cnvarms2cluster1 sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/SARC-TP/2859925/broad_values_by_arm.txt |
Correlate_Cluster_cnvarms_onlysig2 clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SARC-TP/2907539/1.GDAC_mergedClustering.Finished/SARC-TP.transferedmergedcluster.txt |
Correlate_Cluster_cnvarms_onlysig2 filter cluster smaller than | 3 |
Correlate_Cluster_cnvarms_onlysig2 output name | SARC-TP |
Correlate_Cluster_cnvarms_onlysig2 figure height | 5 |
Correlate_Cluster_cnvarms_onlysig2 figure width | 9 |
Correlate_Cluster_cnvarms_onlysig2 survival legend position | OUT |
Correlate_Cluster_cnvarms_onlysig2 pvalue cutoff | 1 |
Correlate_Cluster_cnvarms_onlysig2 qvalue cutoff | 0.25 |
Correlate_Cluster_cnvarms_onlysig2 make figure | ONLYSIG |
Correlate_Cluster_cnvarms_onlysig2 nozzle ver | Nozzle.R1 |
Execution Times: | |
Submitted: | 09:50:37 09-04-13 |
Completed: | |
Elapsed: | 00 hrs 02 mins 06 secs |
step 1. cnvarms2cluster [id: 375851] Convert mutsig results to cluster files
urn:lsid:broadinstitute.org:cancer.genome.analysis:00499:3
sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/SARC-TP/2859925/broad_values_by_arm.txt |
maf file | |
sig gene file | |
sig gene q cutoff | 0.01 |
output name |
Output Files: | |
broad_values_by_arm.mutsig.cluster.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 09:50:40 09-04-13 |
Completed: | 09:51:57 09-04-13 |
Elapsed: | 00 hrs 01 mins 16 secs |
step 2. Correlate_Cluster_cnvarms_onlysig [id: 375852]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00508:2
cluster label file | broad_values_by_arm.mutsig.cluster.txt |
clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SARC-TP/2907539/1.GDAC_mergedClustering.Finished/SARC-TP.transferedmergedcluster.txt |
features used | ALL |
filter cluster smaller than | 3 |
output name | SARC-TP |
figure height | 5 |
figure width | 9 |
survival legend position | OUT |
pvalue cutoff | 1 |
qvalue cutoff | 0.25 |
make figure | ONLYSIG |
nozzle ver | Nozzle.R1 |
options | MUTSIG |
report title | |
job description |
Output Files: | |
table.1.txt | |
nozzle.html | |
nozzle.RData | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 09:50:40 09-04-13 |
Completed: | 09:52:43 09-04-13 |
Elapsed: | 00 hrs 02 mins 02 secs |