GDAC_MergedClusteringPipeline Execution Log 3:12 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/SARC-TP/2861017/3.GDAC_CNMFselectcluster.Finished/SARC-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/SARC-TP/2902556/3.GDAC_CNMFselectcluster.Finished/SARC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile SARC-TP
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/SARC-TP/2860194/3.GDAC_CNMFselectcluster.Finished/SARC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/SARC-TP/2860193/3.GDAC_selectBestcluster.Finished/SARC-TP.bestclus.txt
Execution Times:
Submitted: 03:12:24 09-04-13
Completed:
Elapsed: 06 hrs 35 mins 54 secs

step 1. GDAC_mergedClustering [id: 374827] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/SARC-TP/2861017/3.GDAC_CNMFselectcluster.Finished/SARC-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/SARC-TP/2902556/3.GDAC_CNMFselectcluster.Finished/SARC-TP.bestclus.txt
mergedfile SARC-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf
mRNAseqhc
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/SARC-TP/2860194/3.GDAC_CNMFselectcluster.Finished/SARC-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/SARC-TP/2860193/3.GDAC_selectBestcluster.Finished/SARC-TP.bestclus.txt
Output Files:
 SARC-TP.transferedmergedcluster.txt
 SARC-TP.mergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 03:12:25 09-04-13
Completed: 03:12:46 09-04-13
Elapsed: 00 hrs 00 mins 21 secs

step 2. GDAC_mergedReport [id: 374828]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster SARC-TP.transferedmergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 03:12:25 09-04-13
Completed: 09:48:17 09-04-13
Elapsed: 06 hrs 35 mins 52 secs