GDAC_MergedClusteringPipeline Execution Log 2:27 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2861229/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2902974/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile PRAD-TP
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2901095/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/PRAD-TP/2859906/3.GDAC_selectBestcluster.Finished/PRAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2860172/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/PRAD-TP/2860173/3.GDAC_selectBestcluster.Finished/PRAD-TP.bestclus.txt
Execution Times:
Submitted: 02:27:44 09-04-13
Completed:
Elapsed: 07 hrs 20 mins 08 secs

step 1. GDAC_mergedClustering [id: 374799] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2861229/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2902974/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
mergedfile PRAD-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2901095/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/PRAD-TP/2859906/3.GDAC_selectBestcluster.Finished/PRAD-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/PRAD-TP/2860172/3.GDAC_CNMFselectcluster.Finished/PRAD-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/PRAD-TP/2860173/3.GDAC_selectBestcluster.Finished/PRAD-TP.bestclus.txt
Output Files:
 PRAD-TP.mergedcluster.txt
 PRAD-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:27:44 09-04-13
Completed: 02:29:28 09-04-13
Elapsed: 00 hrs 01 mins 43 secs

step 2. GDAC_mergedReport [id: 374800]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster PRAD-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:27:44 09-04-13
Completed: 09:47:52 09-04-13
Elapsed: 07 hrs 20 mins 07 secs