3                88
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4               106
  CLUS_2               7               103
  CLUS_3               4                34
D43V11, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               116
  CLUS_2              11               171
  CLUS_3               8               136
D43V12, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              16               265
  CLUS_3               7               154

Clustering(44) Variable = 2q loss mutation analysis
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              10               205
  CLUS_2              13               200
  CLUS_3               7               122
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              15               218
  CLUS_2               8               191
  CLUS_3               7               118
D44V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7               152
  CLUS_2               9               155
  CLUS_3              14               218
D44V4, multiclass
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6               160
  CLUS_2              12               192
  CLUS_3              12               187
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6               165
  CLUS_2               7               169
  CLUS_3              17               204
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4               116
  CLUS_2              15               181
  CLUS_3               4                78
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2                55
  CLUS_2               6                78
  CLUS_3               8               100
  CLUS_4               7               142
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                94
  CLUS_2               6                61
  CLUS_3               4                87
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4               106
  CLUS_2               8               102
  CLUS_3               4                34
D44V11, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9               112
  CLUS_2              11               171
  CLUS_3               7               137
D44V12, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              20               261
  CLUS_3               6               155

Clustering(45) Variable = 3p loss mutation analysis
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              30               185
  CLUS_2              15               198
  CLUS_3              15               114
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              24               209
  CLUS_2              30               169
  CLUS_3               6               119
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              17               142
  CLUS_2              19               145
  CLUS_3              24               208
D45V4, multiclass
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14               152
  CLUS_2              14               190
  CLUS_3              33               166
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              25               146
  CLUS_2              17               159
  CLUS_3              18               203
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              10               110
  CLUS_2              19               177
  CLUS_3               6                76
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                54
  CLUS_2               4                80
  CLUS_3              13                95
  CLUS_4              15               134
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9                91
  CLUS_2               2                65
  CLUS_3              15                76
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14                96
  CLUS_2              10               100
  CLUS_3               2                36
D45V11, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              18               103
  CLUS_2              17               165
  CLUS_3              12               132
D45V12, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              30               251
  CLUS_3              16               145

Clustering(46) Variable = 3q loss mutation analysis
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              12               203
  CLUS_2               5               208
  CLUS_3               6               123
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               8               225
  CLUS_2              13               186
  CLUS_3               2               123
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               152
  CLUS_2               7               157
  CLUS_3               9               223
D46V4, multiclass
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6               160
  CLUS_2               5               199
  CLUS_3              12               187
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11               160
  CLUS_2               5               171
  CLUS_3               7               214
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6               114
  CLUS_2               6               190
  CLUS_3               2                80
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                56
  CLUS_2               2                82
  CLUS_3               3               105
  CLUS_4               8               141
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5                95
  CLUS_2               0                67
  CLUS_3               6                85
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               103
  CLUS_2               4               106
  CLUS_3               0                38
D46V11, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               114
  CLUS_2               6               176
  CLUS_3               4               140
D46V12, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              12               269
  CLUS_3               5               156

Clustering(47) Variable = 4p loss mutation analysis
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1             109               106
  CLUS_2              96               117
  CLUS_3              50                79
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              96               137
  CLUS_2              92               107
  CLUS_3              67                58
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              78                81
  CLUS_2              70                94
  CLUS_3             106               126
D47V4, multiclass
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              82                84
  CLUS_2              79               125
  CLUS_3             101                98
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              78                93
  CLUS_2              84                92
  CLUS_3             100               121
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              57                63
  CLUS_2              87               109
  CLUS_3              28                54
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              19                38
  CLUS_2              43                41
  CLUS_3              49                59
  CLUS_4              61                88
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              48                52
  CLUS_2              22                45
  CLUS_3              39                52
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              42                68
  CLUS_2              47                63
  CLUS_3              20                18
D47V11, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              43                78
  CLUS_2              82               100
  CLUS_3              74                70
D47V12, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2             116               165
  CLUS_3              83                78

Clustering(48) Variable = 4q loss mutation analysis
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1             127                88
  CLUS_2             107               106
  CLUS_3              60                69
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1             107               126
  CLUS_2             113                86
  CLUS_3              74                51
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              86                73
  CLUS_2              78                86
  CLUS_3             129               103
D48V4, multiclass
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              95                71
  CLUS_2              91               113
  CLUS_3             116                83
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              92                79
  CLUS_2              96                80
  CLUS_3             113               108
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              66                54
  CLUS_2             108                88
  CLUS_3              37                45
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              25                32
  CLUS_2              51                33
  CLUS_3              63                45
  CLUS_4              72                77
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              49                51
  CLUS_2              33                34
  CLUS_3              52                39
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              59                51
  CLUS_2              49                61
  CLUS_3              26                12
D48V11, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              53                68
  CLUS_2              96                86
  CLUS_3              85                59
D48V12, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2             133               148
  CLUS_3             101                60

Clustering(49) Variable = 5p loss mutation analysis
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              38               177
  CLUS_2              30               183
  CLUS_3              16               113
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              28               205
  CLUS_2              39               160
  CLUS_3              17               108
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              21               138
  CLUS_2              32               132
  CLUS_3              31               201
D49V4, multiclass
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              19               147
  CLUS_2              24               180
  CLUS_3              42               157
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              37               134
  CLUS_2              16               160
  CLUS_3              32               189
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              14               106
  CLUS_2              35               161
  CLUS_3               9                73
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              10                47
  CLUS_2              18                66
  CLUS_3              12                96
  CLUS_4              18               131
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              12                88
  CLUS_2               5                62
  CLUS_3              27                64
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              22                88
  CLUS_2              16                94
  CLUS_3               6                32
D49V11, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              20               101
  CLUS_2              27               155
  CLUS_3              23               121
D49V12, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              42               239
  CLUS_3              27               134

Clustering(50) Variable = 5q loss mutation analysis
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              87               128
  CLUS_2              55               158
  CLUS_3              27               102
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              51               182
  CLUS_2              84               115
  CLUS_3              34                91
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              44               115
  CLUS_2              51               113
  CLUS_3              74               158
D50V4, multiclass
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              38               128
  CLUS_2              52               152
  CLUS_3              82               117
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              79                92
  CLUS_2              34               142
  CLUS_3              59               162
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              26                94
  CLUS_2              68               128
  CLUS_3              16                66
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              16                41
  CLUS_2              31                53
  CLUS_3              32                76
  CLUS_4              31               118
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              25                75
  CLUS_2              16                51
  CLUS_3              44                47
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              42                68
  CLUS_2              31                79
  CLUS_3              12                26
D50V11, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              33                88
  CLUS_2              60               122
  CLUS_3              47                97
D50V12, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              84               197
  CLUS_3              55               106

Clustering(51) Variable = 6p loss mutation analysis
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              46               169
  CLUS_2              49               164
  CLUS_3              28               101
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              50               183
  CLUS_2              36               163
  CLUS_3              37                88
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              38               121
  CLUS_2              33               131
  CLUS_3              52               180
D51V4, multiclass
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              45               121
  CLUS_2              42               162
  CLUS_3              39               160
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              27               144
  CLUS_2              44               132
  CLUS_3              55               166
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              26                94
  CLUS_2              50               146
  CLUS_3              13                69
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              11                46
  CLUS_2              22                62
  CLUS_3              28                80
  CLUS_4              28               121
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              23                77
  CLUS_2              15                52
  CLUS_3              15                76
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              21                89
  CLUS_2              25                85
  CLUS_3               7                31
D51V11, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              21               100
  CLUS_2              48               134
  CLUS_3              31               113
D51V12, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              63               218
  CLUS_3              36               125

Clustering(52) Variable = 6q loss mutation analysis
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              74               141
  CLUS_2              73               140
  CLUS_3              46                83
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              80               153
  CLUS_2              58               141
  CLUS_3              55                70
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              53               106
  CLUS_2              60               104
  CLUS_3              81               151
D52V4, multiclass
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              68                98
  CLUS_2              71               133
  CLUS_3              59               140
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              46               125
  CLUS_2              63               113
  CLUS_3              89               132
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              41                79
  CLUS_2              71               125
  CLUS_3              19                63
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              19                38
  CLUS_2              28                56
  CLUS_3              40                68
  CLUS_4              44               105
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              33                67
  CLUS_2              25                42
  CLUS_3              21                70
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              29                81
  CLUS_2              34                76
  CLUS_3              16                22
D52V11, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              33                88
  CLUS_2              67               115
  CLUS_3              50                94
D52V12, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              93               188
  CLUS_3              56               105

Clustering(53) Variable = 7p loss mutation analysis
D53V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              35               180
  CLUS_2              31               182
  CLUS_3              24               105
D53V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              37               196
  CLUS_2              38               161
  CLUS_3              15               110
D53V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              20               139
  CLUS_2              33               131
  CLUS_3              37               195
D53V4, multiclass
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              19               147
  CLUS_2              41               163
  CLUS_3              31               168
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              28               143
  CLUS_2              35               141
  CLUS_3              28               193
D53V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              16               104
  CLUS_2              38               158
  CLUS_3              14                68
D53V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              10                47
  CLUS_2              15                69
  CLUS_3              15                93
  CLUS_4              28               121
D53V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              22                78
  CLUS_2              13                54
  CLUS_3              20                71
D53V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              22                88
  CLUS_2              30                80
  CLUS_3               3                35
D53V11, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              29                92
  CLUS_2              22               160
  CLUS_3              25               119
D53V12, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              50               231
  CLUS_3              26               135

Clustering(54) Variable = 7q loss mutation analysis
D54V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              20               195
  CLUS_2              14               199
  CLUS_3              14               115
D54V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              19               214
  CLUS_2              19               180
  CLUS_3              10               115
D54V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               146
  CLUS_2              18               146
  CLUS_3              17               215
D54V4, multiclass
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              10               156
  CLUS_2              22               182
  CLUS_3              16               183
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               158
  CLUS_2              23               153
  CLUS_3              12               209
D54V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               9               111
  CLUS_2              17               179
  CLUS_3              11                71
D54V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2               6                78
  CLUS_3               9                99
  CLUS_4              17               132
D54V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               8                92
  CLUS_2               8                59
  CLUS_3              11                80
D54V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              14                96
  CLUS_2              12                98
  CLUS_3               1                37
D54V11, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              16               105
  CLUS_2              10               172
  CLUS_3              15               129
D54V12, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              25               256
  CLUS_3              16               145

Clustering(55) Variable = 8p loss mutation analysis
D55V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              91               124
  CLUS_2              83               130
  CLUS_3              54                75
D55V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              98               135
  CLUS_2              84               115
  CLUS_3              46                79
D55V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              62                97
  CLUS_2              74                90
  CLUS_3              92               140
D55V4, multiclass
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              51               115
  CLUS_2              86               118
  CLUS_3              98               101
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              79                92
  CLUS_2              61               115
  CLUS_3              95               126
D55V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              51                69
  CLUS_2              87               109
  CLUS_3              27                55
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              23                34
  CLUS_2              35                49
  CLUS_3              52                56
  CLUS_4              55                94
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              48                52
  CLUS_2              25                42
  CLUS_3              43                48
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              48                62
  CLUS_2              50                60
  CLUS_3              18                20
D55V11, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              54                67
  CLUS_2              69               113
  CLUS_3              56                88
D55V12, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                 1
  CLUS_2             109               172
  CLUS_3              66                95

Clustering(56) Variable = 8q loss mutation analysis
D56V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              32               183
  CLUS_2              19               194
  CLUS_3              10               119
D56V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              17               216
  CLUS_2              30               169
  CLUS_3              14               111
D56V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12               147
  CLUS_2              18               146
  CLUS_3              31               201
D56V4, multiclass
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12               154
  CLUS_2              16               188
  CLUS_3              35               164
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              26               145
  CLUS_2              13               163
  CLUS_3              24               197
D56V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              15               105
  CLUS_2              22               174
  CLUS_3               3                79
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                53
  CLUS_2               8                76
  CLUS_3              15                93
  CLUS_4              13               136
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               8                92
  CLUS_2               6                61
  CLUS_3              18                73
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              20                90
  CLUS_2               8               102
  CLUS_3               4                34
D56V11, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              14               107
  CLUS_2              17               165
  CLUS_3              16               128
D56V12, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              27               254
  CLUS_3              19               142

Clustering(57) Variable = 9p loss mutation analysis
D57V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              94               121
  CLUS_2              58               155
  CLUS_3              55                74
D57V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              74               159
  CLUS_2              92               107
  CLUS_3              41                84
D57V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              55               104
  CLUS_2              62               102
  CLUS_3              89               143
D57V4, multiclass
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              62               104
  CLUS_2              63               141
  CLUS_3              87               112
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              72                99
  CLUS_2              78                98
  CLUS_3              62               159
D57V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              42                78
  CLUS_2              68               128
  CLUS_3              33                49
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              21                36
  CLUS_2              30                54
  CLUS_3              37                71
  CLUS_4              55                94
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              35                65
  CLUS_2              21                46
  CLUS_3              36                55
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              38                72
  CLUS_2              35                75
  CLUS_3              19                19
D57V11, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              50                71
  CLUS_2              55               127
  CLUS_3              61                83
D57V12, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                 3
  CLUS_2              97               184
  CLUS_3              67                94

Clustering(58) Variable = 9q loss mutation analysis
D58V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1             111               104
  CLUS_2              76               137
  CLUS_3              47                82
D58V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              79               154
  CLUS_2             105                94
  CLUS_3              50                75
D58V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              57               102
  CLUS_2              71                93
  CLUS_3             106               126
D58V4, multiclass
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              62               104
  CLUS_2              56               148
  CLUS_3             122                77
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              91                80
  CLUS_2              68               108
  CLUS_3              81               140
D58V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              47                73
  CLUS_2              83               113
  CLUS_3              30                52
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              25                32
  CLUS_2              32                52
  CLUS_3              45                63
  CLUS_4              58                91
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              39                61
  CLUS_2              19                48
  CLUS_3              50                41
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              53                57
  CLUS_2              40                70
  CLUS_3              15                23
D58V11, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              49                72
  CLUS_2              69               113
  CLUS_3              71                73
D58V12, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                 2
  CLUS_2             106               175
  CLUS_3              80                81

Clustering(59) Variable = 10p loss mutation analysis
D59V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               25                190
  CLUS_2               28                185
  CLUS_3               11                118
D59V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               24                209
  CLUS_2               23                176
  CLUS_3               17                108
D59V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                140
  CLUS_2               14                150
  CLUS_3               31                201
D59V4, multiclass
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               21                145
  CLUS_2               24                180
  CLUS_3               22                177
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               21                150
  CLUS_2               23                153
  CLUS_3               23                198
D59V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                9                111
  CLUS_2               28                168
  CLUS_3               10                 72
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               11                 46
  CLUS_2               11                 73
  CLUS_3               12                 96
  CLUS_4               13                136
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                9                 91
  CLUS_2                7                 60
  CLUS_3                9                 82
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               13                 97
  CLUS_2                9                101
  CLUS_3                3                 35
D59V11, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                8                113
  CLUS_2               24                158
  CLUS_3               20                124
D59V12, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               32                249
  CLUS_3               19                142

Clustering(60) Variable = 10q loss mutation analysis
D60V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               34                181
  CLUS_2               36                177
  CLUS_3               17                112
D60V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               31                202
  CLUS_2               33                166
  CLUS_3               23                102
D60V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               23                136
  CLUS_2               19                145
  CLUS_3               45                187
D60V4, multiclass
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               24                142
  CLUS_2               26                178
  CLUS_3               40                159
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               31                140
  CLUS_2               25                151
  CLUS_3               34                187
D60V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               15                105
  CLUS_2               38                158
  CLUS_3               12                 70
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               13                 44
  CLUS_2               17                 67
  CLUS_3               16                 92
  CLUS_4               19                130
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               15                 85
  CLUS_2                9                 58
  CLUS_3               16                 75
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               21                 89
  CLUS_2               16                 94
  CLUS_3                3                 35
D60V11, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               14                107
  CLUS_2               33                149
  CLUS_3               24                120
D60V12, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               46                235
  CLUS_3               23                138

Clustering(61) Variable = 11p loss mutation analysis
D61V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               71                144
  CLUS_2               45                168
  CLUS_3               26                103
D61V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               49                184
  CLUS_2               67                132
  CLUS_3               26                 99
D61V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               34                125
  CLUS_2               37                127
  CLUS_3               70                162
D61V4, multiclass
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               33                133
  CLUS_2               53                151
  CLUS_3               60                139
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               59                112
  CLUS_2               38                138
  CLUS_3               49                172
D61V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               33                 87
  CLUS_2               49                147
  CLUS_3               17                 65
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               14                 43
  CLUS_2               14                 70
  CLUS_3               34                 74
  CLUS_4               37                112
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               25                 75
  CLUS_2               12                 55
  CLUS_3               34                 57
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               32                 78
  CLUS_2               31                 79
  CLUS_3                8                 30
D61V11, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               31                 90
  CLUS_2               52                130
  CLUS_3               37                107
D61V12, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               79                202
  CLUS_3               40                121

Clustering(62) Variable = 11q loss mutation analysis
D62V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               50                165
  CLUS_2               36                177
  CLUS_3               20                109
D62V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               41                192
  CLUS_2               44                155
  CLUS_3               21                104
D62V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                136
  CLUS_2               24                140
  CLUS_3               57                175
D62V4, multiclass
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               24                142
  CLUS_2               41                163
  CLUS_3               43                156
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               41                130
  CLUS_2               33                143
  CLUS_3               34                187
D62V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                 97
  CLUS_2               37                159
  CLUS_3               13                 69
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               12                 45
  CLUS_2                8                 76
  CLUS_3               25                 83
  CLUS_4               28                121
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               16                 84
  CLUS_2               11                 56
  CLUS_3               26                 65
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               25                 85
  CLUS_2               21                 89
  CLUS_3                7                 31
D62V11, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               24                 97
  CLUS_2               43                139
  CLUS_3               24                120
D62V12, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               65                216
  CLUS_3               25                136

Clustering(63) Variable = 12p loss mutation analysis
D63V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               16                199
  CLUS_2               18                195
  CLUS_3               16                113
D63V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               25                208
  CLUS_2               11                188
  CLUS_3               14                111
D63V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               14                145
  CLUS_2               15                149
  CLUS_3               21                211
D63V4, multiclass
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               15                151
  CLUS_2               27                177
  CLUS_3                9                190
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                160
  CLUS_2               15                161
  CLUS_3               25                196
D63V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                110
  CLUS_2               17                179
  CLUS_3                6                 76
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                 47
  CLUS_2                6                 78
  CLUS_3                9                 99
  CLUS_4                8                141
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                 90
  CLUS_2                6                 61
  CLUS_3                4                 87
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                104
  CLUS_2               10                100
  CLUS_3                4                 34
D63V11, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                110
  CLUS_2               20                162
  CLUS_3               11                133
D63V12, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               29                252
  CLUS_3               12                149

Clustering(64) Variable = 12q loss mutation analysis
D64V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               23                192
  CLUS_2               35                178
  CLUS_3               15                114
D64V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               34                199
  CLUS_2               14                185
  CLUS_3               25                100
D64V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               22                137
  CLUS_2               26                138
  CLUS_3               26                206
D64V4, multiclass
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               20                146
  CLUS_2               40                164
  CLUS_3               16                183
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               15                156
  CLUS_2               28                148
  CLUS_3               33                188
D64V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               18                102
  CLUS_2               25                171
  CLUS_3               10                 72
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               12                 45
  CLUS_2               12                 72
  CLUS_3               13                 95
  CLUS_4               16                133
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               14                 86
  CLUS_2                7                 60
  CLUS_3                5                 86
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                5                105
  CLUS_2               14                 96
  CLUS_3                7                 31
D64V11, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               15                106
  CLUS_2               28                154
  CLUS_3               15                129
D64V12, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               40                241
  CLUS_3               17                144

Clustering(65) Variable = 13q loss mutation analysis
D65V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               96                119
  CLUS_2              108                105
  CLUS_3               51                 78
D65V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1              104                129
  CLUS_2               90                109
  CLUS_3               61                 64
D65V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               71                 88
  CLUS_2               76                 88
  CLUS_3              109                123
D65V4, multiclass
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               57                109
  CLUS_2              109                 95
  CLUS_3               96                103
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               78                 93
  CLUS_2               56                120
  CLUS_3              128                 93
D65V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               50                 70
  CLUS_2              109                 87
  CLUS_3               29                 53
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               31                 26
  CLUS_2               46                 38
  CLUS_3               58                 50
  CLUS_4               53                 96
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               43                 57
  CLUS_2               37                 30
  CLUS_3               42                 49
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               51                 59
  CLUS_2               53                 57
  CLUS_3               18                 20
D65V11, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               49                 72
  CLUS_2               87                 95
  CLUS_3               68                 76
D65V12, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2              126                155
  CLUS_3               76                 85

Clustering(66) Variable = 14q loss mutation analysis
D66V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               72                143
  CLUS_2               59                154
  CLUS_3               29                100
D66V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               60                173
  CLUS_2               67                132
  CLUS_3               33                 92
D66V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               48                111
  CLUS_2               45                119
  CLUS_3               67                165
D66V4, multiclass
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               42                124
  CLUS_2               43                161
  CLUS_3               79                120
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               62                109
  CLUS_2               41                135
  CLUS_3               61                160
D66V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               32                 88
  CLUS_2               55                141
  CLUS_3               22                 60
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               19                 38
  CLUS_2               25                 59
  CLUS_3               30                 78
  CLUS_4               35                114
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               27                 73
  CLUS_2               13                 54
  CLUS_3               34                 57
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               33                 77
  CLUS_2               33                 77
  CLUS_3                8                 30
D66V11, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               30                 91
  CLUS_2               53                129
  CLUS_3               46                 98
D66V12, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               75                206
  CLUS_3               52                109

Clustering(67) Variable = 15q loss mutation analysis
D67V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1              101                114
  CLUS_2               67                146
  CLUS_3               46                 83
D67V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               82                151
  CLUS_2               93                106
  CLUS_3               39                 86
D67V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               47                112
  CLUS_2               57                107
  CLUS_3              110                122
D67V4, multiclass
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               48                118
  CLUS_2               57                147
  CLUS_3              115                 84
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               87                 84
  CLUS_2               52                124
  CLUS_3               81                140
D67V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               45                 75
  CLUS_2               79                117
  CLUS_3               32                 50
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               24                 33
  CLUS_2               33                 51
  CLUS_3               44                 64
  CLUS_4               55                 94
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               37                 63
  CLUS_2               19                 48
  CLUS_3               45                 46
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               48                 62
  CLUS_2               40                 70
  CLUS_3               13                 25
D67V11, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               44                 77
  CLUS_2               92                 90
  CLUS_3               50                 94
D67V12, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2              123                158
  CLUS_3               62                 99

Clustering(68) Variable = 16p loss mutation analysis
D68V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1              101                114
  CLUS_2               99                114
  CLUS_3               63                 66
D68V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1              110                123
  CLUS_2               93                106
  CLUS_3               60                 65
D68V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               79                 80
  CLUS_2               68                 96
  CLUS_3              116                116
D68V4, multiclass
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               73                 93
  CLUS_2               88                116
  CLUS_3              110                 89
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               93                 78
  CLUS_2               81                 95
  CLUS_3               97                124
D68V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               57                 63
  CLUS_2               90                106
  CLUS_3               38                 44
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               27                 30
  CLUS_2               38                 46
  CLUS_3               48                 60
  CLUS_4               72                 77
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               53                 47
  CLUS_2               28                 39
  CLUS_3               46                 45
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               52                 58
  CLUS_2               58                 52
  CLUS_3               17                 21
D68V11, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               54                 67
  CLUS_2               97                 85
  CLUS_3               67                 77
D68V12, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2              142                139
  CLUS_3               73                 88

Clustering(69) Variable = 16q loss mutation analysis
D69V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              136                 79
  CLUS_2              132                 81
  CLUS_3               83                 46
D69V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              145                 88
  CLUS_2              128                 71
  CLUS_3               78                 47
D69V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              100                 59
  CLUS_2               92                 72
  CLUS_3              159                 73
D69V4, multiclass
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               95                 71
  CLUS_2              125                 79
  CLUS_3              140                 59
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              119                 52
  CLUS_2              111                 65
  CLUS_3              130                 91
D69V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               72                 48
  CLUS_2              126                 70
  CLUS_3               51                 31
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               36                 21
  CLUS_2               53                 31
  CLUS_3               69                 39
  CLUS_4               91                 58
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               65                 35
  CLUS_2               38                 29
  CLUS_3               59                 32
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               70                 40
  CLUS_2               70                 40
  CLUS_3               22                 16
D69V11, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               76                 45
  CLUS_2              125                 57
  CLUS_3               87                 57
D69V12, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2              187                 94
  CLUS_3               96                 65

Clustering(70) Variable = 17p loss mutation analysis
D70V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              158                 57
  CLUS_2              169                 44
  CLUS_3               92                 37
D70V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              174                 59
  CLUS_2              141                 58
  CLUS_3              104                 21
D70V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              119                 40
  CLUS_2              123                 41
  CLUS_3              178                 54
D70V4, multiclass
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              122                 44
  CLUS_2              162                 42
  CLUS_3              145                 54
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              117                 54
  CLUS_2              138                 38
  CLUS_3              173                 48
D70V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               84                 36
  CLUS_2              146                 50
  CLUS_3               63                 19
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               48                  9
  CLUS_2               62                 22
  CLUS_3               80                 28
  CLUS_4              103                 46
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               81                 19
  CLUS_2               52                 15
  CLUS_3               65                 26
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               78                 32
  CLUS_2               91                 19
  CLUS_3               29                  9
D70V11, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               91                 30
  CLUS_2              145                 37
  CLUS_3              105                 39
D70V12, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2              218                 63
  CLUS_3              120                 41

Clustering(71) Variable = 17q loss mutation analysis
D71V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1              127                 88
  CLUS_2              136                 77
  CLUS_3               61                 68
D71V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1              123                110
  CLUS_2              113                 86
  CLUS_3               88                 37
D71V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               85                 74
  CLUS_2               88                 76
  CLUS_3              151                 81
D71V4, multiclass
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               97                 69
  CLUS_2              124                 80
  CLUS_3              111                 88
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               90                 81
  CLUS_2              105                 71
  CLUS_3              136                 85
D71V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               61                 59
  CLUS_2              120                 76
  CLUS_3               49                 33
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               36                 21
  CLUS_2               54                 30
  CLUS_3               65                 43
  CLUS_4               75                 74
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               57                 43
  CLUS_2               48                 19
  CLUS_3               53                 38
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               66                 44
  CLUS_2               63                 47
  CLUS_3               29                  9
D71V11, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               57                 64
  CLUS_2              117                 65
  CLUS_3               90                 54
D71V12, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2              158                123
  CLUS_3              103                 58

Clustering(72) Variable = 18p loss mutation analysis
D72V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               74                141
  CLUS_2               68                145
  CLUS_3               40                 89
D72V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               77                156
  CLUS_2               63                136
  CLUS_3               42                 83
D72V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               59                100
  CLUS_2               48                116
  CLUS_3               76                156
D72V4, multiclass
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               63                103
  CLUS_2               60                144
  CLUS_3               64                135
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               48                123
  CLUS_2               73                103
  CLUS_3               65                156
D72V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               42                 78
  CLUS_2               65                131
  CLUS_3               28                 54
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               17                 40
  CLUS_2               22                 62
  CLUS_3               42                 66
  CLUS_4               54                 95
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               29                 71
  CLUS_2               15                 52
  CLUS_3               39                 52
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               42                 68
  CLUS_2               30                 80
  CLUS_3               11                 27
D72V11, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               39                 82
  CLUS_2               59                123
  CLUS_3               50                 94
D72V12, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               92                189
  CLUS_3               54                107

Clustering(73) Variable = 18q loss mutation analysis
D73V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               97                118
  CLUS_2               78                135
  CLUS_3               53                 76
D73V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               91                142
  CLUS_2               84                115
  CLUS_3               53                 72
D73V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               70                 89
  CLUS_2               65                 99
  CLUS_3               94                138
D73V4, multiclass
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               67                 99
  CLUS_2               88                116
  CLUS_3               81                118
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               68                103
  CLUS_2               80                 96
  CLUS_3               88                133
D73V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               50                 70
  CLUS_2               79                117
  CLUS_3               34                 48
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               17                 40
  CLUS_2               31                 53
  CLUS_3               51                 57
  CLUS_4               64                 85
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               34                 66
  CLUS_2               21                 46
  CLUS_3               50                 41
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               53                 57
  CLUS_2               38                 72
  CLUS_3               14                 24
D73V11, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               51                 70
  CLUS_2               72                110
  CLUS_3               64                 80
D73V12, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2              113                168
  CLUS_3               71                 90

Clustering(74) Variable = 19p loss mutation analysis
D74V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               60                155
  CLUS_2               53                160
  CLUS_3               29                100
D74V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               58                175
  CLUS_2               54                145
  CLUS_3               30                 95
D74V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               34                125
  CLUS_2               39                125
  CLUS_3               69                163
D74V4, multiclass
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               38                128
  CLUS_2               47                157
  CLUS_3               60                139
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               53                118
  CLUS_2               37                139
  CLUS_3               54                167
D74V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               20                100
  CLUS_2               48                148
  CLUS_3               27                 55
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               16                 41
  CLUS_2               14                 70
  CLUS_3               33                 75
  CLUS_4               32                117
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               29                 71
  CLUS_2               14                 53
  CLUS_3               26                 65
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               30                 80
  CLUS_2               31                 79
  CLUS_3                8                 30
D74V11, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               30                 91
  CLUS_2               48                134
  CLUS_3               39                105
D74V12, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               73                208
  CLUS_3               42                119

Clustering(75) Variable = 19q loss mutation analysis
D75V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               63                152
  CLUS_2               54                159
  CLUS_3               25                104
D75V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               53                180
  CLUS_2               55                144
  CLUS_3               34                 91
D75V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               38                121
  CLUS_2               37                127
  CLUS_3               67                165
D75V4, multiclass
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               46                120
  CLUS_2               44                160
  CLUS_3               55                144
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               47                124
  CLUS_2               42                134
  CLUS_3               55                166
D75V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               23                 97
  CLUS_2               44                152
  CLUS_3               27                 55
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               17                 40
  CLUS_2               16                 68
  CLUS_3               29                 79
  CLUS_4               32                117
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               25                 75
  CLUS_2               17                 50
  CLUS_3               23                 68
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               28                 82
  CLUS_2               29                 81
  CLUS_3                8                 30
D75V11, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               29                 92
  CLUS_2               40                142
  CLUS_3               44                100
D75V12, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               65                216
  CLUS_3               47                114

Clustering(76) Variable = 20p loss mutation analysis
D76V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                205
  CLUS_2               15                198
  CLUS_3               11                118
D76V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               16                217
  CLUS_2               10                189
  CLUS_3               10                115
D76V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                148
  CLUS_2                8                156
  CLUS_3               17                215
D76V4, multiclass
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                153
  CLUS_2               17                187
  CLUS_3                8                191
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                165
  CLUS_2               16                160
  CLUS_3               16                205
D76V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                114
  CLUS_2               15                181
  CLUS_3                4                 78
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                7                 77
  CLUS_3                9                 99
  CLUS_4                7                142
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 88
  CLUS_2                1                 66
  CLUS_3                4                 87
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                106
  CLUS_2               12                 98
  CLUS_3                1                 37
D76V11, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                119
  CLUS_2               18                164
  CLUS_3               10                134
D76V12, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               20                261
  CLUS_3               10                151

Clustering(77) Variable = 20q loss mutation analysis
D77V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                208
  CLUS_2               10                203
  CLUS_3                4                125
D77V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                227
  CLUS_2                7                192
  CLUS_3                8                117
D77V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                152
  CLUS_2                3                161
  CLUS_3               11                221
D77V4, multiclass
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                9                157
  CLUS_2                7                197
  CLUS_3                6                193
D77V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                166
  CLUS_2                8                168
  CLUS_3                9                212
D77V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                116
  CLUS_2               10                186
  CLUS_3                1                 81
D77V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                6                 78
  CLUS_3                4                104
  CLUS_4                3                146
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 96
  CLUS_2                0                 67
  CLUS_3                2                 89
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                108
  CLUS_2                4                106
  CLUS_3                0                 38
D77V11, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                119
  CLUS_2               10                172
  CLUS_3                6                138
D77V12, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               12                269
  CLUS_3                6                155

Clustering(78) Variable = 21q loss mutation analysis
D78V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               62                153
  CLUS_2               57                156
  CLUS_3               28                101
D78V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               54                179
  CLUS_2               54                145
  CLUS_3               39                 86
D78V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               35                124
  CLUS_2               47                117
  CLUS_3               65                167
D78V4, multiclass
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               41                125
  CLUS_2               55                149
  CLUS_3               55                144
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               57                114
  CLUS_2               40                136
  CLUS_3               53                168
D78V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               24                 96
  CLUS_2               51                145
  CLUS_3               24                 58
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               19                 38
  CLUS_2               19                 65
  CLUS_3               28                 80
  CLUS_4               33                116
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               31                 69
  CLUS_2               15                 52
  CLUS_3               26                 65
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               27                 83
  CLUS_2               34                 76
  CLUS_3               11                 27
D78V11, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               28                 93
  CLUS_2               54                128
  CLUS_3               38                106
D78V12, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               75                206
  CLUS_3               44                117

Clustering(79) Variable = 22q loss mutation analysis
D79V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              168                 47
  CLUS_2              129                 84
  CLUS_3               80                 49
D79V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              134                 99
  CLUS_2              156                 43
  CLUS_3               87                 38
D79V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               99                 60
  CLUS_2              108                 56
  CLUS_3              170                 62
D79V4, multiclass
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              103                 63
  CLUS_2              127                 77
  CLUS_3              157                 42
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              129                 42
  CLUS_2              122                 54
  CLUS_3              135                 86
D79V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               81                 39
  CLUS_2              143                 53
  CLUS_3               47                 35
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               35                 22
  CLUS_2               66                 18
  CLUS_3               70                 38
  CLUS_4              100                 49
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               66                 34
  CLUS_2               44                 23
  CLUS_3               72                 19
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               84                 26
  CLUS_2               72                 38
  CLUS_3               26                 12
D79V11, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               70                 51
  CLUS_2              137                 45
  CLUS_3              107                 37
D79V12, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2              192                 89
  CLUS_3              119                 42

Clustering(80) Variable = Xq loss mutation analysis
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              47               168
  CLUS_2              36               177
  CLUS_3              16               113
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              33               200
  CLUS_2              41               158
  CLUS_3              25               100
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              22               137
  CLUS_2              24               140
  CLUS_3              53               179
D80V4, multiclass
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              22               144
  CLUS_2              45               159
  CLUS_3              34               165
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              36               135
  CLUS_2              26               150
  CLUS_3              39               182
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              20               100
  CLUS_2              32               164
  CLUS_3              13                69
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                48
  CLUS_2              18                66
  CLUS_3              18                90
  CLUS_4              20               129
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              17                83
  CLUS_2              15                52
  CLUS_3              24                67
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              26                84
  CLUS_2              22                88
  CLUS_3               8                30
D80V11, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              23                98
  CLUS_2              33               149
  CLUS_3              26               118
D80V12, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                 3
  CLUS_2              50               231
  CLUS_3              30               131
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"              "MIR_CNMF" 
                     V4                      V5                      V6 
    "MIR_CHIERARCHICAL"               "CN_CNMF"      "METHLYATION_CNMF" 
                     V7                      V8                      V9 
            "RPPA_CNMF"    "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" 
                    V10                     V11                     V12 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
