Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-DX-A1KU-01A-32D-A24M-01	TCGA-DX-A1KX-01A-22D-A24M-01	TCGA-DX-A1KY-01A-11D-A24M-01	TCGA-DX-A1KZ-01A-11D-A24M-01	TCGA-DX-A1L0-01A-11D-A24M-01	TCGA-DX-A1L1-01A-11D-A24M-01	TCGA-DX-A1L2-01A-22D-A24M-01	TCGA-DX-A1L3-01A-11D-A24M-01	TCGA-DX-A2IZ-01A-11D-A21P-01	TCGA-DX-A2J0-01A-11D-A21P-01	TCGA-DX-A2J1-01A-11D-A21P-01	TCGA-DX-A2J4-01A-32D-A21P-01	TCGA-DX-A3LS-01A-11D-A21P-01	TCGA-DX-A3LT-01A-12D-A21P-01	TCGA-DX-A3LU-01A-11D-A21P-01	TCGA-DX-A3LW-01A-21D-A21P-01	TCGA-DX-A3M1-01A-11D-A227-01	TCGA-DX-A3M2-01A-21D-A227-01	TCGA-DX-A3U5-01A-11D-A227-01	TCGA-FX-A2QS-01A-11D-A21P-01	TCGA-FX-A3NJ-01A-11D-A21P-01	TCGA-FX-A3NK-01A-11D-A21P-01	TCGA-FX-A3RE-01A-11D-A227-01	TCGA-FX-A3TO-01A-11D-A227-01	TCGA-FX-A48G-01A-11D-A24M-01	TCGA-HB-A2OT-01A-11D-A21P-01	TCGA-HB-A3L4-01A-11D-A21P-01	TCGA-HB-A3YV-01A-11D-A24M-01	TCGA-HB-A43Z-01A-11D-A24M-01	TCGA-IE-A3OV-01A-11D-A227-01	TCGA-IE-A4EH-01A-11D-A24M-01	TCGA-IE-A4EI-01A-11D-A24M-01	TCGA-IE-A4EJ-01A-11D-A24M-01	TCGA-IE-A4EK-01A-11D-A24M-01	TCGA-IF-A3RQ-01A-11D-A227-01	TCGA-IF-A4AJ-01A-11D-A24M-01	TCGA-IF-A4AK-01A-21D-A24M-01	TCGA-IS-A3K6-01A-11D-A21P-01	TCGA-IS-A3K7-01A-11D-A21P-01	TCGA-IS-A3K8-01A-11D-A21P-01	TCGA-IS-A3KA-01A-11D-A21P-01	TCGA-IW-A3M4-01A-11D-A21P-01	TCGA-IW-A3M5-01A-22D-A21P-01	TCGA-IW-A3M6-01A-11D-A21P-01	TCGA-K1-A3PN-01A-11D-A227-01	TCGA-K1-A3PO-01A-11D-A21P-01	TCGA-K1-A42W-01A-11D-A24M-01	TCGA-K1-A42X-01A-11D-A24M-01	TCGA-KF-A41W-01A-11D-A24M-01	TCGA-MO-A47P-01A-11D-A24M-01	TCGA-MO-A47R-01A-11D-A24M-01	
Amplification Peak  1	1p32.1  	chr1:58400165-61214126(probes 29893:31804)          	chr1:58748371-59471630(probes 30171:30717)          	chr1:58748371-59472396(probes 30171:30720)          	0.13456	    0.13456		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	2	0	0	0	2	1	0	0	0	1	2	0	0	0	0	1	0	0	0	1	0	1	0	2	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	
Amplification Peak  2	1q24.3  	chr1:171483980-172409462(probes 81312:81933)      	chr1:172102228-172205261(probes 81720:81795)      	chr1:166745272-173724941(probes 77971:82749)      	5.3341e-06	 5.3341e-06		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	2	0	2	0	2	2	0	2	0	0	0	1	0	0	0	1	0	2	0	0	0	1	1	1	1	0	1	1	1	1	0	0	2	1	0	0	0	0	0	0	0	2	0	0	1	1	0	0	0	
Amplification Peak  3	4p15.2  	chr4:1-26889053(probes 366973:383084)                	chr4:25998768-26018041(probes 382569:382582)        	chr4:25998768-26021478(probes 382569:382585)        	0.11973	    0.11973		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	2	0	1	1	0	0	0	0	0	0	0	0	1	2	0	1	0	2	0	0	0	0	0	1	2	2	0	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	
Amplification Peak  4	5p14.2  	chr5:23432984-23709942(probes 483406:483572)        	chr5:23446584-23591454(probes 483418:483499)        	chr5:23435616-23710643(probes 483407:483574)        	0.011209	   0.011209		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	0	1	0	2	1	2	2	0	0	0	0	2	2	0	0	2	0	0	0	0	0	2	0	2	0	1	1	0	0	2	2	0	0	1	0	1	0	0	0	0	0	0	1	0	2	0	0	0	1	
Amplification Peak  5	6p21.1  	chr6:41698135-42692619(probes 595099:595634)        	chr6:42515373-42555783(probes 595544:595556)        	chr6:41700391-42698604(probes 595100:595636)        	0.009973	   0.009973		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	1	0	0	0	0	0	0	2	2	0	0	1	0	2	0	0	0	0	0	1	0	2	0	0	0	0	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	0	0	
Amplification Peak  6	6q25.1  	chr6:149996721-150644383(probes 654690:655081)    	chr6:150499316-150527402(probes 654967:654995)    	chr6:149915772-150785312(probes 654660:655211)    	0.017875	   0.017875		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	2	0	0	0	0	0	0	1	0	0	1	2	0	0	0	2	0	0	2	0	0	0	1	0	2	2	0	0	0	1	0	2	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	
Amplification Peak  7	7p15.3  	chr7:18741322-36312081(probes 675843:687143)        	chr7:23210130-23215687(probes 678554:678555)        	chr7:23210130-23220802(probes 678554:678558)        	0.22072	    0.22072		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	2	1	0	0	1	0	0	0	0	0	0	1	0	1	1	1	2	2	0	0	0	2	0	1	0	2	0	0	0	2	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	1	
Amplification Peak  8	11q22.2 	chr11:101789694-102797954(probes 1034762:1035251)	chr11:102263274-102551708(probes 1034861:1035065)	chr11:101824125-102572827(probes 1034779:1035087)	0.060124	   0.060124		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	0	2	1	0	0	0	2	0	0	1	0	0	1	1	0	0	0	2	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	
Amplification Peak  9	12p13.32	chr12:4747451-5351735(probes 1058172:1058710)        	chr12:5175404-5235861(probes 1058543:1058590)        	chr12:5175404-5238214(probes 1058543:1058593)        	0.11204	    0.11204		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	2	0	0	2	0	2	1	0	0	2	0	0	0	0	0	0	0	1	0	0	2	0	0	0	1	0	0	0	1	0	0	0	1	
Amplification Peak 10	12q15   	chr12:69199208-69244387(probes 1092638:1092702)    	chr12:69199363-69243712(probes 1092639:1092701)    	chr12:67764175-76147232(probes 1091589:1096740)    	2.0371e-31	 2.0371e-31		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	2	2	2	2	1	2	2	2	2	2	2	2	2	2	2	1	2	2	0	2	0	1	0	0	0	2	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	
Amplification Peak 11	17p12   	chr17:10231418-19152172(probes 1326305:1330360)    	chr17:12623417-12801218(probes 1327936:1328044)    	chr17:11702894-15567668(probes 1327335:1328986)    	0.027398	   0.027398		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	2	1	0	1	1	0	1	1	0	1	0	0	1	2	0	0	0	0	0	0	0	2	0	0	0	1	0	1	
Amplification Peak 12	19p13.2 	chr19:6882410-7309686(probes 1403112:1403231)        	chr19:7120464-7271115(probes 1403121:1403217)        	chr19:6882431-7313871(probes 1403113:1403233)        	0.034447	   0.034447		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	2	2	0	1	1	2	0	1	0	0	0	0	0	1	0	1	0	0	0	2	1	1	1	0	0	1	0	2	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	
Amplification Peak 13	Xq21.1  	chrX:76793273-89210865(probes 1529073:1534794)      	chrX:83591867-83787117(probes 1532078:1532181)      	chrX:83591867-83816609(probes 1532078:1532205)      	0.097542	   0.097542		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  1	1p36.32 	chr1:1-29066142(probes 1:13468)                      	chr1:3647041-3695999(probes 204:230)                  	chr1:1-6355357(probes 1:2008)                       	0.045896	    0.11449		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	0	1	0	1	0	0	1	1	0	1	0	1	1	1	1	0	1	0	0	1	1	0	0	1	
Deletion Peak  2	1p32.3  	chr1:50879767-51569162(probes 25179:25397)          	chr1:51422240-51441997(probes 25348:25352)          	chr1:51233373-51448418(probes 25330:25356)        	0.036828	   0.062239		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	1	1	0	0	1	
Deletion Peak  3	1q44    	chr1:204795036-249250621(probes 101540:129190)    	chr1:247261526-249250621(probes 128878:129190)    	chr1:239021131-249250621(probes 124077:129190)  	0.019702	   0.019702		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	1	1	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	1	1	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	
Deletion Peak  4	2q37.3  	chr2:240317967-243199373(probes 259330:260549)    	chr2:242408088-242453980(probes 260504:260532)    	chr2:228263039-243199373(probes 252294:260549)  	9.7892e-06	 9.7892e-06		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	1	1	1	1	1	1	0	1	1	0	1	0	1	0	0	1	1	0	1	0	0	1	0	0	1	0	1	0	0	
Deletion Peak  5	3p21.31 	chr3:23972868-93784545(probes 273092:311499)        	chr3:49970625-50118486(probes 288219:288281)        	chr3:50044013-50053508(probes 288251:288252)      	0.18476	    0.18696		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	
Deletion Peak  6	3q25.1  	chr3:136467536-163894013(probes 335670:349977)    	chr3:152054210-152060984(probes 343837:343838)    	chr3:151879378-154165137(probes 343734:345100)  	0.039101	   0.039101		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	1	1	0	1	0	1	1	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	1	0	0	1	
Deletion Peak  7	4q35.1  	chr4:156726176-191154276(probes 452881:469765)    	chr4:186346211-186421723(probes 468287:468306)    	chr4:179868283-191154276(probes 465484:469765)  	0.014418	   0.013878		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	0	1	0	0	1	0	0	0	1	1	0	1	1	1	0	1	0	0	0	1	0	1	1	0	1	0	1	0	1	1	0	1	1	0	0	0	1	0	1	1	0	0	1	0	1	0	1	
Deletion Peak  8	5q23.3  	chr5:102407733-180915260(probes 523480:570315)    	chr5:130487958-130545024(probes 539835:539866)    	chr5:130077039-130970551(probes 539642:540065)  	0.22843	    0.22843		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	1	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	
Deletion Peak  9	6q15    	chr6:47864832-171115067(probes 598683:666853)      	chr6:88215554-88377241(probes 618483:618565)        	chr6:88230128-88316152(probes 618487:618528)      	0.19186	    0.18853		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	0	0	1	1	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	
Deletion Peak 10	7q36.3  	chr7:113516404-159138663(probes 724272:748214)    	chr7:156227166-156496886(probes 747201:747339)    	chr7:155336639-156641737(probes 746571:747412)  	0.18937	    0.18853		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	1	1	1	0	0	0	0	0	1	1	0	0	1	0	0	0	0	
Deletion Peak 11	8p23.2  	chr8:1-9414641(probes 748215:752091)                   	chr8:2784419-4854274(probes 749002:750427)            	chr8:3520602-3544535(probes 749715:749716)          	0.053443	   0.050245		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	1	0	0	0	0	0	1	1	0	1	1	0	1	1	0	1	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 12	9p21.3  	chr9:21865498-22448737(probes 843237:843600)        	chr9:21999616-22011391(probes 843304:843328)        	chr9:21320827-24095606(probes 842909:844692)      	2.7511e-07	 2.7511e-07		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	1	0	0	0	0	0	1	0	0	1	1	1	1	1	0	0	1	0	1	1	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	1	1	0	0	1	0	1	0	1	
Deletion Peak 13	9q34.3  	chr9:131934548-141213431(probes 893415:897849)    	chr9:140310047-141213431(probes 897633:897849)    	chr9:134858098-141213431(probes 895151:897849)  	0.023103	   0.023103		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	0	1	0	1	1	0	0	0	0	1	1	0	0	0	1	0	1	0	0	0	1	1	0	0	1	
Deletion Peak 14	10p15.3 	chr10:1-857150(probes 897850:897995)                   	chr10:1-742144(probes 897850:897937)                   	chr10:1-485674(probes 897850:897897)                 	0.080441	    0.07995		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	1	0	1	0	1	1	1	0	1	1	0	0	1	1	0	1	0	0	0	1	1	1	0	1	0	1	0	1	
Deletion Peak 15	11p15.5 	chr11:1-929549(probes 978754:978857)                   	chr11:1-496996(probes 978754:978766)                   	chr11:1-5002385(probes 978754:980669)               	0.0021152	  0.0021683		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	0	1	0	0	1	0	0	1	1	0	1	1	0	1	0	0	0	1	1	1	1	0	1	1	0	0	1	0	0	0	1	1	0	0	0	0	0	1	1	1	0	1	0	0	0	0	
Deletion Peak 16	11q22.3 	chr11:73083465-135006516(probes 1017065:1056041)  	chr11:101318898-105017922(probes 1034419:1036478)	chr11:98405360-135006516(probes 1032142:1056041)	0.019265	   0.066308		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	0	0	0	1	1	0	0	0	0	0	1	0	1	1	0	0	0	0	0	1	1	1	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	1	0	0	1	1	0	0	1	
Deletion Peak 17	11q24.3 	chr11:102494467-135006516(probes 1035026:1056041)	chr11:128803545-128815336(probes 1052780:1052790)	chr11:98405360-135006516(probes 1032142:1056041)	0.00019777	   0.028808		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	0	1	0	0	1	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	1	0	1	0	0	1	0	1	0	1	0	0	0	1	0	1	1	0	0	1	1	1	0	1	
Deletion Peak 18	12p12.3 	chr12:1-39688977(probes 1056042:1075847)             	chr12:14918902-14982351(probes 1063916:1063933)    	chr12:10717443-19081313(probes 1061300:1066385)  	0.036609	   0.036828		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	0	0	1	0	0	0	1	0	1	0	1	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	
Deletion Peak 19	13q14.2 	chr13:48833767-49798173(probes 1148606:1149301)    	chr13:48875753-49060837(probes 1148629:1148855)    	chr13:39400716-75172483(probes 1142542:1161810)  	3.3332e-06	 3.3332e-06		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	0	0	0	1	0	0	1	1	0	0	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	0	1	0	1	0	1	
Deletion Peak 20	14q24.1 	chr14:1-102523336(probes 1186683:1234858)         	chr14:68208721-68289663(probes 1212995:1213053)    	chr14:68217052-68809563(probes 1213001:1213284)  	0.10858	    0.10871		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	0	1	0	0	0	0	0	0	1	1	0	0	1	1	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	0	0	0	1	1	1	0	1	1	1	0	0	0	1	0	0	0	
Deletion Peak 21	17p13.1 	chr17:7613709-7744654(probes 1324679:1324737)        	chr17:7617433-7743098(probes 1324682:1324736)        	chr17:7506258-7754459(probes 1324646:1324739)      	0.0023697	  0.0023252		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	1	0	1	1	0	0	1	1	1	0	0	0	1	0	1	0	1	0	1	0	0	
Deletion Peak 22	17q25.3 	chr17:80443432-80617015(probes 1358241:1358351)    	chr17:80474034-80571059(probes 1358253:1358329)    	chr17:80531387-81195210(probes 1358284:1358518)  	0.0087613	  0.0089643		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	1	0	0	
Deletion Peak 23	19p13.3 	chr19:1-3187429(probes 1401205:1401874)               	chr19:1-412729(probes 1401205:1401233)                 	chr19:1-1537245(probes 1401205:1401443)             	0.069889	   0.069889		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	1	0	0	0	1	1	0	1	0	1	0	1	1	1	0	1	0	1	0	0	
Deletion Peak 24	19q13.33	chr19:44382732-50837901(probes 1419090:1421782)    	chr19:48206763-48250319(probes 1420828:1420844)    	chr19:47785582-48390143(probes 1420617:1420879)  	0.038533	   0.036828		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	1	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	1	1	0	0	
Deletion Peak 25	21q22.3 	chr21:47427840-47609222(probes 1482952:1483008)    	chr21:47572498-47609222(probes 1482998:1483008)    	chr21:46320794-47632191(probes 1482544:1483023)  	0.0074803	  0.0071201		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	0	1	0	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	1	1	1	0	1	0	1	0	0	
Deletion Peak 26	Xq21.1  	chrX:76225229-77102528(probes 1529015:1529095)      	chrX:76722851-77070309(probes 1529070:1529094)      	chrX:74316005-77001323(probes 1528601:1529090)    	8.5055e-06	 9.7627e-06		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	1	1	0	1	1	0	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	0	1	0	0	1	0	1	1	0	1	1	0	0	0	
Deletion Peak 27	Xq28    	chrX:147107975-149615811(probes 1561034:1562148)  	chrX:148608171-148623035(probes 1561851:1561857)  	chrX:148211017-149119764(probes 1561645:1561859)	0.035046	   0.039101		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	1	1	1	1	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	1	1	1	1	0	1	1	0	1	0	1	1	1	0	0	0	1	1	0	1	1	0	1	1	0	0	0	
Amplification Peak  1 - CN values	1p32.1  	chr1:58400165-61214126(probes 29893:31804)          	chr1:58748371-59471630(probes 30171:30717)          	chr1:58748371-59472396(probes 30171:30720)          	0.13456	    0.13456		Actual Copy Change Given	0.01419	-0.21951	-0.044144	0.061079	1.4122	0	0.0030783	0.00055459	3.6569	0.10156	0.0021812	0.0063871	0.074804	0.32624	3.6569	0.049824	0	0.00089269	0.019991	0.12402	0.020203	0.0049969	-0.77324	0.15801	-0.79586	0.34342	-0.047395	3.2884	0.63267	0.55595	0.017124	0.1368	0	0.0077505	0.78833	-0.019863	-0.090306	0.029494	-0.57694	-0.80495	-0.43572	-0.87276	-0.060341	0.043157	-0.0034627	0.00041593	0.16914	-0.95246	0.68449	0.0015255	-0.56992	
Amplification Peak  2 - CN values	1q24.3  	chr1:171483980-172409462(probes 81312:81933)      	chr1:172102228-172205261(probes 81720:81795)      	chr1:166745272-173724941(probes 77971:82749)      	5.3341e-06	 5.3341e-06		Actual Copy Change Given	3.6569	-0.13471	3.6569	-0.18068	1.4977	0	3.6569	3.6569	0.0063871	3.6569	0.0021812	0.0063871	0.074804	0.32624	0.00041593	0.049824	0	0.40902	-0.55857	3.6569	0.0060309	0.0056919	0.035524	0.15801	0.12727	0.34397	0.86116	-0.11333	0.54959	0.58596	0.78099	0.66263	0	0.0077505	1.354	0.47316	-0.072085	0.010871	0.097542	0.017375	0.018523	0.016146	0.08789	0.90291	0.021463	0.00041593	0.89411	0.89206	-0.1827	0.0015255	0.016845	
Amplification Peak  3 - CN values	4p15.2  	chr4:1-26889053(probes 366973:383084)                	chr4:25998768-26018041(probes 382569:382582)        	chr4:25998768-26021478(probes 382569:382585)        	0.11973	    0.11973		Actual Copy Change Given	-0.017116	0.18698	1.2836	-0.0048461	0.68887	0.65029	0.017709	-0.0023553	-0.89037	-0.03073	-0.0023553	-0.0022168	-0.024928	-0.2429	0.51682	3.6569	0.035806	0.11059	-0.023429	3.4513	-0.016841	-0.018353	0.030136	0.059937	0.030873	0.31411	0.98846	2.1154	-0.53669	-0.021314	0.015727	-0.041509	0.88966	-0.14052	0.010424	0.48906	-0.16199	-0.025866	0.13924	-0.010537	0.45615	-0.013127	-0.57245	0.085799	0.001803	-0.0023553	-0.41144	-0.96975	0.26075	-0.00027724	-0.57229	
Amplification Peak  4 - CN values	5p14.2  	chr5:23432984-23709942(probes 483406:483572)        	chr5:23446584-23591454(probes 483418:483499)        	chr5:23435616-23710643(probes 483407:483574)        	0.011209	   0.011209		Actual Copy Change Given	0.70476	0.91986	-0.0123	0.21054	-0.45982	1.4226	0.73076	1.7402	3.6569	-0.032094	-0.0008316	0.003191	0.0022262	3.493	3.6569	0.0050532	0.024548	1.8366	0.0065262	-0.37586	0.00041593	0.0062481	0.049495	1.9586	0.018803	1.1462	0.040044	0.34655	0.11363	-0.0031859	0	1.3165	1.7365	0.036088	-0.071071	0.44935	0.057	0.80873	-0.61945	-0.0014143	-0.042245	0	-0.071812	0.054337	0.40827	-0.0027707	1.5864	-0.0020784	-0.1499	-0.0011087	0.55407	
Amplification Peak  5 - CN values	6p21.1  	chr6:41698135-42692619(probes 595099:595634)        	chr6:42515373-42555783(probes 595544:595556)        	chr6:41700391-42698604(probes 595100:595636)        	0.009973	   0.009973		Actual Copy Change Given	-0.030677	0.10555	0.00013863	-0.10959	0.037924	0.0055529	0.14102	-0.0029091	0.0033509	0.0092554	-0.0013858	0.0012481	0.010571	3.6565	3.6569	0	-0.83994	0.801	-0.0051227	2.1852	-0.0085766	0.00041593	0.019503	0.074121	0.019503	0.18413	0.032704	3.6569	-0.56415	0.026292	0.015627	-0.033609	0.57648	-0.010851	-0.0087259	0.004719	-0.15457	-0.067297	0.086811	-0.0015528	3.6569	-0.03681	0.5162	-0.64424	-1.0019	-0.37977	0.03513	0.00043701	0.14474	0.0027745	0	
Amplification Peak  6 - CN values	6q25.1  	chr6:149996721-150644383(probes 654690:655081)    	chr6:150499316-150527402(probes 654967:654995)    	chr6:149915772-150785312(probes 654660:655211)    	0.017875	   0.017875		Actual Copy Change Given	-0.038816	1.1318	0.02806	2.3614	0.055373	0.0055529	-0.034631	0.0034687	0.0058309	0.0092554	0.63792	0.0012481	0.0036145	0.37054	1.4553	0.019923	0.054091	-0.10796	3.6569	0.022585	-0.0085766	1.7329	0.0052749	-0.36625	-0.012765	0.18413	0.04883	2.3968	1.4068	-0.55226	0.015627	-0.034562	0.43614	0.0093522	3.5125	-0.45661	-0.10087	-0.062602	0.10672	0.0048293	-0.069198	-0.0013858	1.5097	0.087824	-0.09644	-0.0016629	0.034284	0.0058309	0.044857	0.0027745	0	
Amplification Peak  7 - CN values	7p15.3  	chr7:18741322-36312081(probes 675843:687143)        	chr7:23210130-23215687(probes 678554:678555)        	chr7:23210130-23220802(probes 678554:678558)        	0.22072	    0.22072		Actual Copy Change Given	0.068091	1.6917	0.9	0.10979	0.028903	0.0051359	0.35953	-0.005261	0.014933	0.00022316	0.0007534	-0.0092666	0.02877	0.35291	0	0.3561	0.83844	0.62887	3.6569	3.6569	0.00013863	0.008892	0.041034	0.93142	0.018943	0.36798	0.010564	1.3342	0.073295	-0.57467	0.00052981	1.3248	0.72206	0.0071696	0.011818	0.029184	0.068581	-0.0064772	0.14429	0.0041346	-0.11548	-0.03681	0.28857	-0.64612	-0.056712	0.0024969	-0.4211	0.91279	-0.20921	-0.0020081	0.5493	
Amplification Peak  8 - CN values	11q22.2 	chr11:101789694-102797954(probes 1034762:1035251)	chr11:102263274-102551708(probes 1034861:1035065)	chr11:101824125-102572827(probes 1034779:1035087)	0.060124	   0.060124		Actual Copy Change Given	-0.38537	3.6569	-0.01904	-0.36163	-1.0458	3.6569	0.14503	-0.0072284	-0.015054	-0.79889	3.6569	-0.0016629	-0.00027034	0.42402	-0.0062946	-0.022856	0.6753	0.22722	-0.56776	-0.56286	0.0043021	1.2868	0.0022193	0.52906	0.034677	-0.16159	-0.95166	-0.62347	0.63614	-0.56186	0.70626	-0.025767	-0.03681	0.035665	-0.81827	0.00597	-0.2765	0.0065541	-0.056981	0.0090026	-0.47438	0.013353	-0.54497	-0.27212	-0.037354	0.0010311	-0.43591	-0.96308	0.25386	0.0012481	-0.57565	
Amplification Peak  9 - CN values	12p13.32	chr12:4747451-5351735(probes 1058172:1058710)        	chr12:5175404-5235861(probes 1058543:1058590)        	chr12:5175404-5238214(probes 1058543:1058593)        	0.11204	    0.11204		Actual Copy Change Given	0.48664	0.11316	0.85977	-0.0092666	-0.39441	-0.3189	0.050108	-0.0034627	0.0066653	-0.13734	3.6569	-0.00069303	0.6572	-0.80939	-0.0071958	-0.86354	0.03369	-0.11842	1.5675	-0.039937	-0.14014	1.886	0.023145	2.4648	0.11751	-0.0013074	-0.010103	2.0788	0.029783	0	-0.056195	-0.019632	-0.37392	-0.010155	0.0027745	0.47667	-0.077556	-0.54742	1.3263	0.0064976	-0.0501	0.0095883	0.1605	0	-0.03245	-0.0012473	0.43888	-0.0022168	-0.20005	0	0.52101	
Amplification Peak 10 - CN values	12q15   	chr12:69199208-69244387(probes 1092638:1092702)    	chr12:69199363-69243712(probes 1092639:1092701)    	chr12:67764175-76147232(probes 1091589:1096740)    	2.0371e-31	 2.0371e-31		Actual Copy Change Given	3.6569	-0.0099274	2.9478	3.6569	3.6569	3.6569	0.26101	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	0.17625	3.6569	3.6569	-0.14014	3.6569	0.023145	0.13746	0.0086135	-0.0013074	0.013416	3.6569	0.044751	-0.0033243	-0.83551	-0.0103	0.26357	-0.010155	3.6569	-0.47194	-0.077556	0.0050248	0.016006	0.0064976	-0.049559	0.0026357	0.0039488	0	-0.03245	-0.0012473	-0.019238	-0.0022168	0.67771	0	0.50511	
Amplification Peak 11 - CN values	17p12   	chr17:10231418-19152172(probes 1326305:1330360)    	chr17:12623417-12801218(probes 1327936:1328044)    	chr17:11702894-15567668(probes 1327335:1328986)    	0.027398	   0.027398		Actual Copy Change Given	0	0.0051395	1.1784	-0.12148	0.05281	0.36756	0.55531	-0.0069195	-0.053341	0.080112	0.00041593	0.001392	-0.01711	-0.30815	-0.011335	0.010285	-0.4448	0.17399	3.1766	-0.024251	0.062651	-0.0091286	0.3894	1.8365	0.1649	-0.20329	0.86017	0.34867	-0.024047	0.50602	0.84199	-0.042855	0.4958	-0.90464	-0.013953	0.43614	3.6569	-0.85542	-0.56972	0.071218	-0.098437	0.049682	-0.53526	0.086558	3.6569	0.013492	-0.47202	0.0558	0.68477	0	0.51037	
Amplification Peak 12 - CN values	19p13.2 	chr19:6882410-7309686(probes 1403112:1403231)        	chr19:7120464-7271115(probes 1403121:1403217)        	chr19:6882431-7313871(probes 1403113:1403233)        	0.034447	   0.034447		Actual Copy Change Given	0.1802	1.2855	3.6569	1.8879	-0.016017	0.67938	0.29151	3.6569	-0.056307	0.16664	-0.0013858	-0.0099565	-0.033807	-0.26059	-0.023703	0.29612	-0.076412	0.13117	-0.07067	-0.023703	0.044574	3.6569	0.57255	0.51821	0.21207	-0.054883	-0.051586	0.2334	-0.01378	1.1733	0.06208	0.88936	0.32173	0.84041	-0.019314	-0.024935	0.0040822	0.056684	-0.028765	0.092575	-0.029584	0.035665	-0.61964	-0.14502	0.04259	0.027919	0.78161	0.95857	-0.24448	0.0038854	-0.038578	
Amplification Peak 13 - CN values	Xq21.1  	chrX:76793273-89210865(probes 1529073:1534794)      	chrX:83591867-83787117(probes 1532078:1532181)      	chrX:83591867-83816609(probes 1532078:1532205)      	0.097542	   0.097542		Actual Copy Change Given	0.011121	-1.0379	3.6569	0.12703	2.8199	0.7528	-0.154	0.026514	-0.063435	-0.1884	0.029606	0.019095	-0.056974	-0.055756	0.038065	-0.1755	-0.36556	0.076486	-0.068113	3.6569	-0.082668	-0.032552	-0.46579	1.8011	-0.21466	-0.17036	-0.47056	-0.1997	0.22951	-0.41893	-0.20647	0.15719	0.24607	-0.12043	-0.54754	-0.14926	-0.14162	-0.62081	-0.25479	-0.08243	0.70738	-0.1945	-0.038244	-0.44954	-0.15625	-0.0099289	-0.62005	-0.16281	0.0040243	0.00055459	-0.01849	
Deletion Peak  1 - CN values	1p36.32 	chr1:1-29066142(probes 1:13468)                      	chr1:3647041-3695999(probes 204:230)                  	chr1:1-6355357(probes 1:2008)                       	0.045896	    0.11449		Actual Copy Change Given	-0.013953	-0.22625	-0.044144	0.061079	-0.079343	0.057226	-0.0123	0.00055459	-0.053476	0.10798	0.012516	0.0063871	0.074804	0.32624	-0.015466	-0.66383	0	0.00089269	-0.39686	0.71415	0.020203	0.0049969	-0.80632	0.5813	-0.75636	0.34342	-0.047395	0.36959	-0.62348	0.030591	-0.83341	0.084852	0.61843	-0.92562	-0.94423	-0.036401	-0.71323	0.029494	-0.56336	-0.78363	-0.96198	-0.87276	-0.078749	-0.60709	-0.0034627	0.0048579	-0.94859	-0.94003	0.68449	-0.0023553	-0.56992	
Deletion Peak  2 - CN values	1p32.3  	chr1:50879767-51569162(probes 25179:25397)          	chr1:51422240-51441997(probes 25348:25352)          	chr1:51233373-51448418(probes 25330:25356)        	0.036828	   0.062239		Actual Copy Change Given	0.01419	-0.21951	-0.044144	0.061079	-0.079343	-1.0358	-0.37561	0.00055459	-0.053941	0.10156	0.0021812	0.0063871	0.074804	0.32624	-0.015466	0.049824	0	0.00089269	0.019991	0.12402	0.020203	0.0049969	-0.77324	0.15801	-0.79586	0.34342	-0.047395	1.6506	0.63267	0.58256	0.022024	0.1368	0	0.0077505	0.78833	-0.019863	-0.090306	0.029494	-0.57694	-0.80495	-0.43572	-0.87276	-0.060341	-1.2929	-0.0034627	0.00041593	-0.38109	-1.2929	0.68449	0.0015255	-0.56992	
Deletion Peak  3 - CN values	1q44    	chr1:204795036-249250621(probes 101540:129190)    	chr1:247261526-249250621(probes 128878:129190)    	chr1:239021131-249250621(probes 124077:129190)  	0.019702	   0.019702		Actual Copy Change Given	-0.0012473	-0.62444	-0.78589	-0.27344	-0.49193	-0.22834	-0.39018	-0.0083005	0.0063871	0.7913	0.0021812	0.0095883	0.29088	0.22945	0.00041593	-0.84851	0	-0.25309	-0.57101	-0.16802	0.0060309	-0.00097017	-0.014458	-0.96258	-0.38145	-0.21706	0.86116	-0.11333	0.55713	0.58596	-0.017995	0.64956	-0.73205	0.0077505	-0.82497	0.48821	0.080228	0	-0.05174	0.015838	-0.39553	0.016146	0.52703	0.90291	0.021463	0.00041593	0.48461	0.88752	-0.1827	0.0015255	0.018243	
Deletion Peak  4 - CN values	2q37.3  	chr2:240317967-243199373(probes 259330:260549)    	chr2:242408088-242453980(probes 260504:260532)    	chr2:228263039-243199373(probes 252294:260549)  	9.7892e-06	 9.7892e-06		Actual Copy Change Given	0.11341	0.11917	-0.55857	0.048404	-1.0232	-0.49642	-0.34962	0.00027728	0.00458	0.015672	0.00589	0.0058309	-0.0024869	0.050961	0.0044411	-0.43691	-0.90538	-0.21522	-0.57664	-0.054555	-0.00041585	0.0058309	-0.41564	-0.48355	-0.77354	-0.77841	-0.96853	-0.12857	0.030909	-0.55557	-0.84427	0	-0.16205	-0.0084707	-0.39263	0.027778	0.099349	-0.88246	-0.63708	0.038318	-0.91153	-0.018884	0.055865	-0.64452	0.017404	0.016006	-0.39917	0.053948	-0.70118	0	0.45905	
Deletion Peak  5 - CN values	3p21.31 	chr3:23972868-93784545(probes 273092:311499)        	chr3:49970625-50118486(probes 288219:288281)        	chr3:50044013-50053508(probes 288251:288252)      	0.18476	    0.18696		Actual Copy Change Given	-0.078011	-0.57674	-0.79728	0	-0.49298	0.0049133	-0.38716	-0.0013858	-0.0041546	-0.0082163	-0.0012473	-0.0027707	-0.3792	0.38072	-0.021647	0.016425	-0.42549	-0.23552	-0.0075829	0.0083351	0	-0.63718	-0.81643	0.50654	0.044432	0.18837	0.010285	-0.62594	-0.004394	0.57791	0.020506	0.61948	-0.49454	0	0.008868	0.096816	0.068725	0.0089891	-0.61499	0.0031625	0	0.0040243	-0.54729	-0.63538	0	0.0051359	0.076404	0.014051	0.25918	0.002446	-0.572	
Deletion Peak  6 - CN values	3q25.1  	chr3:136467536-163894013(probes 335670:349977)    	chr3:152054210-152060984(probes 343837:343838)    	chr3:151879378-154165137(probes 343734:345100)  	0.039101	   0.039101		Actual Copy Change Given	-0.017529	0.19254	0.70701	-0.012162	-0.49991	-0.21973	-0.39341	0.0016642	0.022304	-0.0082163	-0.0012473	-0.0027707	0	-0.55967	-0.087782	0.0036857	-0.18131	-0.23552	0.53854	-0.56525	0	-0.64198	-0.80657	0.077862	0	0.18837	0.010842	-0.62594	-1.1615	0.016565	0.0019418	-0.023907	-0.14425	-0.011274	0.008868	0.096816	0.068725	-0.0099288	-0.63034	-0.016778	0	-0.8244	-0.44852	-0.0049844	0	0.00027728	0.076404	-0.99632	0.23024	0.002446	-0.57368	
Deletion Peak  7 - CN values	4q35.1  	chr4:156726176-191154276(probes 452881:469765)    	chr4:186346211-186421723(probes 468287:468306)    	chr4:179868283-191154276(probes 465484:469765)  	0.014418	   0.013878		Actual Copy Change Given	-0.017116	-0.9929	-0.79828	-0.0048461	0.18404	-0.46823	0.085221	-0.0051227	-0.90396	-0.046771	-0.0023553	-0.0022168	-0.38055	-0.2429	0.0022193	-0.48395	-0.40904	-0.2515	0.024969	-0.55136	-0.016841	-0.018353	0.00013863	-0.33433	-0.044144	-0.39867	-0.99708	0.44264	-0.51773	-0.005814	-0.85512	-0.02514	-0.21997	-0.11122	0.010424	-0.45693	-0.16199	-0.032606	0.21376	-0.010537	-0.91507	-0.013127	-0.38432	-0.32089	0.0063405	-0.0023553	-0.40921	-0.011611	-0.67398	-0.00027724	-0.57219	
Deletion Peak  8 - CN values	5q23.3  	chr5:102407733-180915260(probes 523480:570315)    	chr5:130487958-130545024(probes 539835:539866)    	chr5:130077039-130970551(probes 539642:540065)  	0.22843	    0.22843		Actual Copy Change Given	0.015727	0.19071	0.0044411	-0.025756	0.03213	0.68868	0.0020805	0.003735	0.03434	0.014694	0.0013357	0.003191	0.0090382	0.057796	0.0055529	0.0025855	-1.0411	0.081241	-0.57674	-0.54603	0.00041593	0.0062481	0.069956	0.57916	-0.10718	-0.26606	-0.99074	0.34655	0.10311	0.58955	-0.86303	0.65139	0.36838	0.038347	-0.78235	-0.46536	0.057	-0.0017736	0.14483	-0.0014143	0.35512	-0.013402	-0.0090657	0.054337	0.012237	0.0012481	1.1804	-0.0020784	-0.70226	-0.0013858	0.55407	
Deletion Peak  9 - CN values	6q15    	chr6:47864832-171115067(probes 598683:666853)      	chr6:88215554-88377241(probes 618483:618565)        	chr6:88230128-88316152(probes 618487:618528)      	0.19186	    0.18853		Actual Copy Change Given	-0.030677	0.16775	-0.79352	-0.29011	0.57612	0.0055529	-0.017912	-0.0083577	0.0058309	0.0092554	-0.0013858	0.0012481	0.016572	0.33189	0.0077545	0	-0.84643	-0.10796	-0.0051227	0.027216	-0.0085766	1.9548	-0.85043	-0.32124	-0.012765	0.18413	0.04883	0.36845	-0.5368	-0.55226	0.015627	-0.033609	-0.30768	-0.010851	-0.40528	-0.45104	-0.13569	-0.078784	0.086811	-0.0015528	0.11081	-0.03681	0.44587	0.066802	-0.09644	-0.0040606	-0.38882	-0.97181	0.14474	0.0027745	0	
Deletion Peak 10 - CN values	7q36.3  	chr7:113516404-159138663(probes 724272:748214)    	chr7:156227166-156496886(probes 747201:747339)    	chr7:155336639-156641737(probes 746571:747412)  	0.18937	    0.18853		Actual Copy Change Given	0.053379	-0.29083	1.8071	0.10979	-0.48271	0.58309	-0.39352	-0.005261	0.0030008	-0.0027071	0.001803	-0.0092666	0.033415	0.37166	0	0.006109	-0.85496	-0.11045	0.017404	-0.069332	0.00013863	0.008892	1.0411	-0.033541	0.0592	0.23592	-0.97948	-0.65655	-1.2088	0	0.0069435	1.1832	0.26451	-0.0018927	-0.81326	-0.46483	-0.7512	-0.01365	0	0	0.38651	0.029888	-0.52711	-0.60584	-0.056712	0.0024969	-0.4211	0	0	0.00055459	0.5493	
Deletion Peak 11 - CN values	8p23.2  	chr8:1-9414641(probes 748215:752091)                   	chr8:2784419-4854274(probes 749002:750427)            	chr8:3520602-3544535(probes 749715:749716)          	0.053443	   0.050245		Actual Copy Change Given	0.18571	-0.24769	-0.82423	-0.16128	0.018663	-0.020824	-0.83462	-0.0024938	-0.013264	0.023511	-0.0055375	-0.005918	-0.38257	-0.86745	-0.011541	-0.11361	-0.37403	-0.035454	-0.57265	-0.58058	0.35283	-0.63595	-0.48554	-0.44199	0.023286	0.077656	-1.0246	0.37848	-0.59056	0.58274	0.0034687	0.66835	-0.096836	0.008892	0.11213	-0.0070576	0.075044	-0.0041268	-0.61513	-0.0076385	0.39031	0.0013868	0.50958	0.10774	0.034175	-0.0056757	0.084529	0.02525	0.28675	-0.0012473	0.55549	
Deletion Peak 12 - CN values	9p21.3  	chr9:21865498-22448737(probes 843237:843600)        	chr9:21999616-22011391(probes 843304:843328)        	chr9:21320827-24095606(probes 842909:844692)      	2.7511e-07	 2.7511e-07		Actual Copy Change Given	-0.3203	-0.2066	-0.78774	-0.14772	-1.0575	-0.98012	-0.94056	0	-0.0053938	0.017769	0.0049969	-0.0026322	-0.37976	-0.018902	0.00597	-0.24302	-0.82733	-0.67743	-1.1236	-0.54885	-0.0038779	0.0048579	-1.2929	0.43479	-1.2929	-0.22027	0.014051	0	0.041352	0.48889	0.040763	-0.80298	-0.15272	0.0015624	-0.0036155	0.44443	0.041659	0.0028024	-0.61863	0.019894	0.27726	0.020497	-1.2929	-1.2929	0.050677	-0.0031859	-0.42536	0.017463	-0.19687	-0.0034627	-1.2929	
Deletion Peak 13 - CN values	9q34.3  	chr9:131934548-141213431(probes 893415:897849)    	chr9:140310047-141213431(probes 897633:897849)    	chr9:134858098-141213431(probes 895151:897849)  	0.023103	   0.023103		Actual Copy Change Given	-0.32623	-0.033541	-0.0087146	0.35871	0.042851	0.10103	0.1483	0	-0.057434	0.027021	0.0093098	0.00069327	1.0302	-0.018902	1.7387	-0.01037	-0.47596	0.13353	0.01433	0.48163	0.011679	-0.015741	0.063939	-1.2929	-0.73214	-0.10597	-0.073209	-0.71146	-0.091386	-1.1899	-0.57368	0.58533	0.11741	0.023847	-0.045635	-0.50214	-0.11751	0.040638	0.043723	0.019894	-0.13329	0.028763	-0.54971	0.052169	0.050677	-0.0031859	-0.39728	-0.9371	0.21161	-0.0034627	-0.59196	
Deletion Peak 14 - CN values	10p15.3 	chr10:1-857150(probes 897850:897995)                   	chr10:1-742144(probes 897850:897937)                   	chr10:1-485674(probes 897850:897897)                 	0.080441	    0.07995		Actual Copy Change Given	0.28074	-0.29898	-0.070434	1.1495	-1.2232	0.5172	-0.39408	-0.0073263	-0.0084385	0.0059157	-0.0015243	0	0.0041701	0.083776	-0.0027707	-0.46918	0.067805	0	-0.5427	-0.59127	0.010006	-0.01904	-0.8186	-0.50287	0	-0.32883	-0.020961	-0.13569	-0.57662	-0.5791	0.020623	-0.80993	-0.24363	0.023566	-0.0026975	-1.0065	-0.18818	-0.022305	-1.2929	0.017343	0.72508	0.016425	-0.64419	-0.17714	-0.13018	0	-0.46012	0.018103	-0.67104	-0.0031859	-0.5852	
Deletion Peak 15 - CN values	11p15.5 	chr11:1-929549(probes 978754:978857)                   	chr11:1-496996(probes 978754:978766)                   	chr11:1-5002385(probes 978754:980669)               	0.0021152	  0.0021683		Actual Copy Change Given	-0.51455	-0.78656	-0.021784	-0.31412	-0.025209	-0.01037	-0.38112	0.00458	-0.015054	-0.76735	-0.0045695	-0.0016629	-0.3801	-0.43951	0.00069327	-0.81729	-0.82513	-0.052882	-0.55558	-0.032178	0.0043021	0.0019418	-0.45415	-0.91935	-0.68761	-0.16159	0.0051359	-0.64373	-0.66168	-0.028218	-0.0020784	-0.6472	0.71321	0.035665	0.79549	-0.99214	-0.2765	0.040779	0.012237	0.0083486	0.38308	0.013353	-0.52568	-0.58093	-0.47247	0.0010311	-0.43591	0.013772	0.21832	0.0012481	-0.0087146	
Deletion Peak 16 - CN values	11q22.3 	chr11:73083465-135006516(probes 1017065:1056041)  	chr11:101318898-105017922(probes 1034419:1036478)	chr11:98405360-135006516(probes 1032142:1056041)	0.019265	   0.066308		Actual Copy Change Given	-0.38537	-0.17727	-0.01904	-0.36163	-1.0458	-0.034401	0.14503	-0.0072284	-0.015054	-0.79889	-0.11221	-0.0016629	-0.00027034	0.4628	-0.0062946	-0.022856	-0.91702	0.22722	-0.56776	-0.56286	0.0043021	1.2868	0.0022193	0.52906	0.034677	-0.16159	-0.95166	-0.62347	0.63614	-0.56186	0.70626	-0.025767	-0.03681	0.035665	-0.81827	0.00597	-0.2765	0.0065541	-0.056981	0.0090026	-0.47438	0.013353	-0.54497	-0.63102	-0.037354	0.0010311	-0.43591	-0.96308	0.25386	0.0012481	-0.57565	
Deletion Peak 17 - CN values	11q24.3 	chr11:102494467-135006516(probes 1035026:1056041)	chr11:128803545-128815336(probes 1052780:1052790)	chr11:98405360-135006516(probes 1032142:1056041)	0.00019777	   0.028808		Actual Copy Change Given	0.26954	-0.58402	-0.78311	-0.36163	-1.2929	-0.046718	-0.36974	0.010982	-0.015054	-1.2676	-0.10092	-0.0016629	-0.00027034	0.70663	-0.0062946	-0.022856	-0.46206	-0.35618	-0.55076	1.403	0.0043021	-0.094988	0.0022193	0.41312	0.034677	-0.16159	0.019503	-0.60991	0.61856	-0.56186	0.70626	-0.01223	-0.48376	0.035665	-0.81827	0.00597	-0.2765	0.0065541	-0.056981	0.016676	-0.4695	0.013353	-0.54497	-0.63102	-0.037354	0.0079175	-0.43591	-0.96035	-0.68515	0.0012481	-0.58539	
Deletion Peak 18 - CN values	12p12.3 	chr12:1-39688977(probes 1056042:1075847)             	chr12:14918902-14982351(probes 1063916:1063933)    	chr12:10717443-19081313(probes 1061300:1066385)  	0.036609	   0.036828		Actual Copy Change Given	0.48664	-0.24642	0.85977	2.2029	-0.39441	-0.3189	0.050108	-0.0034627	0.0066653	-0.13734	-0.043737	-0.00069303	0.6572	-0.82944	-0.0071958	-0.86354	0.03369	-0.11842	-0.58019	0.023566	-0.14014	-0.64067	0.023145	0.0084743	0.017824	-0.0013074	-0.95811	0.27071	0.029783	0	-0.056195	-0.0103	0.14578	-0.010155	-0.81991	0.47667	-0.077556	0.00030512	0.53731	0.0064976	-0.0501	0.0095883	0.1605	0	-0.03245	-0.0012473	0.43888	-0.0022168	-0.20005	0	0.52101	
Deletion Peak 19 - CN values	13q14.2 	chr13:48833767-49798173(probes 1148606:1149301)    	chr13:48875753-49060837(probes 1148629:1148855)    	chr13:39400716-75172483(probes 1142542:1161810)  	3.3332e-06	 3.3332e-06		Actual Copy Change Given	-0.32577	-0.21824	-0.77354	-0.27703	-0.63235	-0.47522	-0.023292	-0.01037	0.027919	-0.90003	-0.0018014	-0.0029091	-0.38089	-0.23692	0.0034687	-0.028081	-0.82538	-0.07275	0.0012481	-0.54854	-0.911	-0.51753	-0.77363	-1.2745	-0.83414	-0.21323	-1.2929	-1.1684	-1.2929	-1.2929	-0.80509	-0.80223	-0.40584	-0.94963	-0.81433	-0.46961	-0.76326	-1.2929	-0.64387	-0.018519	-0.4787	-0.88302	0	-0.61575	-0.9186	-0.0055375	-0.45958	-0.016429	-1.1588	0.0016642	-0.57407	
Deletion Peak 20 - CN values	14q24.1 	chr14:1-102523336(probes 1186683:1234858)         	chr14:68208721-68289663(probes 1212995:1213053)    	chr14:68217052-68809563(probes 1213001:1213284)  	0.10858	    0.10871		Actual Copy Change Given	-0.32913	-0.24107	-0.77124	-0.51218	-0.46791	0.11741	-0.37335	-0.0084913	0	-0.041348	-0.00055444	-0.0036011	-0.0080316	-0.20386	-0.27375	0.22083	0.029466	-0.1147	-0.55977	-0.56892	-0.10368	0.022585	-0.78724	0.0012302	-0.75119	0.04593	-0.97381	0.36467	-0.54641	0.55762	-0.86279	-0.0018698	-0.34799	-0.018078	0.42267	0.45888	0.078643	-0.86246	-0.5977	-0.82344	0.22422	-0.88066	-0.80414	-0.62903	0.019223	0.00041593	0.073864	-1.2929	0.26687	-0.00027724	-0.0066432	
Deletion Peak 21 - CN values	17p13.1 	chr17:7613709-7744654(probes 1324679:1324737)        	chr17:7617433-7743098(probes 1324682:1324736)        	chr17:7506258-7754459(probes 1324646:1324739)      	0.0023697	  0.0023252		Actual Copy Change Given	0	0.0051395	1.0925	-0.12148	0.05281	0.36756	0.55531	-0.0069195	-0.053341	0.080112	0.00041593	0.001392	-0.01711	-0.30815	-0.011335	0.010285	0.065656	0.48793	0.030169	-0.024251	-0.86923	-0.0091286	0.40011	1.1093	0.1649	-0.20329	-0.078677	0.34867	-0.024047	-0.52634	-0.80335	-0.062018	-0.27739	-1.2929	-0.013953	0.43614	-0.66851	-0.85542	-0.58811	0.071218	-0.095912	0.049682	-0.55952	0.10103	-0.97955	0.013492	-0.47202	0.0558	-0.70559	0	0.51037	
Deletion Peak 22 - CN values	17q25.3 	chr17:80443432-80617015(probes 1358241:1358351)    	chr17:80474034-80571059(probes 1358253:1358329)    	chr17:80531387-81195210(probes 1358284:1358518)  	0.0087613	  0.0089643		Actual Copy Change Given	0	-0.24982	-0.050911	0.037359	-0.37831	-0.037218	0.0375	-0.0069195	-0.053341	0.96424	0.00041593	-0.019589	-0.01711	-0.31536	-0.011335	0.079735	-0.80823	-0.21871	0.0051359	-0.020001	-0.85504	-0.0091286	1.1145	0.6148	0.26671	0.16333	-0.047395	0.12674	-0.059639	-0.97253	-0.77473	-0.057888	-0.12486	0.036229	-0.00097017	-0.48921	-0.071149	0.040527	0.085076	0.061638	-0.47765	0.87807	0.054013	0.086558	0.022164	0.013492	-0.46608	-0.91695	-0.24569	-0.0094046	0.51037	
Deletion Peak 23 - CN values	19p13.3 	chr19:1-3187429(probes 1401205:1401874)               	chr19:1-412729(probes 1401205:1401233)                 	chr19:1-1537245(probes 1401205:1401443)             	0.069889	   0.069889		Actual Copy Change Given	0.1802	1.2855	0.79452	2.9249	-0.017941	-0.061958	0.36936	-0.0048395	-0.056307	0.19826	-0.0013858	-0.0037395	-0.033807	0.18404	-0.023703	-0.77583	-0.076412	-0.42534	0.32334	-0.023703	0.044574	0.46468	0.57255	0.60178	-0.69667	-0.054883	-0.051586	0.33018	-0.61899	0.0055291	-0.74716	-0.19343	0.32173	0.84041	-0.019314	-0.43583	-0.53384	0.056684	-0.69224	0.092575	-0.43821	0.035665	-0.61964	-0.14502	-0.71942	-0.061555	-0.34959	1.0042	-0.24448	0.0038854	-0.038578	
Deletion Peak 24 - CN values	19q13.33	chr19:44382732-50837901(probes 1419090:1421782)    	chr19:48206763-48250319(probes 1420828:1420844)    	chr19:47785582-48390143(probes 1420617:1420879)  	0.038533	   0.036828		Actual Copy Change Given	0.17226	1.074	0.50377	0.0023581	-0.54522	0.64818	0.27916	-0.023136	-0.056307	-0.79831	-0.011421	-0.0088526	-0.027665	-0.27296	-0.023703	-0.079476	-0.076412	0.049318	-0.037354	-0.56654	-0.00027724	-0.10788	-0.19525	-0.63699	-0.74455	-0.04813	-0.080008	-0.22977	-0.64168	-1.1368	0.053664	0.88936	0.32173	-0.0696	-0.019314	-0.024935	0.0040822	0.042902	-0.028765	0.092575	-0.12642	-0.83922	-0.0075471	-0.14502	-0.97521	0.019783	-0.022577	-0.91432	-0.24399	0.0038854	-0.038578	
Deletion Peak 25 - CN values	21q22.3 	chr21:47427840-47609222(probes 1482952:1483008)    	chr21:47572498-47609222(probes 1482998:1483008)    	chr21:46320794-47632191(probes 1482544:1483023)  	0.0074803	  0.0071201		Actual Copy Change Given	-0.2913	-0.62846	0.61679	0.018243	-0.40418	0.43125	-0.39263	0.0070826	0.61885	-0.92863	0.0033299	0.0079175	-0.0039253	0.0033299	0.0015255	-0.46993	-0.41388	0.14882	-1.266	-0.59701	0.010703	-0.0060904	0.029466	-0.99514	0.078582	-0.17581	-0.0099565	0.44586	0.52875	0.39147	0.026233	-0.00076151	-0.26769	0.00055459	0.030732	-0.16077	-0.82118	0.038517	-0.6009	0.014022	0.27253	0.033408	-0.62279	-0.63282	-0.10368	0.0012481	-0.43179	0.074121	-0.20237	-0.0012713	-0.005814	
Deletion Peak 26 - CN values	Xq21.1  	chrX:76225229-77102528(probes 1529015:1529095)      	chrX:76722851-77070309(probes 1529070:1529094)      	chrX:74316005-77001323(probes 1528601:1529090)    	8.5055e-06	 9.7627e-06		Actual Copy Change Given	0.011121	-0.57743	2.2601	0.12703	1.113	0.7528	-0.17158	0.026514	-0.063435	-0.1884	0.029606	0.019095	-0.056974	-0.055756	0.038065	-1.2929	-1.1613	0.076486	-0.99646	-0.11417	-0.082668	-1.0585	-0.46579	1.7942	-0.21466	-0.17036	-0.47056	-1.2929	0.23183	-0.41893	-0.20647	0.15719	-0.31786	-0.12043	-0.4773	-0.14926	-0.14162	0.40681	-0.25479	-0.08243	0.70738	-0.1945	-0.038244	-0.44954	-0.15625	-0.0099289	-0.62005	-0.16281	0.0040243	0.00055459	-0.01849	
Deletion Peak 27 - CN values	Xq28    	chrX:147107975-149615811(probes 1561034:1562148)  	chrX:148608171-148623035(probes 1561851:1561857)  	chrX:148211017-149119764(probes 1561645:1561859)	0.035046	   0.039101		Actual Copy Change Given	0.011121	1.0582	-0.64985	-0.65873	-0.49642	-0.52532	-0.15388	0.035806	-0.071956	-0.13799	0.029606	0.019095	-0.043324	-0.055756	0.038065	-0.29638	-0.93511	0.87616	0.043067	3.6569	-0.082668	-0.013953	-0.079742	-1.2929	-0.21094	-0.17036	-1.2328	-0.17241	0.26173	-0.55491	-0.2292	0.15719	-0.19912	-0.090758	-0.52604	-0.14926	-0.14162	0.45278	0.1634	-0.08243	-0.62446	-0.17639	-0.038244	-0.44954	-0.15625	-0.0099289	-0.64042	-0.15643	0.021884	0.00055459	-0.048782	
